Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0001301 Helianthus annuus HOM05D003821 ORTHO05D004449 8.8e-20 99.4 52 100.0
HanXRQChr06g0169061 Helianthus annuus HOM05D003821 ORTHO05D004449 1.6e-16 88.6 48 93.8
Sed0001615 Sechium edule HOM05D003821 ORTHO05D004449 8.3e-10 66.2 49 73.5
Gohir.D01G051650 Gossypium hirsutum HOM05D003821 ORTHO05D004449 4.1e-09 63.9 41 75.6
Gohir.D08G087850 Gossypium hirsutum HOM05D003821 ORTHO05D004449 4.1e-09 63.9 41 75.6
Gohir.D08G106266 Gossypium hirsutum HOM05D003821 ORTHO05D004449 4.1e-09 63.9 41 75.6
Gorai.002G124200 Gossypium raimondii HOM05D003821 ORTHO05D004449 4.1e-09 63.9 41 75.6
Medtr7g108615 Medicago truncatula HOM05D003821 ORTHO05D004449 5.4e-09 63.5 42 78.6
Sabra10G0014100 Salix brachista HOM05D003821 ORTHO05D004449 5.4e-09 63.5 43 76.7
Sp7g14190 Schrenkiella parvula HOM05D003821 ORTHO05D004449 5.4e-09 63.5 51 66.7
BraA08t33190Z Brassica rapa HOM05D003821 ORTHO05D004449 7.0e-09 63.2 45 68.9
Lj4g0002252 Lotus japonicus HOM05D003821 ORTHO05D004449 7.0e-09 63.2 50 72.0
unitig_748.g8733 Utricularia gibba HOM05D003821 ORTHO05D004449 7.0e-09 63.2 39 82.1
C01p27060 Brassica napus HOM05D003821 ORTHO05D004449 9.1e-09 62.8 39 79.5
Lalb_Chr15g0078581 Lupinus albus HOM05D003821 ORTHO05D004449 9.1e-09 62.8 38 84.2
BolC8t48318H Brassica oleracea HOM05D003821 ORTHO05D004449 1.2e-08 62.4 49 65.3
TPR.G33980 Trifolium pratense HOM05D003821 ORTHO05D004449 1.2e-08 62.4 43 76.7
vmacro08148 Vaccinium macrocarpon HOM05D003821 ORTHO05D004449 1.2e-08 62.4 42 78.6
ATR0580G132 Amborella trichopoda HOM05D003821 ORTHO05D004449 1.6e-08 62.0 43 72.1
BcaB04g18333 Brassica carinata HOM05D003821 ORTHO05D004449 1.6e-08 62.0 41 75.6
TPR.G9594 Trifolium pratense HOM05D003821 ORTHO05D004449 1.6e-08 62.0 40 77.5
GSVIVG01017758001 Vitis vinifera HOM05D003821 ORTHO05D004449 1.6e-08 62.0 43 74.4
BolC7t45268H Brassica oleracea HOM05D003821 ORTHO05D004449 2.0e-08 61.6 49 71.4
BraA01t02079Z Brassica rapa HOM05D000802 ORTHO05D013138 2.0e-08 61.6 42 73.8
BraA03t14035Z Brassica rapa HOM05D003821 ORTHO05D004449 2.0e-08 61.6 49 71.4
Ciclev10007067m.g Citrus clementina HOM05D003821 ORTHO05D004449 2.7e-08 61.2 40 75.0
MD11G1304500 Malus domestica HOM05D003821 ORTHO05D004449 2.7e-08 61.2 43 74.4
Haze_04896 Corylus avellana HOM05D003821 ORTHO05D004449 3.5e-08 60.8 38 81.6
Medtr1g088760 Medicago truncatula HOM05D003821 ORTHO05D004449 3.5e-08 60.8 40 77.5
Nitab4.5_0000191g0110 Nicotiana tabacum HOM05D003821 ORTHO05D004449 3.5e-08 60.8 39 76.9
Gorai.004G142200 Gossypium raimondii HOM05D003821 ORTHO05D004449 4.5e-08 60.5 41 73.2
RcHm_v2.0_Chr4g0422231 Rosa chinensis HOM05D003821 ORTHO05D004449 4.5e-08 60.5 37 86.5
Lalb_Chr18g0047131 Lupinus albus HOM05D003821 ORTHO05D004449 5.9e-08 60.1 38 81.6
Rhsim02G0009100 Rhododendron simsii HOM05D003821 ORTHO05D004449 5.9e-08 60.1 43 72.1
Gorai.005G060300 Gossypium raimondii HOM05D003821 ORTHO05D004449 1.0e-07 59.3 38 76.3
Nn3g21436 Nelumbo nucifera HOM05D000763 ORTHO05D000599 1.0e-07 59.3 43 69.8
RcHm_v2.0_Chr6g0293541 Rosa chinensis HOM05D003821 ORTHO05D004449 1.0e-07 59.3 39 74.4
CSS0020997 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 1.3e-07 58.9 49 69.4
CSS0044842 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 1.3e-07 58.9 49 69.4
CSS0048427 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 2.2e-07 58.2 49 69.4
Cc03_g01940 Coffea canephora HOM05D003821 ORTHO05D004449 2.9e-07 57.8 43 72.1
QL10p053326 Quercus lobata HOM05D003821 ORTHO05D004449 3.8e-07 57.4 37 81.1
QL10p054532 Quercus lobata HOM05D003821 ORTHO05D004449 3.8e-07 57.4 37 81.1
Hund05412 Selenicereus undatus HOM05D003821 ORTHO05D004449 6.5e-07 56.6 43 65.1
Atru.chr4.2835 Acer truncatum HOM05D003821 ORTHO05D004449 1.1e-06 55.8 37 75.7
Potri.014G131701 Populus trichocarpa HOM05D003821 ORTHO05D004449 1.1e-06 55.8 34 85.3
GSVIVG01027975001 Vitis vinifera HOM05D003821 ORTHO05D004449 1.1e-06 55.8 35 80.0
MELO3C016019.2 Cucumis melo HOM05D003821 ORTHO05D004449 1.9e-06 55.1 34 79.4
FvH4_4g18020 Fragaria vesca HOM05D003821 ORTHO05D004449 1.9e-06 55.1 34 85.3
MD03G1285000 Malus domestica HOM05D003821 ORTHO05D004449 1.9e-06 55.1 47 66.0
AL7G39490 Arabidopsis lyrata HOM05D003821 ORTHO05D004449 2.5e-06 54.7 34 79.4
AT4G15802 Arabidopsis thaliana HOM05D003821 ORTHO05D004449 2.5e-06 54.7 34 79.4
Manes.15G012400 Manihot esculenta HOM05D003821 ORTHO05D004449 2.5e-06 54.7 34 79.4
Nn4g25849 Nelumbo nucifera HOM05D003821 ORTHO05D004449 2.5e-06 54.7 34 82.4
Gohir.A08G117600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 3.2e-06 54.3 34 76.5
Ca_10352_v3 Cicer arietinum L. HOM05D003821 ORTHO05D004449 4.2e-06 53.9 34 79.4
MSTRG.24794 Avicennia marina HOM05D003821 ORTHO05D004449 5.5e-06 53.5 34 76.5
CARHR290310 Cardamine hirsuta HOM05D003821 ORTHO05D004449 5.5e-06 53.5 34 79.4
CiPaw.08G097300 Carya illinoinensis HOM05D003821 ORTHO05D004449 5.5e-06 53.5 34 79.4
Gorai.N022500 Gossypium raimondii HOM05D003821 ORTHO05D004449 5.5e-06 53.5 42 66.7
Psat3g022560 Pisum sativum HOM05D003821 ORTHO05D004449 5.5e-06 53.5 34 79.4
Phvul.009G247900 Phaseolus vulgaris HOM05D003821 ORTHO05D004449 7.2e-06 53.1 34 76.5
Carub.0007s2585 Capsella rubella HOM05D003821 ORTHO05D004449 9.5e-06 52.8 34 76.5
THA.LOC104820264 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 9.5e-06 52.8 34 79.4


User provided reference genes

Program Settings