Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr00c0703g0576891 Helianthus annuus HOM05D001070 ORTHO05D002096 1.0e-174 616.7 332 100.0
HanXRQChr02g0059751 Helianthus annuus HOM05D001070 ORTHO05D005132 1.4e-174 616.3 331 100.0
HanXRQChr15g0465401 Helianthus annuus HOM05D001070 ORTHO05D002096 1.4e-174 616.3 331 100.0
HanXRQChr17g0569701 Helianthus annuus HOM05D001070 ORTHO05D005132 1.4e-174 616.3 331 100.0
HanXRQCPg0580321 Helianthus annuus HOM05D001070 ORTHO05D005132 1.4e-174 616.3 331 100.0
HanXRQChr17g0557721 Helianthus annuus HOM05D001070 ORTHO05D002096 5.1e-145 518.1 280 100.0
HanXRQChr08g0222861 Helianthus annuus HOM05D001070 ORTHO05D002096 2.3e-137 492.7 271 98.2
DCAR_032544 Daucus carota HOM05D001070 ORTHO05D002096 1.3e-79 300.8 352 52.8
TAR633G1337 Trochodendron aralioides HOM05D001070 ORTHO05D002096 9.1e-78 294.7 386 48.2
HanXRQChr15g0465501 Helianthus annuus HOM05D001070 ORTHO05D010233 8.5e-76 288.1 147 100.0
Nn304s46233 Nelumbo nucifera HOM05D001070 ORTHO05D002096 1.9e-75 287.0 332 57.8
HanXRQChr00c0336g0573731 Helianthus annuus HOM05D001070 ORTHO05D002096 4.7e-74 282.3 160 100.0
Solyc00g500043.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.2e-69 267.7 394 43.4
Solyc00g500088.1 Solanum lycopersicum HOM05D001070 ORTHO05D010233 1.2e-69 267.7 394 43.4
Solyc00g500126.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.2e-69 267.7 394 43.4
Solyc00g500278.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.2e-69 267.7 394 43.4
Solyc00g500324.1 Solanum lycopersicum HOM05D001070 ORTHO05D010233 1.2e-69 267.7 394 43.4
BcaC04g20701 Brassica carinata HOM05D001070 ORTHO05D002096 4.4e-64 249.2 365 45.8
BolSC35t60710H Brassica oleracea HOM05D001070 ORTHO05D002096 4.9e-63 245.7 365 45.5
PGR111G0057 Punica granatum HOM05D001070 ORTHO05D002096 4.9e-63 245.7 382 42.4
PSO548G0067 Papaver somniferum HOM05D001070 ORTHO05D002096 1.1e-62 244.6 344 48.5
PSO210G1984 Papaver somniferum HOM05D001070 ORTHO05D002096 1.8e-62 243.8 344 48.3
Solyc00g500191.1 Solanum lycopersicum HOM05D001070 ORTHO05D010233 3.1e-62 243.0 228 55.7
Ciclev10027640m.g Citrus clementina HOM05D001070 ORTHO05D002096 7.0e-62 241.9 378 42.6
EL10Ac5g11665 Beta vulgaris HOM05D001070 ORTHO05D002096 5.9e-61 238.8 302 47.7
EL10Ac7g17376 Beta vulgaris HOM05D001070 ORTHO05D002096 5.9e-61 238.8 302 47.7
Sc25g0002030 Simmondsia chinensis HOM05D001070 ORTHO05D002096 1.7e-55 220.7 229 52.8
HanXRQChr00c0379g0574331 Helianthus annuus HOM05D001070 ORTHO05D002096 1.2e-53 214.5 127 100.0
BraSC59t46556Z Brassica rapa HOM05D001070 ORTHO05D005132 9.5e-51 204.9 233 51.1
Lalb_Chr07g0191841 Lupinus albus HOM05D001070 ORTHO05D002096 8.0e-50 201.8 286 43.4
HanXRQChr15g0465511 Helianthus annuus HOM05D001070 ORTHO05D002096 9.8e-48 194.9 117 100.0
Lju5009P0T37 Lonicera japonica HOM05D001070 ORTHO05D002096 2.1e-45 187.2 214 50.5
CiPaw.01G098400 Carya illinoinensis HOM05D001070 ORTHO05D002096 4.6e-45 186.0 294 39.5
Medtr4g006080 Medicago truncatula HOM05D001070 ORTHO05D002096 4.6e-45 186.0 353 36.3
HanXRQChr11g0333751 Helianthus annuus HOM05D001070 ORTHO05D002096 1.0e-44 184.9 117 95.7
HanXRQChr11g0321221 Helianthus annuus HOM05D001070 ORTHO05D002096 3.6e-42 176.4 110 97.3
HanXRQChr17g0557701 Helianthus annuus HOM05D001070 ORTHO05D002096 8.1e-42 175.3 118 92.4
Duzib256G0005 Durio zibethinus HOM05D001070 ORTHO05D002096 8.3e-39 165.2 276 37.3
HanXRQChr00c0379g0574341 Helianthus annuus HOM05D001070 ORTHO05D002096 1.1e-38 164.9 83 100.0
HPP92_028431 Vanilla planifolia HOM05D001070 ORTHO05D002096 3.0e-36 156.8 225 42.7
TAR365G0787 Trochodendron aralioides HOM05D001070 ORTHO05D002096 7.3e-35 152.1 109 67.9
Hund27646 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.4e-33 147.9 259 39.0
Hund27834 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.4e-33 147.9 259 39.0
Hund29319 Selenicereus undatus HOM05D001070 ORTHO05D002096 3.1e-33 146.7 250 39.2
HanXRQChr00c0336g0573721 Helianthus annuus HOM05D001070 ORTHO05D010233 4.0e-33 146.4 72 100.0
Solyc11g021300.2 Solanum lycopersicum HOM05D001070 ORTHO05D010233 2.3e-28 130.6 138 52.2
HPP92_028416 Vanilla planifolia HOM05D041394 ORTHO05D002096 2.3e-28 130.6 214 39.3
ClCG11G009270 Citrullus lanatus HOM05D001070 ORTHO05D002096 1.2e-26 124.8 112 53.6
Solyc05g016220.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.8e-25 120.9 130 50.8
PGSC0003DMG400004187 Solanum tuberosum HOM05D001070 ORTHO05D002096 3.1e-25 120.2 224 37.1
Migut.D01246 Erythranthe guttata HOM05D001070 ORTHO05D010233 9.0e-25 118.6 137 49.6
SGA_v2.0_scaffold140G35506 Striga asiatica HOM05D001070 ORTHO05D002096 1.5e-24 117.9 272 37.5
Solyc08g016000.2 Solanum lycopersicum HOM05D001070 ORTHO05D002096 4.4e-24 116.3 114 54.4
Gohir.A04G053000 Gossypium hirsutum HOM05D001070 ORTHO05D002096 6.4e-23 112.5 93 59.1
DCAR_019125 Daucus carota HOM05D001070 ORTHO05D002096 4.2e-22 109.8 190 44.7
SalBow1G2240 Salvia bowleyana HOM05D001070 ORTHO05D005132 5.4e-22 109.4 138 47.1
Nitab4.5_0000172g2280 Nicotiana tabacum HOM05D001070 ORTHO05D010233 4.6e-21 106.3 138 45.7
Nn4g25224 Nelumbo nucifera HOM05D001070 ORTHO05D005132 1.3e-20 104.8 163 41.7
C02p28780 Brassica napus HOM05D001070 ORTHO05D010233 5.1e-20 102.8 143 45.5
C09p25520 Brassica napus HOM05D001070 ORTHO05D010233 5.1e-20 102.8 143 45.5
Oeu012762.2 Olea europaea HOM05D001070 ORTHO05D002096 6.6e-20 102.4 98 57.1
Ciclev10014004m.g Citrus clementina HOM05D001070 ORTHO05D010233 1.9e-19 100.9 138 44.9
GSVIVG01029582001 Vitis vinifera HOM05D001070 ORTHO05D010233 2.5e-19 100.5 119 47.9
SEGI_13637 Sequoiadendron giganteum HOM05D009451 ORTHO05D018118 2.0e-16 90.9 237 30.8
SEGI_26236 Sequoiadendron giganteum HOM05D009451 ORTHO05D018118 2.0e-16 90.9 237 30.8
SEGI_32990 Sequoiadendron giganteum HOM05D009451 ORTHO05D018118 2.0e-16 90.9 237 30.8
SEGI_38716 Sequoiadendron giganteum HOM05D009451 ORTHO05D018118 2.0e-16 90.9 237 30.8
SEGI_41548 Sequoiadendron giganteum HOM05D009451 ORTHO05D018118 2.0e-16 90.9 237 30.8
FAN09G0308 Fragaria x ananassa HOM05D001070 ORTHO05D010233 3.4e-16 90.1 148 40.5
Gohir.A05G323700 Gossypium hirsutum HOM05D001070 ORTHO05D002096 4.5e-16 89.7 103 47.6
SEGI_17643 Sequoiadendron giganteum HOM05D009451 ORTHO05D018118 9.9e-16 88.6 237 30.4
Oeu012820.1 Olea europaea HOM05D000533 ORTHO05D002807 2.2e-15 87.4 136 43.4
Solyc11g021310.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 4.9e-15 86.3 189 33.3
Nitab4.5_0023521g0010 Nicotiana tabacum HOM05D000388 ORTHO05D000473 1.9e-14 84.3 207 31.4
Lsat_1_v5_gn_0_20081 Lactuca sativa HOM05D001070 ORTHO05D010233 4.2e-14 83.2 82 59.8
Lsat_1_v5_gn_6_14481 Lactuca sativa HOM05D001070 ORTHO05D002096 7.1e-14 82.4 183 37.2
Nitab4.5_0004841g0070 Nicotiana tabacum HOM05D001070 ORTHO05D022991 1.2e-13 81.6 66 59.1
SEGI_02123 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 2.1e-13 80.9 174 33.3
TPR.G19445 Trifolium pratense HOM05D001070 ORTHO05D002096 2.7e-13 80.5 114 42.1
C07p33490 Brassica napus HOM05D001070 ORTHO05D002096 3.5e-13 80.1 97 48.5
Nitab4.5_0000172g2260 Nicotiana tabacum HOM05D001070 ORTHO05D002096 1.8e-12 77.8 88 48.9
SEGI_13178 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 1.8e-12 77.8 144 34.7
Hund29519 Selenicereus undatus HOM05D001070 ORTHO05D002096 6.7e-12 75.9 189 34.4
EL10Ac4g08269 Beta vulgaris HOM05D001070 ORTHO05D002096 1.1e-11 75.1 163 36.8
Nitab4.5_0004137g0050 Nicotiana tabacum HOM05D001070 ORTHO05D002096 1.1e-11 75.1 58 69.0
Nitab4.5_0004137g0040 Nicotiana tabacum HOM05D001070 ORTHO05D010233 2.5e-11 73.9 138 36.2
Solyc04g045540.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 3.3e-11 73.6 68 64.7
Ciclev10010879m.g Citrus clementina HOM05D001070 ORTHO05D002096 9.6e-11 72.0 68 58.8
Ciclev10013978m.g Citrus clementina HOM05D001070 ORTHO05D002096 9.6e-11 72.0 68 58.8
Ciclev10013980m.g Citrus clementina HOM05D001070 ORTHO05D002096 9.6e-11 72.0 68 58.8
Ciclev10013987m.g Citrus clementina HOM05D001070 ORTHO05D002096 9.6e-11 72.0 68 58.8
Ciclev10014002m.g Citrus clementina HOM05D001070 ORTHO05D002096 9.6e-11 72.0 68 58.8
Ciclev10014005m.g Citrus clementina HOM05D001070 ORTHO05D002096 9.6e-11 72.0 68 58.8
Ciclev10027654m.g Citrus clementina HOM05D001070 ORTHO05D002096 9.6e-11 72.0 68 58.8
Ciclev10030452m.g Citrus clementina HOM05D001070 ORTHO05D002096 9.6e-11 72.0 68 58.8
Peaxi162Scf01305g00039 Petunia axillaris HOM05D001070 ORTHO05D010233 1.3e-10 71.6 71 54.9
SEGI_36078 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 1.3e-10 71.6 122 36.9
MBI01_g06564_MAGBIO Magnolia biondii HOM05D001070 ORTHO05D002096 1.6e-10 71.2 118 39.0
Nn1g08628 Nelumbo nucifera HOM05D001070 ORTHO05D002096 1.6e-10 71.2 63 61.9
Psat0s2011g0040 Pisum sativum HOM05D000729 ORTHO05D001063 2.1e-10 70.9 152 34.2
Nn031s41609 Nelumbo nucifera HOM05D001070 ORTHO05D002096 4.8e-10 69.7 65 60.0
Nn064s42217 Nelumbo nucifera HOM05D001070 ORTHO05D002096 4.8e-10 69.7 65 60.0
Nn212s45207 Nelumbo nucifera HOM05D001070 ORTHO05D002096 4.8e-10 69.7 65 60.0
Peaxi162Scf00080g00516 Petunia axillaris HOM05D001070 ORTHO05D002096 4.8e-10 69.7 77 54.5
CAN.G929.2 Capsicum annuum HOM05D001070 ORTHO05D002096 6.2e-10 69.3 53 71.7
HanXRQChr17g0569781 Helianthus annuus HOM05D001070 ORTHO05D002096 1.1e-09 68.6 34 100.0
Potri.002G008176 Populus trichocarpa HOM05D001070 ORTHO05D002096 1.8e-09 67.8 58 62.1
Gohir.D03G074712 Gossypium hirsutum HOM05D001070 ORTHO05D002096 2.4e-09 67.4 75 54.7
Gohir.A09G046100 Gossypium hirsutum HOM05D001070 ORTHO05D002096 3.1e-09 67.0 66 56.1
PGR081G0002 Punica granatum HOM05D001070 ORTHO05D002096 3.1e-09 67.0 58 63.8
AL7G50370 Arabidopsis lyrata HOM05D001070 ORTHO05D002096 4.0e-09 66.6 60 65.0
CARHR282400 Cardamine hirsuta HOM05D001070 ORTHO05D002096 4.0e-09 66.6 60 65.0
Glyma.08G259600 Glycine max HOM05D001070 ORTHO05D002096 4.0e-09 66.6 66 48.5
Gohir.1Z049492 Gossypium hirsutum HOM05D001070 ORTHO05D002096 4.0e-09 66.6 116 38.8
Gohir.A03G072900 Gossypium hirsutum HOM05D001070 ORTHO05D002096 4.0e-09 66.6 116 38.8
PSO541G0682 Papaver somniferum HOM05D001070 ORTHO05D002096 4.0e-09 66.6 67 59.7
BolSC35t60697H Brassica oleracea HOM05D001070 ORTHO05D002096 6.9e-09 65.9 65 60.0
BraSC103t45423Z Brassica rapa HOM05D001070 ORTHO05D002096 6.9e-09 65.9 65 60.0
Gohir.A10G117450 Gossypium hirsutum HOM05D001070 ORTHO05D002096 9.0e-09 65.5 75 52.0
C09p25530 Brassica napus HOM05D001070 ORTHO05D002096 1.2e-08 65.1 60 63.3
BolSC29t60500H Brassica oleracea HOM05D001070 ORTHO05D002096 1.2e-08 65.1 60 63.3
BolSC29t60623H Brassica oleracea HOM05D001070 ORTHO05D002096 1.2e-08 65.1 60 63.3
BolSC35t60698H Brassica oleracea HOM05D001070 ORTHO05D002096 1.2e-08 65.1 60 63.3
BolSC44t60817H Brassica oleracea HOM05D001070 ORTHO05D002096 1.2e-08 65.1 60 63.3
BolSC44t60828H Brassica oleracea HOM05D001070 ORTHO05D002096 1.2e-08 65.1 60 63.3
BolSC45t60915H Brassica oleracea HOM05D001070 ORTHO05D002096 1.2e-08 65.1 60 63.3
BolSC46t60964H Brassica oleracea HOM05D001070 ORTHO05D002096 1.2e-08 65.1 60 63.3
BraSC138t45540Z Brassica rapa HOM05D001070 ORTHO05D002096 1.2e-08 65.1 60 63.3
A04p09360 Brassica napus HOM05D001070 ORTHO05D002096 2.0e-08 64.3 60 63.3
BolSC28t60312H Brassica oleracea HOM05D001070 ORTHO05D002096 2.0e-08 64.3 60 63.3
BolSC28t60368H Brassica oleracea HOM05D001070 ORTHO05D002096 2.0e-08 64.3 60 63.3
BraSC159t45727Z Brassica rapa HOM05D001070 ORTHO05D002096 2.0e-08 64.3 60 63.3
BraSC48t46237Z Brassica rapa HOM05D001070 ORTHO05D002096 2.0e-08 64.3 60 63.3
BraSC54t46367Z Brassica rapa HOM05D001070 ORTHO05D002096 2.0e-08 64.3 60 63.3
Gohir.A04G057652 Gossypium hirsutum HOM05D001070 ORTHO05D002096 2.0e-08 64.3 75 53.3
Peaxi162Scf00139g00015 Petunia axillaris HOM05D001070 ORTHO05D002096 3.4e-08 63.5 69 56.5
Solyc00g500084.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 3.4e-08 63.5 69 56.5
Solyc00g500196.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 3.4e-08 63.5 69 56.5
Solyc12g036550.3 Solanum lycopersicum HOM05D001070 ORTHO05D002096 3.4e-08 63.5 69 56.5
Solyc01g017240.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 4.5e-08 63.2 50 70.0
Nitab4.5_0012234g0030 Nicotiana tabacum HOM05D001070 ORTHO05D002096 5.8e-08 62.8 69 55.1
RcHm_v2.0_Chr4g0392791 Rosa chinensis HOM05D001070 ORTHO05D002096 5.8e-08 62.8 63 57.1
Solyc10g062235.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 5.8e-08 62.8 69 53.6
Nitab4.5_0000729g0030 Nicotiana tabacum HOM05D001070 ORTHO05D010233 9.9e-08 62.0 68 47.1
BraSC25t45916Z Brassica rapa HOM05D001070 ORTHO05D002096 1.3e-07 61.6 56 64.3
Potri.011G073900 Populus trichocarpa HOM05D001070 ORTHO05D002096 2.9e-07 60.5 69 52.2
Solyc02g011850.3 Solanum lycopersicum HOM05D001070 ORTHO05D010233 3.8e-07 60.1 178 29.2
TPR.G31143 Trifolium pratense HOM05D001070 ORTHO05D010233 3.8e-07 60.1 153 34.6
Gohir.D01G134260 Gossypium hirsutum HOM05D001070 ORTHO05D010233 4.9e-07 59.7 69 52.2
Peaxi162Scf00080g00515 Petunia axillaris HOM05D001070 ORTHO05D010233 4.9e-07 59.7 145 35.2
BolSC29t60620H Brassica oleracea HOM05D001070 ORTHO05D002096 6.4e-07 59.3 55 63.6
BolSC37t60788H Brassica oleracea HOM05D001070 ORTHO05D002096 6.4e-07 59.3 55 63.6
Glyma.02G177300 Glycine max HOM05D001070 ORTHO05D010233 6.4e-07 59.3 66 51.5
SalBow1G3373 Salvia bowleyana HOM05D001070 ORTHO05D002096 1.1e-06 58.5 66 48.5
SalBow1G6555 Salvia bowleyana HOM05D001070 ORTHO05D002096 1.1e-06 58.5 66 48.5
Hund08795 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.1e-06 58.5 172 32.0
Hund17849 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.1e-06 58.5 172 32.0
Hund27460 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.1e-06 58.5 172 32.0
Hund27754 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.1e-06 58.5 172 32.0
Hund27829 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.1e-06 58.5 172 32.0
Hund28436 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.1e-06 58.5 172 32.0
Hund28590 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.1e-06 58.5 172 32.0
Hund28611 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.1e-06 58.5 172 32.0
Hund29746 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.1e-06 58.5 172 32.0
SEGI_27064 Sequoiadendron giganteum HOM05D009451 ORTHO05D018118 3.2e-06 57.0 190 27.4
BraSC138t45529Z Brassica rapa HOM05D001070 ORTHO05D002096 9.3e-06 55.5 57 59.6


User provided reference genes

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