Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0000791 Helianthus annuus HOM05D007627 ORTHO05D009640 2.0e-83 312.4 157 100.0
HanXRQChr11g0329361 Helianthus annuus HOM05D007627 ORTHO05D009640 1.4e-28 130.2 92 73.9
ECA248G3246 Erigeron canadensis HOM05D007627 ORTHO05D009640 2.5e-25 119.4 90 68.9
arahy.Tifrunner.gnm1.ann1.2EH2S8 Arachis hypogaea HOM05D006497 ORTHO05D009640 2.0e-19 99.8 108 50.9
CAN.G134.101 Capsicum annuum HOM05D007627 ORTHO05D009640 7.7e-19 97.8 90 58.9
Cc02_g30590 Coffea canephora HOM05D007627 ORTHO05D009640 1.3e-18 97.1 87 58.6
Peaxi162Scf00282g00336 Petunia axillaris HOM05D007627 ORTHO05D009640 2.3e-18 96.3 91 56.0
CsaV3_1G045260 Cucumis sativus L. HOM05D007627 ORTHO05D009640 3.8e-18 95.5 91 54.9
Actinidia21001 Actinidia chinensis HOM05D007627 ORTHO05D009640 5.0e-18 95.1 94 57.4
CSS0016321 Camellia sinensis var. sinensis HOM05D007627 ORTHO05D009640 5.0e-18 95.1 85 62.4
Lsat_1_v5_gn_5_191420 Lactuca sativa HOM05D007627 ORTHO05D009640 6.5e-18 94.7 81 66.7
RcHm_v2.0_Chr7g0241611 Rosa chinensis HOM05D007627 ORTHO05D009640 6.5e-18 94.7 90 55.6
Rhsim01G0290400 Rhododendron simsii HOM05D007627 ORTHO05D009640 8.6e-18 94.4 89 56.2
Sc17g0000480 Simmondsia chinensis HOM05D007627 ORTHO05D009640 1.1e-17 94.0 86 54.7
CSS0031687 Camellia sinensis var. sinensis HOM05D007627 ORTHO05D009640 1.5e-17 93.6 85 61.2
Dinv33113 Davidia involucrata HOM05D000361 ORTHO05D005006 1.5e-17 93.6 98 59.2
Actinidia25845 Actinidia chinensis HOM05D007627 ORTHO05D009640 1.9e-17 93.2 91 58.2
MELO3C010153.2 Cucumis melo HOM05D007627 ORTHO05D009640 1.9e-17 93.2 92 52.2
Nitab4.5_0001592g0100 Nicotiana tabacum HOM05D007627 ORTHO05D009640 1.9e-17 93.2 88 56.8
Solyc01g097360.4 Solanum lycopersicum HOM05D007627 ORTHO05D009640 1.9e-17 93.2 89 56.2
Manes.05G003000 Manihot esculenta HOM05D007627 ORTHO05D009640 2.5e-17 92.8 91 56.0
Nitab4.5_0012228g0040 Nicotiana tabacum HOM05D007627 ORTHO05D009640 3.3e-17 92.4 88 58.0
Haze_05035 Corylus avellana HOM05D007627 ORTHO05D009640 7.2e-17 91.3 79 62.0
Sopen01g041030 Solanum pennellii HOM05D007627 ORTHO05D009640 7.2e-17 91.3 88 55.7
MD03G1295800 Malus domestica HOM05D007627 ORTHO05D009640 9.5e-17 90.9 90 52.2
Sed0009470 Sechium edule HOM05D007627 ORTHO05D009640 1.6e-16 90.1 91 54.9
ClCG10G011370 Citrullus lanatus HOM05D007627 ORTHO05D009640 2.8e-16 89.4 90 55.6
Dinv10091 Davidia involucrata HOM05D007627 ORTHO05D009640 2.8e-16 89.4 66 68.2
VMungo1383G2294 Vigna mungo HOM05D007627 ORTHO05D009640 3.6e-16 89.0 91 54.9
FAN16G0578 Fragaria x ananassa HOM05D007627 ORTHO05D009640 6.1e-16 88.2 89 52.8
Atru.chr5.1007 Acer truncatum HOM05D007627 ORTHO05D009640 8.0e-16 87.8 91 59.3
TAR381G1624 Trochodendron aralioides HOM05D007627 ORTHO05D009640 8.0e-16 87.8 92 54.3
CiPaw.07G117000 Carya illinoinensis HOM05D007627 ORTHO05D009640 1.0e-15 87.4 91 56.0
Migut.B01085 Erythranthe guttata HOM05D007627 ORTHO05D009640 4.0e-15 85.5 92 52.2
FvH4_3g25590 Fragaria vesca HOM05D007627 ORTHO05D009640 4.0e-15 85.5 88 51.1
FAN11G3818 Fragaria x ananassa HOM05D007627 ORTHO05D009640 4.0e-15 85.5 88 51.1
Hma1.2p1_0212F.1_g089970 Hydrangea macrophylla HOM05D007627 ORTHO05D009640 5.2e-15 85.1 75 57.3
Lalb_Chr10g0091241 Lupinus albus HOM05D007627 ORTHO05D009640 5.2e-15 85.1 90 52.2
FAN21G2770 Fragaria x ananassa HOM05D007627 ORTHO05D009640 6.8e-15 84.7 90 51.1
Cfa005805 Carpinus fangiana HOM05D007627 ORTHO05D009640 8.9e-15 84.3 79 60.8
Glyma.18G296500 Glycine max HOM05D007627 ORTHO05D009640 8.9e-15 84.3 90 55.6
Prupe.8G271600 Prunus persica HOM05D007627 ORTHO05D009640 8.9e-15 84.3 90 50.0
FAN25G0556 Fragaria x ananassa HOM05D007627 ORTHO05D009640 1.5e-14 83.6 88 51.1
Thecc.01G312700 Theobroma cacao HOM05D007627 ORTHO05D009640 1.5e-14 83.6 79 59.5
Lalb_Chr04g0257421 Lupinus albus HOM05D007627 ORTHO05D009640 2.0e-14 83.2 91 49.5
Aa31LG2G19210 Aethionema arabicum HOM05D007627 ORTHO05D009640 2.6e-14 82.8 90 53.3
PGR119G1365 Punica granatum HOM05D007627 ORTHO05D009640 3.4e-14 82.4 88 51.1
QL12p020023 Quercus lobata HOM05D007627 ORTHO05D009640 4.4e-14 82.0 92 54.3
QL02p088799 Quercus lobata HOM05D007627 ORTHO05D009640 5.7e-14 81.6 90 53.3
Medtr7g007290 Medicago truncatula HOM05D007627 ORTHO05D009640 7.5e-14 81.3 91 50.5
Phvul.008G006000 Phaseolus vulgaris HOM05D007627 ORTHO05D009640 7.5e-14 81.3 80 55.0
Ciclev10023058m.g Citrus clementina HOM05D007627 ORTHO05D009640 9.8e-14 80.9 91 53.8
Potri.014G121300 Populus trichocarpa HOM05D007627 ORTHO05D009640 1.7e-13 80.1 73 58.9
DCAR_005763 Daucus carota HOM05D000361 ORTHO05D005006 2.8e-13 79.3 74 55.4
Oeu038438.1 Olea europaea HOM05D007627 ORTHO05D009640 2.8e-13 79.3 88 47.7
CANSAT78G1399 Cannabis sativa HOM05D007627 ORTHO05D009640 4.9e-13 78.6 91 50.5
Duzib192G0243 Durio zibethinus HOM05D007627 ORTHO05D009640 4.9e-13 78.6 80 55.0
SalBow8G4146 Salvia bowleyana HOM05D007627 ORTHO05D009640 6.3e-13 78.2 89 49.4
Cfa005807 Carpinus fangiana HOM05D007627 ORTHO05D009640 1.4e-12 77.0 79 55.7
Ca_04047_v3 Cicer arietinum L. HOM05D007627 ORTHO05D009640 1.4e-12 77.0 92 43.5
Thhalv10011898m.g Eutrema salsugineum HOM05D007627 ORTHO05D009640 2.4e-12 76.3 92 48.9
Gohir.A11G109700 Gossypium hirsutum HOM05D007627 ORTHO05D009640 3.1e-12 75.9 64 64.1
Gohir.D11G114900 Gossypium hirsutum HOM05D007627 ORTHO05D009640 3.1e-12 75.9 64 64.1
Gorai.007G123100 Gossypium raimondii HOM05D007627 ORTHO05D009640 3.1e-12 75.9 64 64.1
TPR.G35989 Trifolium pratense HOM05D007627 ORTHO05D009640 3.1e-12 75.9 88 48.9
Eucgr.H01048 Eucalyptus grandis HOM05D007627 ORTHO05D009640 4.1e-12 75.5 106 47.2
Psat3g205400 Pisum sativum HOM05D007627 ORTHO05D009640 4.1e-12 75.5 92 47.8
MSTRG.21216 Avicennia marina HOM05D007627 ORTHO05D009640 5.4e-12 75.1 75 53.3
Lj1g0016177 Lotus japonicus HOM05D007627 ORTHO05D009640 5.4e-12 75.1 88 51.1
Cpa.g.sc18.36 Carica papaya HOM05D007627 ORTHO05D009640 7.0e-12 74.7 84 46.4
CARHR037420 Cardamine hirsuta HOM05D007627 ORTHO05D009640 1.6e-11 73.6 93 48.4
Zm00001eb228130 Zea mays HOM05D007627 ORTHO05D009640 1.6e-11 73.6 82 51.2
AUR62044233 Chenopodium quinoa HOM05D007627 ORTHO05D009640 5.9e-11 71.6 77 51.9
COL.COLO4_23238 Corchorus olitorius HOM05D007627 ORTHO05D009640 5.9e-11 71.6 78 52.6
AUR62037635 Chenopodium quinoa HOM05D007627 ORTHO05D009640 7.8e-11 71.2 77 50.6
Os06g0717300 Oryza sativa ssp. japonica HOM05D007627 ORTHO05D009640 7.8e-11 71.2 87 47.1
BcaC08g42976 Brassica carinata HOM05D007627 ORTHO05D009640 1.0e-10 70.9 76 55.3
Sabra14G0090000 Salix brachista HOM05D007627 ORTHO05D009640 1.0e-10 70.9 63 55.6
unitig_578.g15942 Utricularia gibba HOM05D007627 ORTHO05D009640 1.0e-10 70.9 78 47.4
Ah.10g033580 Amaranthus hybridus HOM05D004014 ORTHO05D005890 1.3e-10 70.5 95 44.2
Sp1g34810 Schrenkiella parvula HOM05D007627 ORTHO05D009640 1.7e-10 70.1 89 44.9
HPP92_022749 Vanilla planifolia HOM05D007627 ORTHO05D009640 1.7e-10 70.1 117 36.8
BcaB07g33814 Brassica carinata HOM05D007627 ORTHO05D009640 3.8e-10 68.9 76 53.9
CDE04G1409 Ceratophyllum demersum HOM05D000443 ORTHO05D001066 6.6e-10 68.2 81 45.7
PSO700G0179 Papaver somniferum HOM05D007627 ORTHO05D009640 1.1e-09 67.4 82 52.4
ATR0807G116 Amborella trichopoda HOM05D007627 ORTHO05D009640 1.5e-09 67.0 94 42.6
Medtr7g007300 Medicago truncatula HOM05D000007 ORTHO05D000017 1.9e-09 66.6 71 50.7
SHI28956 Sapria himalayana HOM05D000002 ORTHO05D000001 1.9e-09 66.6 61 49.2
Aqoxy1G00002 Aquilegia oxysepala HOM05D007627 ORTHO05D009640 4.3e-09 65.5 83 48.2
AT1G47820 Arabidopsis thaliana HOM05D007627 ORTHO05D009640 3.6e-08 62.4 71 52.1
AL1G54240 Arabidopsis lyrata HOM05D007627 ORTHO05D009640 4.7e-08 62.0 80 51.2
EL10Ac2g03554 Beta vulgaris HOM05D007627 ORTHO05D009640 4.7e-08 62.0 73 47.9
Carub.0001s3677 Capsella rubella HOM05D007627 ORTHO05D009640 6.1e-08 61.6 81 49.4
THA.LOC104824213 Tarenaya hassleriana HOM05D007627 ORTHO05D009640 4.0e-07 58.9 61 50.8
Carub.0001s3680 Capsella rubella HOM05D007627 ORTHO05D009640 7.5e-06 54.7 82 48.8


User provided reference genes

Program Settings