Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0000021 Helianthus annuus HOM05D000257 ORTHO05D009070 1.2e-29 132.5 65 100.0
HanXRQChr01g0008411 Helianthus annuus HOM05D000257 ORTHO05D009070 2.6e-21 104.8 58 87.9
HanXRQChr03g0063811 Helianthus annuus HOM05D000257 ORTHO05D009070 3.8e-20 100.9 58 82.8
ECA236G1390 Erigeron canadensis HOM05D000257 ORTHO05D009070 3.5e-18 94.4 57 80.7
Lsat_1_v5_gn_8_55920 Lactuca sativa HOM05D000257 ORTHO05D009070 1.0e-17 92.8 54 85.2
arahy.Tifrunner.gnm1.ann1.AZF37F Arachis hypogaea HOM05D000257 ORTHO05D009070 2.8e-15 84.7 58 69.0
arahy.Tifrunner.gnm1.ann1.YN028F Arachis hypogaea HOM05D000257 ORTHO05D009070 2.8e-15 84.7 58 69.0
Lj5g0019479 Lotus japonicus HOM05D000257 ORTHO05D009070 4.8e-15 84.0 58 65.5
Lj2P1176T44 Lonicera japonica HOM05D000257 ORTHO05D009070 6.3e-15 83.6 58 65.5
unitig_61.g26328 Utricularia gibba HOM05D000257 ORTHO05D009070 8.2e-15 83.2 58 69.0
Phvul.007G169900 Phaseolus vulgaris HOM05D000257 ORTHO05D009070 1.4e-14 82.4 57 64.9
CANSAT35G0265 Cannabis sativa HOM05D000257 ORTHO05D009070 1.8e-14 82.0 58 65.5
VMungo0720G1308 Vigna mungo HOM05D000257 ORTHO05D009070 1.8e-14 82.0 57 66.7
DCAR_002747 Daucus carota HOM05D000257 ORTHO05D009070 2.4e-14 81.6 58 65.5
Dinv32956 Davidia involucrata HOM05D000257 ORTHO05D009070 3.1e-14 81.3 56 71.4
Glyma.10G025100 Glycine max HOM05D000257 ORTHO05D009070 4.1e-14 80.9 57 66.7
Actinidia09151 Actinidia chinensis HOM05D000257 ORTHO05D009070 5.3e-14 80.5 58 60.3
vmacro02554 Vaccinium macrocarpon HOM05D000257 ORTHO05D009070 5.3e-14 80.5 54 68.5
Hma1.2p1_0628F.1_g191960 Hydrangea macrophylla HOM05D000257 ORTHO05D009070 9.0e-14 79.7 58 63.8
PSO339G2340 Papaver somniferum HOM05D000257 ORTHO05D009070 9.0e-14 79.7 53 69.8
TPR.G1576 Trifolium pratense HOM05D000257 ORTHO05D009070 9.0e-14 79.7 58 65.5
TAR362G1035 Trochodendron aralioides HOM05D000257 ORTHO05D009070 9.0e-14 79.7 58 62.1
Ca_09770_v3 Cicer arietinum L. HOM05D000257 ORTHO05D009070 1.2e-13 79.3 58 65.5
Medtr1g072550 Medicago truncatula HOM05D000257 ORTHO05D009070 1.5e-13 79.0 58 65.5
Nitab4.5_0001028g0200 Nicotiana tabacum HOM05D000257 ORTHO05D009070 2.0e-13 78.6 58 65.5
Psat6g061080 Pisum sativum HOM05D000257 ORTHO05D009070 2.0e-13 78.6 58 63.8
Aqoxy5G00676 Aquilegia oxysepala HOM05D000257 ORTHO05D009070 2.6e-13 78.2 58 62.1
Lalb_Chr02g0142851 Lupinus albus HOM05D000257 ORTHO05D009070 2.6e-13 78.2 58 63.8
PSO384G1280 Papaver somniferum HOM05D000257 ORTHO05D009070 2.6e-13 78.2 53 71.7
Migut.D00271 Erythranthe guttata HOM05D000257 ORTHO05D009070 3.4e-13 77.8 58 60.3
Thecc.01G223800 Theobroma cacao HOM05D000257 ORTHO05D009070 3.4e-13 77.8 58 63.8
Sopen09g026590 Solanum pennellii HOM05D000257 ORTHO05D009070 4.5e-13 77.4 57 66.7
PGSC0003DMG400000949 Solanum tuberosum HOM05D000257 ORTHO05D009070 4.5e-13 77.4 57 66.7
Nitab4.5_0002386g0010 Nicotiana tabacum HOM05D000257 ORTHO05D009070 5.9e-13 77.0 58 65.5
CSS0034320 Camellia sinensis var. sinensis HOM05D000257 ORTHO05D009070 7.6e-13 76.6 58 62.1
Gohir.D07G163900 Gossypium hirsutum HOM05D000257 ORTHO05D009070 7.6e-13 76.6 58 62.1
Gorai.001G187800 Gossypium raimondii HOM05D000257 ORTHO05D009070 7.6e-13 76.6 58 62.1
Potri.002G220000 Populus trichocarpa HOM05D000257 ORTHO05D009070 7.6e-13 76.6 58 62.1
Sed0001813 Sechium edule HOM05D000257 ORTHO05D009070 7.6e-13 76.6 57 66.7
Nn1g02126 Nelumbo nucifera HOM05D000257 ORTHO05D009070 1.0e-12 76.3 58 63.8
Prupe.8G243800 Prunus persica HOM05D000257 ORTHO05D009070 1.3e-12 75.9 58 60.3
QL12p022373 Quercus lobata HOM05D000257 ORTHO05D009070 1.3e-12 75.9 58 63.8
CiPaw.07G093700 Carya illinoinensis HOM05D000257 ORTHO05D009070 1.7e-12 75.5 58 63.8
Gohir.A07G157500 Gossypium hirsutum HOM05D000257 ORTHO05D009070 1.7e-12 75.5 58 60.3
Atru.chr5.1382 Acer truncatum HOM05D000257 ORTHO05D009070 2.2e-12 75.1 58 60.3
FvH4_2g23842 Fragaria vesca HOM05D000257 ORTHO05D009070 2.2e-12 75.1 62 56.5
MD11G1289000 Malus domestica HOM05D000257 ORTHO05D009070 2.2e-12 75.1 58 62.1
COL.COLO4_15662 Corchorus olitorius HOM05D000257 ORTHO05D009070 2.9e-12 74.7 58 58.6
Actinidia00739 Actinidia chinensis HOM05D000257 ORTHO05D009070 3.8e-12 74.3 58 58.6
AUR62036811 Chenopodium quinoa HOM05D000257 ORTHO05D009070 3.8e-12 74.3 54 66.7
Medtr1g032040 Medicago truncatula HOM05D000257 ORTHO05D009070 3.8e-12 74.3 58 62.1
Medtr1g032380 Medicago truncatula HOM05D000257 ORTHO05D009070 3.8e-12 74.3 58 62.1
Oeu028080.1 Olea europaea HOM05D000257 ORTHO05D009070 3.8e-12 74.3 54 63.0
FAN15G1925 Fragaria x ananassa HOM05D000257 ORTHO05D009070 5.0e-12 73.9 62 54.8
FAN15G3545 Fragaria x ananassa HOM05D000257 ORTHO05D009070 5.0e-12 73.9 62 54.8
Peaxi162Scf00570g00044 Petunia axillaris HOM05D000257 ORTHO05D009070 5.0e-12 73.9 54 68.5
FAN20G1230 Fragaria x ananassa HOM05D000257 ORTHO05D009070 6.5e-12 73.6 62 56.5
FAN24G1533 Fragaria x ananassa HOM05D000257 ORTHO05D009070 8.4e-12 73.2 59 57.6
Sabra02G0167500 Salix brachista HOM05D000257 ORTHO05D009070 8.4e-12 73.2 58 58.6
ATR0994G012 Amborella trichopoda HOM05D000257 ORTHO05D009070 1.1e-11 72.8 47 70.2
Duzib138G1860 Durio zibethinus HOM05D000257 ORTHO05D009070 1.1e-11 72.8 58 58.6
MD03G1268200 Malus domestica HOM05D000257 ORTHO05D009070 1.4e-11 72.4 58 60.3
Ah.08g213010 Amaranthus hybridus HOM05D000257 ORTHO05D009070 1.9e-11 72.0 58 62.1
ClCG09G006920 Citrullus lanatus HOM05D000257 ORTHO05D009070 1.9e-11 72.0 58 58.6
Manes.05G074100 Manihot esculenta HOM05D000257 ORTHO05D009070 1.9e-11 72.0 54 66.7
THA.LOC104817550 Tarenaya hassleriana HOM05D000257 ORTHO05D009070 1.9e-11 72.0 49 71.4
CAN.G609.8 Capsicum annuum HOM05D000257 ORTHO05D009070 2.5e-11 71.6 56 60.7
RcHm_v2.0_Chr6g0291451 Rosa chinensis HOM05D000257 ORTHO05D009070 2.5e-11 71.6 57 57.9
AT3G63090 Arabidopsis thaliana HOM05D000257 ORTHO05D009070 3.2e-11 71.2 58 55.2
SalBow4G1415 Salvia bowleyana HOM05D000257 ORTHO05D009070 3.2e-11 71.2 58 53.4
Ciclev10020353m.g Citrus clementina HOM05D000257 ORTHO05D009070 4.2e-11 70.9 58 58.6
CDE02G4780 Ceratophyllum demersum HOM05D000328 ORTHO05D009070 5.5e-11 70.5 56 58.9
Thhalv10006016m.g Eutrema salsugineum HOM05D000257 ORTHO05D009070 5.5e-11 70.5 58 55.2
FAN27G3161 Fragaria x ananassa HOM05D000257 ORTHO05D009070 5.5e-11 70.5 56 58.9
EL10Ac7g17211 Beta vulgaris HOM05D000257 ORTHO05D009070 7.2e-11 70.1 54 64.8
Haze_04737 Corylus avellana HOM05D000257 ORTHO05D009070 7.2e-11 70.1 58 58.6
Cfa006113 Carpinus fangiana HOM05D000257 ORTHO05D009070 9.3e-11 69.7 58 58.6
MELO3C015855.2 Cucumis melo HOM05D000257 ORTHO05D009070 9.3e-11 69.7 48 66.7
Sp5g00440 Schrenkiella parvula HOM05D000257 ORTHO05D009070 1.2e-10 69.3 58 53.4
SGA_v2.0_scaffold1G00454 Striga asiatica HOM05D000257 ORTHO05D009070 1.2e-10 69.3 51 64.7
A09p54910 Brassica napus HOM05D000257 ORTHO05D009070 2.1e-10 68.6 58 51.7
BraA09t40901Z Brassica rapa HOM05D000257 ORTHO05D009070 2.1e-10 68.6 58 51.7
TWI14G0398 Tripterygium wilfordii HOM05D000257 ORTHO05D009070 2.1e-10 68.6 58 55.2
AL5G45920 Arabidopsis lyrata HOM05D000257 ORTHO05D009070 2.7e-10 68.2 58 53.4
MBI19_g04668_MAGBIO Magnolia biondii HOM05D000257 ORTHO05D009070 2.7e-10 68.2 66 53.0
PGR054G0001 Punica granatum HOM05D000257 ORTHO05D009070 2.7e-10 68.2 49 69.4
PGR119G1369 Punica granatum HOM05D000257 ORTHO05D009070 2.7e-10 68.2 49 69.4
BcaC07g40788 Brassica carinata HOM05D000257 ORTHO05D009070 3.5e-10 67.8 58 50.0
C08p37810 Brassica napus HOM05D000257 ORTHO05D009070 3.5e-10 67.8 58 50.0
BolC8t51360H Brassica oleracea HOM05D000257 ORTHO05D009070 3.5e-10 67.8 58 50.0
CsaV3_7G028630 Cucumis sativus L. HOM05D000257 ORTHO05D009070 4.6e-10 67.4 58 55.2
BcaC08g45260 Brassica carinata HOM05D000257 ORTHO05D009070 6.1e-10 67.0 58 50.0
Carub.0005s2975 Capsella rubella HOM05D000257 ORTHO05D009070 6.1e-10 67.0 58 51.7
Eucgr.B03977 Eucalyptus grandis HOM05D000257 ORTHO05D009070 6.1e-10 67.0 58 55.2
Sc24g0004140 Simmondsia chinensis HOM05D000257 ORTHO05D009070 6.1e-10 67.0 57 57.9
Aa31LG10G16930 Aethionema arabicum HOM05D000257 ORTHO05D009070 1.8e-09 65.5 58 51.7
Atru.chr5.1374 Acer truncatum HOM05D000257 ORTHO05D009070 3.9e-09 64.3 41 73.2
CARHR173400 Cardamine hirsuta HOM05D000257 ORTHO05D009070 3.9e-09 64.3 58 50.0
Os01g0293200 Oryza sativa ssp. japonica HOM05D000257 ORTHO05D009070 8.7e-09 63.2 60 50.0
HPP92_002692 Vanilla planifolia HOM05D000257 ORTHO05D009070 3.3e-08 61.2 59 50.8
AUR62039897 Chenopodium quinoa HOM05D000257 ORTHO05D009070 5.7e-08 60.5 41 68.3
HPP92_002607 Vanilla planifolia HOM05D000257 ORTHO05D009070 2.2e-07 58.5 59 49.2
SHI15488 Sapria himalayana HOM05D000257 ORTHO05D009070 1.1e-06 56.2 40 67.5
Potri.005G191100 Populus trichocarpa HOM05D000257 ORTHO05D008537 5.3e-06 53.9 62 46.8
Ah.05g167850 Amaranthus hybridus HOM05D000257 ORTHO05D008537 9.0e-06 53.1 56 46.4
Dinv26364 Davidia involucrata HOM05D000257 ORTHO05D008537 9.0e-06 53.1 60 46.7
SEGI_00945 Sequoiadendron giganteum HOM05D000257 ORTHO05D009070 9.0e-06 53.1 42 57.1


User provided reference genes

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