Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr00c1250g0578861 Helianthus annuus HOM05D003859 ORTHO05D004927 2.8e-25 117.9 60 100.0
HanXRQChr12g0358751 Helianthus annuus HOM05D003859 ORTHO05D004927 2.7e-20 101.3 54 96.3
HanXRQChr13g0426071 Helianthus annuus HOM05D003859 ORTHO05D004927 2.7e-20 101.3 54 96.3
ECA236G2716 Erigeron canadensis HOM05D003859 ORTHO05D004927 7.8e-20 99.8 54 94.4
Lsat_1_v5_gn_3_134960 Lactuca sativa HOM05D003859 ORTHO05D004927 7.8e-20 99.8 54 94.4
ATR0757G138 Amborella trichopoda HOM05D003859 ORTHO05D004927 1.7e-19 98.6 54 94.4
Dinv32414 Davidia involucrata HOM05D003859 ORTHO05D004927 1.7e-19 98.6 54 90.7
PSO478G0841 Papaver somniferum HOM05D003859 ORTHO05D004927 1.7e-19 98.6 54 92.6
PSO782G5039 Papaver somniferum HOM05D003859 ORTHO05D004927 1.7e-19 98.6 54 92.6
HanXRQChr03g0093571 Helianthus annuus HOM05D003859 ORTHO05D004927 2.3e-19 98.2 54 92.6
HanXRQChr06g0169361 Helianthus annuus HOM05D003859 ORTHO05D004927 2.3e-19 98.2 54 92.6
Lsat_1_v5_gn_7_8061 Lactuca sativa HOM05D003859 ORTHO05D004927 2.3e-19 98.2 54 92.6
CSS0002513 Camellia sinensis var. sinensis HOM05D003859 ORTHO05D004927 3.9e-19 97.4 54 90.7
CSS0031587 Camellia sinensis var. sinensis HOM05D003859 ORTHO05D004927 3.9e-19 97.4 54 90.7
ECA240G3688 Erigeron canadensis HOM05D003859 ORTHO05D004927 3.9e-19 97.4 54 90.7
MBI12_g00015_MAGBIO Magnolia biondii HOM05D003859 ORTHO05D004927 3.9e-19 97.4 54 88.9
Cpa.g.sc18.179 Carica papaya HOM05D003859 ORTHO05D004927 5.0e-19 97.1 54 90.7
Aqoxy7G00479 Aquilegia oxysepala HOM05D003859 ORTHO05D004927 8.6e-19 96.3 54 88.9
CDE11G0175 Ceratophyllum demersum HOM05D003859 ORTHO05D004927 8.6e-19 96.3 54 90.7
Cc02_g37100 Coffea canephora HOM05D003859 ORTHO05D004927 8.6e-19 96.3 54 90.7
Nn6g34291 Nelumbo nucifera HOM05D003859 ORTHO05D004927 8.6e-19 96.3 54 90.7
THA.LOC104801464 Tarenaya hassleriana HOM05D003859 ORTHO05D004927 8.6e-19 96.3 54 90.7
CAN.G170.60 Capsicum annuum HOM05D003859 ORTHO05D004927 1.1e-18 95.9 54 90.7
CsaV3_6G005900 Cucumis sativus L. HOM05D003859 ORTHO05D004927 1.1e-18 95.9 54 90.7
Gohir.A08G128900 Gossypium hirsutum HOM05D003859 ORTHO05D004927 1.1e-18 95.9 54 88.9
Gohir.D08G150100 Gossypium hirsutum HOM05D003859 ORTHO05D004927 1.1e-18 95.9 54 88.9
Gorai.004G155900 Gossypium raimondii HOM05D003859 ORTHO05D004927 1.1e-18 95.9 54 88.9
Lalb_Chr10g0097571 Lupinus albus HOM05D003859 ORTHO05D004927 1.1e-18 95.9 54 90.7
Lalb_Chr17g0340021 Lupinus albus HOM05D003859 ORTHO05D004927 1.1e-18 95.9 54 90.7
MD07G1125500 Malus domestica HOM05D003859 ORTHO05D004927 1.1e-18 95.9 54 88.9
Nitab4.5_0013229g0030 Nicotiana tabacum HOM05D003859 ORTHO05D004927 1.1e-18 95.9 54 90.7
Nitab4.5_0018560g0010 Nicotiana tabacum HOM05D003859 ORTHO05D004927 1.1e-18 95.9 54 90.7
Peaxi162Scf00021g00233 Petunia axillaris HOM05D003859 ORTHO05D004927 1.1e-18 95.9 54 90.7
Solyc01g091880.3 Solanum lycopersicum HOM05D003859 ORTHO05D004927 1.1e-18 95.9 54 90.7
Sopen01g037650 Solanum pennellii HOM05D003859 ORTHO05D004927 1.1e-18 95.9 54 90.7
PGSC0003DMG400000004 Solanum tuberosum HOM05D003859 ORTHO05D004927 1.1e-18 95.9 54 90.7
TWI23G0207 Tripterygium wilfordii HOM05D003859 ORTHO05D004927 1.1e-18 95.9 54 90.7
Zm00001eb103080 Zea mays HOM05D003859 ORTHO05D004927 1.1e-18 95.9 54 88.9
Manes.01G263000 Manihot esculenta HOM05D003859 ORTHO05D004927 1.5e-18 95.5 54 88.9
Oeu024423.1 Olea europaea HOM05D003859 ORTHO05D004927 1.5e-18 95.5 54 88.9
TWI59G0333 Tripterygium wilfordii HOM05D003859 ORTHO05D004927 1.5e-18 95.5 54 90.7
Actinidia33450 Actinidia chinensis HOM05D003859 ORTHO05D004927 1.9e-18 95.1 54 88.9
Aa31LG1G11230 Aethionema arabicum HOM05D003859 ORTHO05D004927 1.9e-18 95.1 54 88.9
Ca_23767_v3 Cicer arietinum L. HOM05D003859 ORTHO05D004927 1.9e-18 95.1 54 88.9
Eucgr.E01322 Eucalyptus grandis HOM05D003859 ORTHO05D004927 1.9e-18 95.1 54 87.0
Glyma.03G018500 Glycine max HOM05D003859 ORTHO05D004927 1.9e-18 95.1 54 88.9
Glyma.07G079700 Glycine max HOM05D003859 ORTHO05D004927 1.9e-18 95.1 54 88.9
Lj3g0023636 Lotus japonicus HOM05D003859 ORTHO05D004927 1.9e-18 95.1 54 88.9
Medtr8g032880 Medicago truncatula HOM05D003859 ORTHO05D004927 1.9e-18 95.1 54 88.9
Nitab4.5_0001376g0070 Nicotiana tabacum HOM05D003859 ORTHO05D004927 1.9e-18 95.1 54 90.7
Peaxi162Scf00008g01623 Petunia axillaris HOM05D003859 ORTHO05D004927 1.9e-18 95.1 54 90.7
Phvul.010G089400 Phaseolus vulgaris HOM05D003859 ORTHO05D004927 1.9e-18 95.1 54 88.9
Psat4g151400 Pisum sativum HOM05D003859 ORTHO05D004927 1.9e-18 95.1 54 88.9
Prupe.2G153000 Prunus persica HOM05D003859 ORTHO05D004927 1.9e-18 95.1 54 88.9
QL08p050889 Quercus lobata HOM05D003859 ORTHO05D004927 1.9e-18 95.1 54 88.9
Sp1g00390 Schrenkiella parvula HOM05D003859 ORTHO05D004927 1.9e-18 95.1 54 88.9
Solyc10g017810.2 Solanum lycopersicum HOM05D003859 ORTHO05D004927 1.9e-18 95.1 54 90.7
Sopen10g006640 Solanum pennellii HOM05D003859 ORTHO05D004927 1.9e-18 95.1 54 90.7
PGSC0003DMG400010260 Solanum tuberosum HOM05D003859 ORTHO05D004927 1.9e-18 95.1 54 90.7
Thecc.01G370000 Theobroma cacao HOM05D003859 ORTHO05D004927 1.9e-18 95.1 54 88.9
TPR.G17600 Trifolium pratense HOM05D003859 ORTHO05D004927 1.9e-18 95.1 54 88.9
vmacro04847 Vaccinium macrocarpon HOM05D003859 ORTHO05D004927 1.9e-18 95.1 54 88.9
VMungo0331G1072 Vigna mungo HOM05D003859 ORTHO05D004927 1.9e-18 95.1 54 88.9
CANSAT56G3485 Cannabis sativa HOM05D003859 ORTHO05D004927 2.5e-18 94.7 54 88.9
Haze_16706 Corylus avellana HOM05D003859 ORTHO05D004927 2.5e-18 94.7 54 88.9
MELO3C022523.2 Cucumis melo HOM05D003859 ORTHO05D004927 2.5e-18 94.7 54 88.9
Gohir.A07G144700 Gossypium hirsutum HOM05D003859 ORTHO05D004927 2.5e-18 94.7 54 88.9
Gohir.D07G150600 Gossypium hirsutum HOM05D003859 ORTHO05D004927 2.5e-18 94.7 54 88.9
Gorai.001G172700 Gossypium raimondii HOM05D003859 ORTHO05D004927 2.5e-18 94.7 54 88.9
Os09g0521500 Oryza sativa ssp. japonica HOM05D003859 ORTHO05D004927 2.5e-18 94.7 54 88.9
Potri.002G152500 Populus trichocarpa HOM05D003859 ORTHO05D004927 2.5e-18 94.7 54 88.9
Actinidia31457 Actinidia chinensis HOM05D003859 ORTHO05D004927 3.3e-18 94.4 54 87.0
Lj7A522T33 Lonicera japonica HOM05D003859 ORTHO05D004927 3.3e-18 94.4 54 87.0
Nn1g01318 Nelumbo nucifera HOM05D003859 ORTHO05D004927 3.3e-18 94.4 54 88.9
AL1G10420 Arabidopsis lyrata HOM05D003859 ORTHO05D004927 4.3e-18 94.0 54 87.0
AT1G01910 Arabidopsis thaliana HOM05D003859 ORTHO05D004927 4.3e-18 94.0 54 87.0
BcaB03g13626 Brassica carinata HOM05D003859 ORTHO05D004927 4.3e-18 94.0 54 87.0
C08p53920 Brassica napus HOM05D003859 ORTHO05D004927 4.3e-18 94.0 54 87.0
BolC8t52905H Brassica oleracea HOM05D003859 ORTHO05D004927 4.3e-18 94.0 54 87.0
BraA09t42267Z Brassica rapa HOM05D003859 ORTHO05D004927 4.3e-18 94.0 54 87.0
Carub.0001s0033 Capsella rubella HOM05D003859 ORTHO05D004927 4.3e-18 94.0 54 87.0
CARHR000450 Cardamine hirsuta HOM05D003859 ORTHO05D004927 4.3e-18 94.0 54 87.0
Cfa001843 Carpinus fangiana HOM05D003859 ORTHO05D004927 4.3e-18 94.0 54 87.0
Dinv43749 Davidia involucrata HOM05D003859 ORTHO05D004927 4.3e-18 94.0 54 87.0
Thhalv10008053m.g Eutrema salsugineum HOM05D003859 ORTHO05D004927 4.3e-18 94.0 54 87.0
MD02G1195500 Malus domestica HOM05D003859 ORTHO05D004927 4.3e-18 94.0 54 87.0
unitig_0.g768 Utricularia gibba HOM05D003859 ORTHO05D004927 4.3e-18 94.0 54 87.0
Atru.chr5.384 Acer truncatum HOM05D003859 ORTHO05D004927 5.6e-18 93.6 54 87.0
MSTRG.4878 Avicennia marina HOM05D003859 ORTHO05D004927 5.6e-18 93.6 54 88.9
CiPaw.01G257400 Carya illinoinensis HOM05D003859 ORTHO05D004927 5.6e-18 93.6 54 87.0
ClCG06G000150 Citrullus lanatus HOM05D003859 ORTHO05D004927 5.6e-18 93.6 54 87.0
Oeu059223.1 Olea europaea HOM05D003859 ORTHO05D004927 5.6e-18 93.6 54 88.9
Peaxi162Scf00120g00061 Petunia axillaris HOM05D003859 ORTHO05D004927 5.6e-18 93.6 54 88.9
Potri.014G078100 Populus trichocarpa HOM05D003859 ORTHO05D004927 5.6e-18 93.6 54 88.9
Rhsim01G0155900 Rhododendron simsii HOM05D003859 ORTHO05D004927 5.6e-18 93.6 54 87.0
Sabra14G0054200 Salix brachista HOM05D003859 ORTHO05D004927 5.6e-18 93.6 54 88.9
CAN.G564.2 Capsicum annuum HOM05D003859 ORTHO05D004927 7.3e-18 93.2 54 87.0
SalBow7G2918 Salvia bowleyana HOM05D003859 ORTHO05D004927 7.3e-18 93.2 54 87.0
Zm00001eb318870 Zea mays HOM05D003859 ORTHO05D004927 7.3e-18 93.2 54 87.0
COL.COLO4_12637 Corchorus olitorius HOM05D003859 ORTHO05D004927 9.5e-18 92.8 54 85.2
Migut.B01674 Erythranthe guttata HOM05D003859 ORTHO05D004927 9.5e-18 92.8 54 85.2
FvH4_7g12910 Fragaria vesca HOM05D003859 ORTHO05D004927 9.5e-18 92.8 54 87.0
FAN06G4393 Fragaria x ananassa HOM05D003859 ORTHO05D004927 9.5e-18 92.8 54 87.0
Lj9C576G2 Lonicera japonica HOM05D003859 ORTHO05D004927 9.5e-18 92.8 54 92.6
Nitab4.5_0003356g0080 Nicotiana tabacum HOM05D003859 ORTHO05D004927 9.5e-18 92.8 54 88.9
SGA_v2.0_scaffold43G16458 Striga asiatica HOM05D003859 ORTHO05D004927 9.5e-18 92.8 54 87.0
TAR375G0972 Trochodendron aralioides HOM05D003859 ORTHO05D004927 9.5e-18 92.8 54 88.9
arahy.Tifrunner.gnm1.ann1.BEJL1T Arachis hypogaea HOM05D003859 ORTHO05D004927 1.2e-17 92.4 54 87.0
AUR62004282 Chenopodium quinoa HOM05D003859 ORTHO05D004927 1.2e-17 92.4 54 85.2
AUR62033375 Chenopodium quinoa HOM05D003859 ORTHO05D004927 1.2e-17 92.4 54 85.2
Ciclev10020733m.g Citrus clementina HOM05D003859 ORTHO05D004927 1.2e-17 92.4 54 85.2
Duzib133G1260 Durio zibethinus HOM05D003859 ORTHO05D004927 1.2e-17 92.4 54 85.2
SalBow5G1681 Salvia bowleyana HOM05D003859 ORTHO05D004927 1.2e-17 92.4 54 87.0
SalBow5G5147 Salvia bowleyana HOM05D003859 ORTHO05D004927 1.2e-17 92.4 54 87.0
Sc23g0003370 Simmondsia chinensis HOM05D003859 ORTHO05D004927 1.2e-17 92.4 54 85.2
HPP92_022606 Vanilla planifolia HOM05D003859 ORTHO05D004927 1.2e-17 92.4 54 87.0
EL10Ac1g00974 Beta vulgaris HOM05D003859 ORTHO05D004927 1.6e-17 92.0 54 83.3
Migut.N01415 Erythranthe guttata HOM05D003859 ORTHO05D004927 1.6e-17 92.0 54 85.2
Sed0011356 Sechium edule HOM05D003859 ORTHO05D004927 1.6e-17 92.0 54 85.2
vmacro13346 Vaccinium macrocarpon HOM05D003859 ORTHO05D004927 1.6e-17 92.0 54 85.2
Ah.05g175880 Amaranthus hybridus HOM05D003859 ORTHO05D004927 2.1e-17 91.7 54 83.3
MSTRG.20785 Avicennia marina HOM05D003859 ORTHO05D004927 2.1e-17 91.7 54 83.3
FAN10G1375 Fragaria x ananassa HOM05D003859 ORTHO05D004927 2.1e-17 91.7 54 85.2
PGR042G3304 Punica granatum HOM05D003859 ORTHO05D004927 2.1e-17 91.7 54 85.2
FAN01G2147 Fragaria x ananassa HOM05D003859 ORTHO05D004927 2.8e-17 91.3 54 85.2
FAN03G3139 Fragaria x ananassa HOM05D003859 ORTHO05D004927 2.8e-17 91.3 54 85.2
RcHm_v2.0_Chr1g0351991 Rosa chinensis HOM05D003859 ORTHO05D004927 2.8e-17 91.3 54 85.2
Sed0024161 Sechium edule HOM05D003859 ORTHO05D004927 2.8e-17 91.3 54 83.3
GSVIVG01027593001 Vitis vinifera HOM05D003859 ORTHO05D004927 2.8e-17 91.3 54 85.2
arahy.Tifrunner.gnm1.ann1.IDJ1ZL Arachis hypogaea HOM05D003859 ORTHO05D004927 3.6e-17 90.9 54 85.2
Duzib138G0997 Durio zibethinus HOM05D003859 ORTHO05D004927 3.6e-17 90.9 54 83.3
Hund16965 Selenicereus undatus HOM05D003859 ORTHO05D004927 3.6e-17 90.9 54 81.5
SGA_v2.0_scaffold11G05635 Striga asiatica HOM05D003859 ORTHO05D004927 3.6e-17 90.9 54 85.2
SGA_v2.0_scaffold95G28879 Striga asiatica HOM05D003859 ORTHO05D004927 3.6e-17 90.9 54 83.3
Manes.05G040800 Manihot esculenta HOM05D003859 ORTHO05D004927 4.7e-17 90.5 54 83.3
SMO146G0305 Selaginella moellendorffii HOM05D003859 ORTHO05D004927 4.7e-17 90.5 54 85.2
arahy.Tifrunner.gnm1.ann1.4LC8LU Arachis hypogaea HOM05D003859 ORTHO05D004927 6.2e-17 90.1 54 81.5
arahy.Tifrunner.gnm1.ann1.8U5IN0 Arachis hypogaea HOM05D003859 ORTHO05D004927 6.2e-17 90.1 54 81.5
CAN.G360.10 Capsicum annuum HOM05D003859 ORTHO05D004927 8.1e-17 89.7 54 85.2
Gohir.D12G106600 Gossypium hirsutum HOM05D003859 ORTHO05D004927 8.1e-17 89.7 54 81.5
Gorai.008G115800 Gossypium raimondii HOM05D003859 ORTHO05D004927 8.1e-17 89.7 54 81.5
Nitab4.5_0000258g0310 Nicotiana tabacum HOM05D003859 ORTHO05D004927 8.1e-17 89.7 54 85.2
Nitab4.5_0003865g0110 Nicotiana tabacum HOM05D003859 ORTHO05D010544 8.1e-17 89.7 54 85.2
Peaxi162Scf00716g00430 Petunia axillaris HOM05D003859 ORTHO05D010544 1.4e-16 89.0 54 83.3
Solyc05g050490.4 Solanum lycopersicum HOM05D003859 ORTHO05D004927 1.8e-16 88.6 54 83.3
Sopen05g028900 Solanum pennellii HOM05D003859 ORTHO05D004927 1.8e-16 88.6 54 83.3
PGSC0003DMG400007006 Solanum tuberosum HOM05D003859 ORTHO05D004927 1.8e-16 88.6 54 83.3
CBR_g28511 Chara braunii HOM05D003859 ORTHO05D004927 3.1e-16 87.8 54 81.5
Gohir.A12G103200 Gossypium hirsutum HOM05D003859 ORTHO05D004927 4.0e-16 87.4 54 79.6
Mapoly0021s0093 Marchantia polymorpha HOM05D003859 ORTHO05D004927 8.9e-16 86.3 54 79.6
Hma1.2p1_0132F.1_g060790 Hydrangea macrophylla HOM05D003859 ORTHO05D004927 4.4e-15 84.0 56 75.0
AagrBONN_evm.TU.Sc2ySwM_362.1092 Anthoceros agrestis HOM05D003859 ORTHO05D004927 5.8e-15 83.6 54 77.8
Pp3c14_22160 Physcomitrium patens HOM05D003859 ORTHO05D004927 7.5e-15 83.2 54 77.8
Pp3c17_16460 Physcomitrium patens HOM05D003859 ORTHO05D004927 7.5e-15 83.2 54 77.8
Sabra02G0120800 Salix brachista HOM05D003859 ORTHO05D004927 4.9e-14 80.5 54 79.6
CAN.G116.18 Capsicum annuum HOM05D003859 ORTHO05D028352 1.2e-12 75.9 56 73.2
SHI13484 Sapria himalayana HOM05D003859 ORTHO05D004927 2.1e-12 75.1 45 80.0
Cre03.g204800 Chlamydomonas reinhardtii HOM05D003859 ORTHO05D004927 2.7e-12 74.7 54 70.4
HanXRQChr00c1250g0578841 Helianthus annuus HOM05D003859 ORTHO05D004927 6.0e-12 73.6 36 100.0
FAN06G3289 Fragaria x ananassa HOM05D003859 ORTHO05D004927 7.8e-12 73.2 45 82.2
PRCOL_00004070 Prasinoderma coloniale HOM05D003859 ORTHO05D004927 1.6e-09 65.5 54 59.3
Cfa022626 Carpinus fangiana HOM05D003859 ORTHO05D004927 2.3e-08 61.6 53 54.7
Haze_27329 Corylus avellana HOM05D003859 ORTHO05D004927 6.8e-08 60.1 54 59.3


User provided reference genes

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