Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr00c0690g0576751 Helianthus annuus HOM05D005034 ORTHO05D006234 3.1e-142 508.4 260 100.0
HanXRQChr02g0059701 Helianthus annuus HOM05D005034 ORTHO05D006234 1.2e-133 479.9 323 80.5
HanXRQChr05g0152421 Helianthus annuus HOM05D005034 ORTHO05D006234 1.2e-133 479.9 323 80.5
HanXRQChr06g0182991 Helianthus annuus HOM05D005034 ORTHO05D006234 1.2e-133 479.9 323 80.5
HanXRQCPg0580361 Helianthus annuus HOM05D005034 ORTHO05D006234 1.2e-133 479.9 323 80.5
HanXRQChr11g0323731 Helianthus annuus HOM05D005034 ORTHO05D006234 1.3e-132 476.5 307 83.7
HanXRQChr09g0258531 Helianthus annuus HOM05D005034 ORTHO05D006234 6.2e-114 414.5 307 75.9
CAN.G1045.13 Capsicum annuum HOM05D005034 ORTHO05D006234 5.1e-108 394.8 314 68.5
CAN.G134.8 Capsicum annuum HOM05D005034 ORTHO05D006234 5.1e-108 394.8 314 68.5
CAN.G1526.4 Capsicum annuum HOM05D005034 ORTHO05D006234 5.1e-108 394.8 314 68.5
CAN.G278.5 Capsicum annuum HOM05D005034 ORTHO05D006234 5.1e-108 394.8 314 68.5
Lj2P1238T83 Lonicera japonica HOM05D005034 ORTHO05D006234 4.3e-107 391.7 318 67.0
CAN.G413.9 Capsicum annuum HOM05D005034 ORTHO05D006234 7.3e-107 391.0 314 67.8
DCAR_032535 Daucus carota HOM05D005034 ORTHO05D006234 8.1e-106 387.5 322 67.4
PSO548G0041 Papaver somniferum HOM05D005034 ORTHO05D006234 7.6e-104 380.9 320 64.4
Gohir.1Z049831 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.3e-103 380.2 319 65.2
Gohir.A02G134200 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.3e-103 380.2 319 65.2
PGR111G0056 Punica granatum HOM05D005034 ORTHO05D006234 3.8e-103 378.6 318 65.1
SalBow1G5942 Salvia bowleyana HOM05D005034 ORTHO05D006234 6.4e-103 377.9 313 66.5
Nn064s42213 Nelumbo nucifera HOM05D005034 ORTHO05D006234 4.2e-102 375.2 316 64.9
Nn212s45210 Nelumbo nucifera HOM05D005034 ORTHO05D006234 4.2e-102 375.2 316 64.9
Lalb_Chr07g0191731 Lupinus albus HOM05D005034 ORTHO05D006234 4.6e-101 371.7 283 68.6
HanXRQChr13g0413491 Helianthus annuus HOM05D005034 ORTHO05D006234 1.7e-100 369.8 268 76.1
LjContig00318g0021446 Lotus japonicus HOM05D005034 ORTHO05D006234 1.5e-99 366.7 321 60.7
LjContig00319g0026028 Lotus japonicus HOM05D005034 ORTHO05D006234 1.5e-99 366.7 321 60.7
Medtr4g006130 Medicago truncatula HOM05D005034 ORTHO05D006234 1.1e-97 360.5 321 60.4
Peaxi162Scf01164g00036 Petunia axillaris HOM05D005034 ORTHO05D006234 1.1e-97 360.5 326 62.6
Sed0013321 Sechium edule HOM05D005034 ORTHO05D006234 1.1e-97 360.5 306 63.1
Sed0020615 Sechium edule HOM05D005034 ORTHO05D006234 2.4e-97 359.4 301 64.5
ATCG01040 Arabidopsis thaliana HOM05D005034 ORTHO05D006234 1.2e-93 347.1 326 58.9
C07p33420 Brassica napus HOM05D005034 ORTHO05D006234 6.0e-93 344.7 326 58.3
C09p40380 Brassica napus HOM05D005034 ORTHO05D006234 6.0e-93 344.7 326 58.3
BolSC29t60503H Brassica oleracea HOM05D005034 ORTHO05D006234 6.0e-93 344.7 326 58.3
BolSC35t60695H Brassica oleracea HOM05D005034 ORTHO05D006234 6.0e-93 344.7 326 58.3
BolSC35t60701H Brassica oleracea HOM05D005034 ORTHO05D006234 6.0e-93 344.7 326 58.3
BolSC46t60961H Brassica oleracea HOM05D005034 ORTHO05D006234 6.0e-93 344.7 326 58.3
BolSC47t61067H Brassica oleracea HOM05D005034 ORTHO05D006234 6.0e-93 344.7 326 58.3
BraSC103t45426Z Brassica rapa HOM05D005034 ORTHO05D006234 6.0e-93 344.7 326 58.3
BraSC179t45777Z Brassica rapa HOM05D005034 ORTHO05D006234 6.0e-93 344.7 326 58.3
BraSC25t45907Z Brassica rapa HOM05D005034 ORTHO05D006234 6.0e-93 344.7 326 58.3
BraSC59t46548Z Brassica rapa HOM05D005034 ORTHO05D006234 6.0e-93 344.7 326 58.3
BolSC49t61140H Brassica oleracea HOM05D005034 ORTHO05D006234 3.0e-92 342.4 324 58.0
arahy.Tifrunner.gnm1.ann1.ZFUC3L Arachis hypogaea HOM05D005034 ORTHO05D006234 6.7e-92 341.3 321 58.6
BolSC29t60543H Brassica oleracea HOM05D005034 ORTHO05D006234 1.6e-90 336.7 325 57.2
HanXRQChr17g0557781 Helianthus annuus HOM05D005034 ORTHO05D006234 2.0e-88 329.7 306 64.1
Oeu010692.1 Olea europaea HOM05D005034 ORTHO05D006234 4.2e-86 322.0 217 76.0
Gohir.D03G077700 Gossypium hirsutum HOM05D005034 ORTHO05D006234 4.6e-85 318.5 273 62.6
Migut.D01256 Erythranthe guttata HOM05D005034 ORTHO05D006234 1.6e-82 310.1 220 71.4
Gohir.D01G134300 Gossypium hirsutum HOM05D005034 ORTHO05D006234 2.8e-82 309.3 319 55.8
Gohir.A10G117233 Gossypium hirsutum HOM05D005034 ORTHO05D006234 5.3e-81 305.1 280 61.1
GSVIVG01004975001 Vitis vinifera HOM05D005034 ORTHO05D006234 6.5e-79 298.1 217 69.6
CSS0025903 Camellia sinensis var. sinensis HOM05D005034 ORTHO05D006234 8.4e-79 297.7 270 63.3
BraSC138t45537Z Brassica rapa HOM05D005034 ORTHO05D006234 1.0e-76 290.8 302 54.6
Sed0006489 Sechium edule HOM05D005034 ORTHO05D006234 2.8e-74 282.7 293 54.3
MBI10_g47592_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 2.1e-69 266.5 242 62.0
HanXRQChr09g0251521 Helianthus annuus HOM05D005034 ORTHO05D006234 3.6e-69 265.8 137 100.0
Ciclev10010882m.g Citrus clementina HOM05D005034 ORTHO05D006234 6.7e-68 261.5 210 62.9
Ciclev10018423m.g Citrus clementina HOM05D005034 ORTHO05D006234 6.7e-68 261.5 210 62.9
Ciclev10027633m.g Citrus clementina HOM05D005034 ORTHO05D006234 6.7e-68 261.5 210 62.9
Ciclev10027652m.g Citrus clementina HOM05D005034 ORTHO05D006234 6.7e-68 261.5 210 62.9
Ciclev10030457m.g Citrus clementina HOM05D005034 ORTHO05D006234 6.7e-68 261.5 210 62.9
Lj9P89T19 Lonicera japonica HOM05D005034 ORTHO05D006234 4.1e-65 252.3 166 80.7
HanXRQChr08g0212001 Helianthus annuus HOM05D005034 ORTHO05D006234 5.9e-64 248.4 128 100.0
Solyc00g500085.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 1.0e-63 247.7 164 80.5
Potri.001G342966 Populus trichocarpa HOM05D005034 ORTHO05D006234 6.5e-63 245.0 168 75.6
MBI10_g47591_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 3.6e-61 239.2 194 67.0
Pp3c2_30980 Physcomitrium patens HOM05D005034 ORTHO05D006234 3.6e-61 239.2 285 48.8
CAN.G8.23 Capsicum annuum HOM05D005034 ORTHO05D006234 3.3e-59 232.6 206 62.1
BolSC37t60790H Brassica oleracea HOM05D005034 ORTHO05D006234 3.1e-57 226.1 247 51.4
HanXRQChr03g0073081 Helianthus annuus HOM05D005034 ORTHO05D006234 2.2e-55 219.9 131 89.3
BraSC143t45663Z Brassica rapa HOM05D005034 ORTHO05D006234 1.1e-54 217.6 169 69.8
RcHm_v2.0_CPg0502821 Rosa chinensis HOM05D005034 ORTHO05D006234 1.1e-54 217.6 147 75.5
BolC9t56928H Brassica oleracea HOM05D005034 ORTHO05D006234 2.7e-53 213.0 170 68.8
Solyc11g021210.2 Solanum lycopersicum HOM05D005034 ORTHO05D006234 1.8e-49 200.3 166 65.7
Ciclev10013963m.g Citrus clementina HOM05D005034 ORTHO05D006234 4.1e-49 199.1 210 52.4
CAN.G939.6 Capsicum annuum HOM05D005034 ORTHO05D006234 5.0e-47 192.2 177 60.5
Prupe.5G061000 Prunus persica HOM05D005034 ORTHO05D006234 4.2e-46 189.1 130 75.4
PGSC0003DMG400029012 Solanum tuberosum HOM05D005034 ORTHO05D006234 2.3e-44 183.3 173 59.0
MCO12G235 Micromonas commoda HOM05D005034 ORTHO05D006234 2.6e-43 179.9 284 38.0
CAN.G1431.1 Capsicum annuum HOM05D005034 ORTHO05D006234 5.3e-41 172.2 163 59.5
CAN.G424.20 Capsicum annuum HOM05D005034 ORTHO05D006234 5.3e-41 172.2 163 59.5
HanXRQChr01g0020081 Helianthus annuus HOM05D005034 ORTHO05D006234 1.6e-40 170.6 79 100.0
Eucgr.C03526 Eucalyptus grandis HOM05D005034 ORTHO05D006234 2.9e-39 166.4 188 52.1
Hma1.2p1_0201F.1_g086105 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 2.9e-39 166.4 81 91.4
Hma1.2p1_0201F.1_g086120 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 2.9e-39 166.4 81 91.4
arahy.Tifrunner.gnm1.ann1.RW0ZF5 Arachis hypogaea HOM05D005034 ORTHO05D006234 5.0e-39 165.6 130 66.2
Gohir.D08G145250 Gossypium hirsutum HOM05D005034 ORTHO05D006234 8.5e-39 164.9 82 89.0
PRCOL_00005002 Prasinoderma coloniale HOM05D005034 ORTHO05D006234 1.1e-38 164.5 294 36.1
RcHm_v2.0_Chr5g0017241 Rosa chinensis HOM05D005034 ORTHO05D006234 1.9e-38 163.7 171 54.4
Gohir.D05G311850 Gossypium hirsutum HOM05D005034 ORTHO05D006234 7.2e-38 161.8 95 80.0
Hma1.2p1_0665F.1_g199050 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 9.4e-38 161.4 91 89.0
Gorai.003G181700 Gossypium raimondii HOM05D005034 ORTHO05D006234 8.0e-37 158.3 78 88.5
Gorai.002G058800 Gossypium raimondii HOM05D005034 ORTHO05D006234 1.4e-36 157.5 145 57.9
Gohir.D03G074401 Gossypium hirsutum HOM05D005034 ORTHO05D006234 3.0e-36 156.4 145 57.9
Gorai.009G333000 Gossypium raimondii HOM05D005034 ORTHO05D006234 3.0e-36 156.4 82 85.4
Solyc08g022180.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 4.4e-35 152.5 91 74.7
Gohir.D03G171050 Gossypium hirsutum HOM05D005034 ORTHO05D006234 5.7e-35 152.1 78 85.9
Nitab4.5_0000100g0130 Nicotiana tabacum HOM05D005034 ORTHO05D006234 2.8e-34 149.8 109 71.6
Phvul.002G050101 Phaseolus vulgaris HOM05D005034 ORTHO05D006234 2.8e-34 149.8 100 69.0
Lalb_Chr23g0274781 Lupinus albus HOM05D005034 ORTHO05D006234 2.4e-33 146.7 179 48.6
Manes.18G138354 Manihot esculenta HOM05D005034 ORTHO05D006234 3.1e-33 146.4 95 75.8
HanXRQChr01g0020091 Helianthus annuus HOM05D005034 ORTHO05D006234 7.0e-33 145.2 100 82.0
HanXRQChr08g0211991 Helianthus annuus HOM05D005034 ORTHO05D006234 1.6e-32 144.1 68 100.0
Lsat_1_v5_gn_5_11321 Lactuca sativa HOM05D005034 ORTHO05D006234 3.8e-31 139.4 85 80.0
Hund25564 Selenicereus undatus HOM05D005034 ORTHO05D006234 3.8e-31 139.4 198 50.5
Medtr4g006180 Medicago truncatula HOM05D005034 ORTHO05D006234 2.5e-30 136.7 129 55.8
CARHR178430 Cardamine hirsuta HOM05D005034 ORTHO05D006234 1.6e-29 134.0 81 74.1
BolC2t10593H Brassica oleracea HOM05D005034 ORTHO05D006234 2.1e-29 133.7 110 66.4
arahy.Tifrunner.gnm1.ann1.4P2RM7 Arachis hypogaea HOM05D005034 ORTHO05D006234 1.4e-28 131.0 136 52.9
BolC6t36207H Brassica oleracea HOM05D005034 ORTHO05D006234 8.3e-26 121.7 97 66.0
SMO086G0050 Selaginella moellendorffii HOM05D005034 ORTHO05D006234 8.3e-26 121.7 269 36.1
Nn1g08156 Nelumbo nucifera HOM05D005034 ORTHO05D006234 8.6e-23 111.7 56 85.7
Lalb_Chr18g0049451 Lupinus albus HOM05D005034 ORTHO05D006234 5.6e-22 109.0 102 59.8
Medtr0002s0180 Medicago truncatula HOM05D005034 ORTHO05D006234 7.3e-22 108.6 59 79.7
HanXRQChr00c0718g0576991 Helianthus annuus HOM05D005034 ORTHO05D006234 2.1e-21 107.1 53 92.5
Lalb_Chr05g0227101 Lupinus albus HOM05D005034 ORTHO05D006234 6.1e-21 105.5 66 78.8
Hma1.2p1_0382F.1_g140190 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 1.4e-20 104.4 53 90.6
Nitab4.5_0001130g0160 Nicotiana tabacum HOM05D005034 ORTHO05D006234 4.0e-20 102.8 66 84.8
Psat0s8829g0120 Pisum sativum HOM05D005034 ORTHO05D006234 3.2e-17 93.2 45 84.4
Nitab4.5_0001446g0070 Nicotiana tabacum HOM05D005034 ORTHO05D006234 2.0e-16 90.5 85 63.5
Eucgr.K01772 Eucalyptus grandis HOM05D005034 ORTHO05D006234 3.0e-15 86.7 60 75.0
BolSC45t60912H Brassica oleracea HOM05D005034 ORTHO05D006234 1.1e-14 84.7 139 39.6
Migut.L00236 Erythranthe guttata HOM05D005034 ORTHO05D006234 9.5e-14 81.6 36 94.4
Migut.L00238 Erythranthe guttata HOM05D005034 ORTHO05D006234 9.5e-14 81.6 36 94.4
Migut.L00237 Erythranthe guttata HOM05D005034 ORTHO05D006234 6.2e-13 79.0 36 88.9
Eucgr.J01554 Eucalyptus grandis HOM05D005034 ORTHO05D006234 2.3e-12 77.0 67 59.7
HanXRQChr00c0495g0575141 Helianthus annuus HOM05D005034 ORTHO05D006234 4.4e-11 72.8 128 43.0
arahy.Tifrunner.gnm1.ann1.5N7P5J Arachis hypogaea HOM05D005034 ORTHO05D006234 1.9e-09 67.4 52 67.3
Nitab4.5_0001130g0150 Nicotiana tabacum HOM05D005034 ORTHO05D006234 1.9e-09 67.4 33 87.9
HanXRQChr00c0504g0575291 Helianthus annuus HOM05D005034 ORTHO05D006234 2.4e-09 67.0 37 100.0
Nitab4.5_0007979g0110 Nicotiana tabacum HOM05D005034 ORTHO05D006234 3.2e-09 66.6 48 79.2
CARHR178440 Cardamine hirsuta HOM05D005034 ORTHO05D006234 5.4e-09 65.9 43 81.4
Medtr4g050940 Medicago truncatula HOM05D001243 ORTHO05D000843 1.2e-08 64.7 46 69.6
Gohir.D10G247550 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.3e-07 61.2 41 70.7
Solyc00g500194.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 2.3e-07 60.5 40 75.0
Solyc02g150101.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 6.6e-07 58.9 56 57.1
Gorai.011G286000 Gossypium raimondii HOM05D005034 ORTHO05D006234 1.9e-06 57.4 41 65.9
MBI19_g35567_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 5.6e-06 55.8 23 95.7
CAN.G1045.14 Capsicum annuum HOM05D005034 ORTHO05D006234 9.5e-06 55.1 50 66.0


User provided reference genes

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