Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr00c0593g0576441 Helianthus annuus HOM05D000445 ORTHO05D000314 1.3e-85 319.7 162 100.0
HanXRQChr00c0533g0575551 Helianthus annuus HOM05D000445 ORTHO05D000314 6.5e-61 237.7 132 93.9
HanXRQChr04g0127431 Helianthus annuus HOM05D000445 ORTHO05D000314 8.4e-53 210.7 146 77.4
HanXRQChr00c0349g0573991 Helianthus annuus HOM05D000445 ORTHO05D000314 9.0e-47 190.7 147 72.1
HanXRQChr00c0394g0574511 Helianthus annuus HOM05D000445 ORTHO05D000314 9.0e-47 190.7 147 72.1
HanXRQChr00c0451g0574821 Helianthus annuus HOM05D000445 ORTHO05D000314 9.0e-47 190.7 147 72.1
HanXRQChr00c0454g0574911 Helianthus annuus HOM05D000445 ORTHO05D000314 9.0e-47 190.7 147 72.1
HanXRQChr00c0524g0575411 Helianthus annuus HOM05D000445 ORTHO05D000314 9.0e-47 190.7 147 72.1
HanXRQChr01g0020161 Helianthus annuus HOM05D000445 ORTHO05D000314 9.0e-47 190.7 147 72.1
HanXRQChr05g0152341 Helianthus annuus HOM05D000445 ORTHO05D000314 9.0e-47 190.7 147 72.1
HanXRQChr11g0321171 Helianthus annuus HOM05D000445 ORTHO05D000314 9.0e-47 190.7 147 72.1
HanXRQChr11g0327091 Helianthus annuus HOM05D000445 ORTHO05D000314 9.0e-47 190.7 147 72.1
HanXRQChr12g0369911 Helianthus annuus HOM05D000445 ORTHO05D000314 9.0e-47 190.7 147 72.1
HanXRQChr13g0416601 Helianthus annuus HOM05D000445 ORTHO05D000314 9.0e-47 190.7 147 72.1
HanXRQChr13g0418951 Helianthus annuus HOM05D000445 ORTHO05D000314 9.0e-47 190.7 147 72.1
HanXRQChr15g0474951 Helianthus annuus HOM05D000445 ORTHO05D000314 9.0e-47 190.7 147 72.1
HanXRQCPg0580251 Helianthus annuus HOM05D000445 ORTHO05D000314 9.0e-47 190.7 147 72.1
HanXRQCPg0580471 Helianthus annuus HOM05D000445 ORTHO05D000314 9.0e-47 190.7 147 72.1
HanXRQChr10g0284471 Helianthus annuus HOM05D000445 ORTHO05D000314 2.0e-46 189.5 138 74.6
HanXRQChr11g0336101 Helianthus annuus HOM05D000445 ORTHO05D000314 4.5e-46 188.3 147 71.4
HanXRQChr11g0336121 Helianthus annuus HOM05D000445 ORTHO05D000314 4.5e-46 188.3 147 71.4
HanXRQChr11g0333801 Helianthus annuus HOM05D000445 ORTHO05D000314 7.7e-46 187.6 121 83.5
Nitab4.5_0023562g0020 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.7e-45 186.4 113 86.7
Lsat_1_v5_gn_3_105620 Lactuca sativa HOM05D000445 ORTHO05D000314 1.6e-43 179.9 142 71.1
Lsat_1_v5_gn_3_13441 Lactuca sativa HOM05D000445 ORTHO05D000314 1.6e-43 179.9 138 72.5
Lsat_1_v5_gn_8_26500 Lactuca sativa HOM05D000445 ORTHO05D000314 1.6e-43 179.9 138 72.5
Lsat_1_v5_gn_9_18701 Lactuca sativa HOM05D000445 ORTHO05D000314 1.6e-43 179.9 138 72.5
Hma1.2p1_0192F.1_g083680 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 5.1e-42 174.9 141 69.5
Hma1.2p1_0192F.1_g083690 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 5.1e-42 174.9 141 69.5
Hma1.2p1_4210F.1_g338452 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 5.1e-42 174.9 141 69.5
PGR111G0085 Punica granatum HOM05D000445 ORTHO05D000314 8.8e-42 174.1 141 68.8
PGR111G0100 Punica granatum HOM05D000445 ORTHO05D000314 8.8e-42 174.1 141 68.8
BolSC47t61053H Brassica oleracea HOM05D000445 ORTHO05D000314 1.1e-41 173.7 113 84.1
Gohir.A04G039060 Gossypium hirsutum HOM05D000445 ORTHO05D000314 1.1e-41 173.7 141 68.1
HanXRQChr00c0165g0572211 Helianthus annuus HOM05D000445 ORTHO05D000314 2.5e-41 172.6 98 89.8
LjContig00318g0022366 Lotus japonicus HOM05D000445 ORTHO05D000314 3.3e-41 172.2 141 69.5
LjContig00319g0026737 Lotus japonicus HOM05D000445 ORTHO05D000314 3.3e-41 172.2 141 69.5
Lj4g0020232 Lotus japonicus HOM05D000445 ORTHO05D000314 1.3e-40 170.2 141 68.8
ATR0258G003 Amborella trichopoda HOM05D000445 ORTHO05D000314 2.2e-40 169.5 143 67.1
Gohir.D01G101865 Gossypium hirsutum HOM05D000445 ORTHO05D000314 4.8e-40 168.3 141 66.0
LjContig00489g0008652 Lotus japonicus HOM05D000445 ORTHO05D000314 4.8e-40 168.3 98 89.8
Sc05g0004090 Simmondsia chinensis HOM05D000445 ORTHO05D000314 4.8e-40 168.3 106 84.9
Sc25g0001980 Simmondsia chinensis HOM05D000445 ORTHO05D000314 4.8e-40 168.3 106 84.9
Nitab4.5_0000223g0190 Nicotiana tabacum HOM05D000445 ORTHO05D000314 8.2e-40 167.5 105 85.7
Solyc00g500037.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.1e-39 167.2 98 89.8
Solyc00g500046.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.1e-39 167.2 98 89.8
Solyc00g500081.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.1e-39 167.2 98 89.8
Solyc00g500128.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.1e-39 167.2 98 89.8
Solyc00g500198.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.1e-39 167.2 98 89.8
Solyc00g500327.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.1e-39 167.2 98 89.8
unitig_91.g26530 Utricularia gibba HOM05D000445 ORTHO05D000314 5.3e-39 164.9 141 67.4
Lsat_1_v5_gn_9_42020 Lactuca sativa HOM05D000445 ORTHO05D000314 2.6e-38 162.5 95 88.4
arahy.Tifrunner.gnm1.ann1.U896IL Arachis hypogaea HOM05D000445 ORTHO05D000314 1.7e-37 159.8 141 65.2
Lalb_Chr07g0191931 Lupinus albus HOM05D000445 ORTHO05D000314 2.2e-37 159.5 103 84.5
Nn070s42380 Nelumbo nucifera HOM05D000445 ORTHO05D000314 2.2e-37 159.5 153 64.7
Nn233s45563 Nelumbo nucifera HOM05D000445 ORTHO05D000314 3.8e-37 158.7 143 65.0
Nn269s46007 Nelumbo nucifera HOM05D000445 ORTHO05D000314 3.8e-37 158.7 143 65.0
arahy.Tifrunner.gnm1.ann1.Z1U5RE Arachis hypogaea HOM05D000445 ORTHO05D000314 5.0e-37 158.3 141 64.5
RcHm_v2.0_CPg0501801 Rosa chinensis HOM05D000445 ORTHO05D000314 5.0e-37 158.3 141 63.8
RcHm_v2.0_CPg0502611 Rosa chinensis HOM05D000445 ORTHO05D000314 5.0e-37 158.3 141 63.8
CAN.G413.6 Capsicum annuum HOM05D000445 ORTHO05D000314 8.5e-37 157.5 98 83.7
TAR383G0379 Trochodendron aralioides HOM05D000445 ORTHO05D000314 7.2e-36 154.5 143 63.6
ATCG00860 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 1.2e-35 153.7 98 85.7
ATCG01280 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 1.2e-35 153.7 98 85.7
CARHR282560 Cardamine hirsuta HOM05D000445 ORTHO05D000314 1.2e-35 153.7 98 85.7
CsaV3_UNG209000 Cucumis sativus L. HOM05D000445 ORTHO05D000314 1.6e-35 153.3 141 63.1
Potri.013G143400 Populus trichocarpa HOM05D000445 ORTHO05D000314 2.7e-35 152.5 107 76.6
SabraPtG0004600 Salix brachista HOM05D000445 ORTHO05D000314 2.7e-35 152.5 107 76.6
SabraPtG0006900 Salix brachista HOM05D000445 ORTHO05D000314 2.7e-35 152.5 107 76.6
EL10As18g24166 Beta vulgaris HOM05D000445 ORTHO05D000314 4.7e-35 151.8 106 79.2
C06p21350 Brassica napus HOM05D000445 ORTHO05D000314 6.1e-35 151.4 98 84.7
BolSC29t60491H Brassica oleracea HOM05D000445 ORTHO05D000314 6.1e-35 151.4 98 84.7
BraSC103t45415Z Brassica rapa HOM05D000445 ORTHO05D000314 6.1e-35 151.4 98 84.7
BraSC103t45439Z Brassica rapa HOM05D000445 ORTHO05D000314 6.1e-35 151.4 98 84.7
BraSC138t45546Z Brassica rapa HOM05D000445 ORTHO05D000314 6.1e-35 151.4 98 84.7
BraSC143t45643Z Brassica rapa HOM05D000445 ORTHO05D000314 6.1e-35 151.4 98 84.7
BraSC25t45893Z Brassica rapa HOM05D000445 ORTHO05D000314 6.1e-35 151.4 98 84.7
C04p22510 Brassica napus HOM05D000445 ORTHO05D000314 7.9e-35 151.0 104 79.8
Lsat_1_v5_gn_7_67161 Lactuca sativa HOM05D000445 ORTHO05D000314 3.0e-34 149.1 139 63.3
RcHm_v2.0_Chr2g0118441 Rosa chinensis HOM05D000445 ORTHO05D000314 3.3e-33 145.6 98 78.6
Solyc11g021063.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 4.4e-33 145.2 113 75.2
DCAR_032529 Daucus carota HOM05D000445 ORTHO05D000314 2.8e-32 142.5 108 76.9
DCAR_032547 Daucus carota HOM05D000445 ORTHO05D000314 2.8e-32 142.5 108 76.9
PSO548G0004 Papaver somniferum HOM05D000445 ORTHO05D000314 3.7e-32 142.1 102 79.4
PSO548G0115 Papaver somniferum HOM05D000445 ORTHO05D000314 3.7e-32 142.1 102 79.4
Thhalv10001808m.g Eutrema salsugineum HOM05D000445 ORTHO05D000314 8.2e-32 141.0 89 85.4
Ah.10g027230 Amaranthus hybridus HOM05D000445 ORTHO05D000314 2.4e-31 139.4 106 72.6
Ah.10g027290 Amaranthus hybridus HOM05D000445 ORTHO05D000314 2.4e-31 139.4 106 72.6
Ah.10g027420 Amaranthus hybridus HOM05D000445 ORTHO05D000314 2.4e-31 139.4 106 72.6
Ah.10g027670 Amaranthus hybridus HOM05D000445 ORTHO05D000314 2.4e-31 139.4 106 72.6
Ah.10g027730 Amaranthus hybridus HOM05D000445 ORTHO05D000314 2.4e-31 139.4 106 72.6
Gohir.A02G069301 Gossypium hirsutum HOM05D000445 ORTHO05D000314 1.7e-29 133.3 77 88.3
SalBow1G2507 Salvia bowleyana HOM05D000445 ORTHO05D000314 3.6e-27 125.6 118 63.6
Lsat_1_v5_gn_5_121240 Lactuca sativa HOM05D000445 ORTHO05D000314 6.1e-27 124.8 74 87.8
HanXRQChr00c0392g0574461 Helianthus annuus HOM05D000445 ORTHO05D000314 1.8e-26 123.2 71 90.1
HanXRQChr00c0585g0576231 Helianthus annuus HOM05D000445 ORTHO05D000314 1.8e-26 123.2 71 90.1
HanXRQChr05g0152501 Helianthus annuus HOM05D000445 ORTHO05D000314 1.8e-26 123.2 71 90.1
HanXRQChr10g0317961 Helianthus annuus HOM05D000445 ORTHO05D000314 1.8e-26 123.2 71 90.1
Solyc03g080130.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.6e-25 119.4 69 84.1
HanXRQChr00c0496g0575211 Helianthus annuus HOM05D000445 ORTHO05D000314 7.5e-25 117.9 55 100.0
Solyc09g031840.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 7.5e-25 117.9 63 90.5
C09p24780 Brassica napus HOM05D000445 ORTHO05D000314 2.8e-24 115.9 77 81.8
BolSC44t60838H Brassica oleracea HOM05D000445 ORTHO05D000314 2.8e-24 115.9 77 81.8
Nitab4.5_0001761g0210 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.1e-23 114.0 136 54.4
Dinv39830 Davidia involucrata HOM05D000445 ORTHO05D000314 2.4e-23 112.8 76 78.9
EL10Ac2g04287 Beta vulgaris HOM05D000445 ORTHO05D000314 5.3e-23 111.7 85 74.1
Gohir.D10G110850 Gossypium hirsutum HOM05D000445 ORTHO05D000314 2.0e-22 109.8 74 75.7
Gorai.002G166000 Gossypium raimondii HOM05D000445 ORTHO05D000314 1.7e-21 106.7 98 62.2
Ah.10g029020 Amaranthus hybridus HOM05D000445 ORTHO05D000314 3.8e-21 105.5 82 72.0
Nitab4.5_0018503g0010 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.1e-20 104.0 65 81.5
Sc02g0005240 Simmondsia chinensis HOM05D000445 ORTHO05D000314 1.1e-20 104.0 84 69.0
Nitab4.5_0003101g0090 Nicotiana tabacum HOM05D000445 ORTHO05D000314 3.2e-20 102.4 93 67.7
Solyc04g050840.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 3.2e-20 102.4 65 83.1
Nitab4.5_0004376g0100 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.2e-19 100.5 118 56.8
Solyc04g024540.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.0e-18 97.4 65 81.5
arahy.Tifrunner.gnm1.ann1.9A3TMW Arachis hypogaea HOM05D000445 ORTHO05D000314 4.0e-18 95.5 60 81.7
BolSC45t60924H Brassica oleracea HOM05D000445 ORTHO05D000314 4.0e-18 95.5 66 80.3
Hund08796 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.2e-17 94.0 97 62.9
Hund10280 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.2e-17 94.0 97 62.9
Hund26852 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.2e-17 94.0 97 62.9
Hund28591 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.2e-17 94.0 97 62.9
Hund28646 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.2e-17 94.0 97 62.9
Hund28772 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.2e-17 94.0 97 62.9
Hund29402 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.2e-17 94.0 97 62.9
Hund29423 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.2e-17 94.0 97 62.9
BolSC46t60973H Brassica oleracea HOM05D000445 ORTHO05D000314 2.6e-17 92.8 65 80.0
VMungo0942G0001 Vigna mungo HOM05D000445 ORTHO05D000314 2.6e-17 92.8 73 71.2
VMungo0976G0001 Vigna mungo HOM05D000445 ORTHO05D000314 2.6e-17 92.8 73 71.2
Solyc02g014800.2 Solanum lycopersicum HOM05D000445 ORTHO05D000314 4.4e-17 92.0 59 78.0
Hund29199 Selenicereus undatus HOM05D000445 ORTHO05D000314 5.7e-17 91.7 111 56.8
Sc15g0001780 Simmondsia chinensis HOM05D001387 ORTHO05D001250 5.7e-17 91.7 81 66.7
Hund30102 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.7e-16 90.1 105 56.2
Hund19326 Selenicereus undatus HOM05D000445 ORTHO05D000314 3.7e-16 89.0 110 55.5
Nitab4.5_0014666g0070 Nicotiana tabacum HOM05D000445 ORTHO05D000314 4.8e-16 88.6 50 88.0
Nitab4.5_0001379g0050 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.1e-15 87.4 92 52.2
Sed0022464 Sechium edule HOM05D000445 ORTHO05D000314 2.4e-15 86.3 61 78.7
Hund28275 Selenicereus undatus HOM05D000445 ORTHO05D000314 3.1e-15 85.9 70 71.4
Sed0005242 Sechium edule HOM05D000445 ORTHO05D000314 3.5e-14 82.4 55 83.6
Gorai.011G122200 Gossypium raimondii HOM05D000445 ORTHO05D000314 7.7e-14 81.3 57 78.9
arahy.Tifrunner.gnm1.ann1.6U43FV Arachis hypogaea HOM05D005015 ORTHO05D005696 1.3e-13 80.5 55 78.2
Peaxi162Scf00211g00218 Petunia axillaris HOM05D000445 ORTHO05D000314 1.3e-13 80.5 109 51.4
Migut.D01373 Erythranthe guttata HOM05D000445 ORTHO05D000314 3.2e-12 75.9 112 51.8
arahy.Tifrunner.gnm1.ann1.DY3820 Arachis hypogaea HOM05D000445 ORTHO05D010986 5.5e-12 75.1 52 78.8
Medtr8g024820 Medicago truncatula HOM05D000445 ORTHO05D000314 9.5e-12 74.3 121 50.4
SGA_v2.0_scaffold907G53716 Striga asiatica HOM05D000445 ORTHO05D000314 1.6e-11 73.6 69 60.9
unitig_91.g26489 Utricularia gibba HOM05D000445 ORTHO05D000314 3.6e-11 72.4 55 76.4
Nitab4.5_0002616g0090 Nicotiana tabacum HOM05D000445 ORTHO05D000314 6.8e-10 68.2 71 59.2
Lsat_1_v5_gn_0_15580 Lactuca sativa HOM05D000445 ORTHO05D000314 1.5e-09 67.0 35 100.0
Lsat_1_v5_gn_5_27740 Lactuca sativa HOM05D000445 ORTHO05D000314 1.5e-09 67.0 35 100.0
Hund29327 Selenicereus undatus HOM05D000445 ORTHO05D000314 2.0e-09 66.6 54 74.1
Psat0s2065g0040 Pisum sativum HOM05D000445 ORTHO05D000314 9.8e-09 64.3 103 46.6
Oeu012817.1 Olea europaea HOM05D000445 ORTHO05D000314 2.2e-08 63.2 34 88.2
Migut.D01405 Erythranthe guttata HOM05D000445 ORTHO05D000314 1.4e-07 60.5 129 40.3
Gohir.D02G149651 Gossypium hirsutum HOM05D000445 ORTHO05D000314 3.1e-07 59.3 43 76.7
Medtr5g010700 Medicago truncatula HOM05D000445 ORTHO05D000314 3.1e-07 59.3 60 60.0
unitig_0.g2040 Utricularia gibba HOM05D003517 ORTHO05D009794 4.1e-07 58.9 38 86.8
unitig_87.g27922 Utricularia gibba HOM05D000445 ORTHO05D000314 4.1e-07 58.9 38 86.8
unitig_91.g26516 Utricularia gibba HOM05D000445 ORTHO05D000314 4.1e-07 58.9 38 86.8
Atru.chr9.779 Acer truncatum HOM05D000445 ORTHO05D000725 7.0e-07 58.2 38 86.8
Cfa015164 Carpinus fangiana HOM05D000445 ORTHO05D000314 7.0e-07 58.2 38 86.8
Lj2C1224G47 Lonicera japonica HOM05D000445 ORTHO05D000314 7.0e-07 58.2 38 86.8
Gorai.005G167600 Gossypium raimondii HOM05D000445 ORTHO05D000314 9.2e-07 57.8 43 74.4
Medtr4g047930 Medicago truncatula HOM05D000445 ORTHO05D000314 9.2e-07 57.8 81 45.7
QL01p047310 Quercus lobata HOM05D000445 ORTHO05D000314 9.2e-07 57.8 38 86.8
COL.COLO4_03129 Corchorus olitorius HOM05D000445 ORTHO05D000314 1.6e-06 57.0 39 82.1
HPP92_027118 Vanilla planifolia HOM05D000445 ORTHO05D000314 1.6e-06 57.0 49 67.3
CAN.G1298.14 Capsicum annuum HOM05D000445 ORTHO05D000314 2.0e-06 56.6 38 84.2
CAN.G1298.22 Capsicum annuum HOM05D000445 ORTHO05D000314 2.0e-06 56.6 38 84.2
CAN.G1738.16 Capsicum annuum HOM05D000445 ORTHO05D000314 2.0e-06 56.6 38 84.2
Medtr0689s0010 Medicago truncatula HOM05D000445 ORTHO05D000314 2.0e-06 56.6 38 84.2
Oeu062872.1 Olea europaea HOM05D000445 ORTHO05D000314 2.0e-06 56.6 29 86.2
Solyc00g500147.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.0e-06 56.6 38 84.2
Sopen02g009120 Solanum pennellii HOM05D000445 ORTHO05D000314 2.0e-06 56.6 38 84.2
Sopen10g008920 Solanum pennellii HOM05D000445 ORTHO05D000314 2.0e-06 56.6 38 84.2
PGSC0003DMG400020534 Solanum tuberosum HOM05D000445 ORTHO05D000314 2.0e-06 56.6 38 84.2
EL10As9g23920 Beta vulgaris HOM05D000445 ORTHO05D000314 2.7e-06 56.2 55 65.5
Medtr4g051435 Medicago truncatula HOM05D000445 ORTHO05D000314 2.7e-06 56.2 108 42.6
Dinv09726 Davidia involucrata HOM05D000445 ORTHO05D000314 3.5e-06 55.8 38 84.2
Dinv29308 Davidia involucrata HOM05D000445 ORTHO05D000314 3.5e-06 55.8 38 84.2
HanXRQChr00c0448g0574801 Helianthus annuus HOM05D000445 ORTHO05D000314 3.5e-06 55.8 60 53.3
SalBow1G2382 Salvia bowleyana HOM05D000445 ORTHO05D000314 3.5e-06 55.8 38 84.2
Sed0006678 Sechium edule HOM05D000445 ORTHO05D000314 3.5e-06 55.8 38 84.2


User provided reference genes

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