Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr00c0572g0575971 Helianthus annuus HOM05D000445 ORTHO05D000314 7.6e-52 206.8 101 100.0
HanXRQChr00c0165g0572211 Helianthus annuus HOM05D000445 ORTHO05D000314 2.6e-28 128.6 99 70.7
HanXRQChr00c0349g0573981 Helianthus annuus HOM05D000445 ORTHO05D000314 2.6e-28 128.6 99 70.7
HanXRQChr00c0394g0574511 Helianthus annuus HOM05D000445 ORTHO05D000314 2.6e-28 128.6 99 70.7
HanXRQChr00c0451g0574821 Helianthus annuus HOM05D000445 ORTHO05D000314 2.6e-28 128.6 99 70.7
HanXRQChr00c0524g0575411 Helianthus annuus HOM05D000445 ORTHO05D000314 2.6e-28 128.6 99 70.7
HanXRQChr01g0020161 Helianthus annuus HOM05D000445 ORTHO05D000314 2.6e-28 128.6 99 70.7
HanXRQChr04g0127431 Helianthus annuus HOM05D000445 ORTHO05D000314 2.6e-28 128.6 99 70.7
HanXRQChr05g0152501 Helianthus annuus HOM05D000445 ORTHO05D000314 2.6e-28 128.6 99 70.7
HanXRQChr11g0321171 Helianthus annuus HOM05D000445 ORTHO05D000314 2.6e-28 128.6 99 70.7
HanXRQChr11g0327091 Helianthus annuus HOM05D000445 ORTHO05D000314 2.6e-28 128.6 99 70.7
HanXRQChr12g0369911 Helianthus annuus HOM05D000445 ORTHO05D000314 2.6e-28 128.6 99 70.7
HanXRQChr13g0416601 Helianthus annuus HOM05D000445 ORTHO05D000314 2.6e-28 128.6 99 70.7
HanXRQCPg0580251 Helianthus annuus HOM05D000445 ORTHO05D000314 2.6e-28 128.6 99 70.7
HanXRQCPg0580471 Helianthus annuus HOM05D000445 ORTHO05D000314 2.6e-28 128.6 99 70.7
HanXRQChr11g0336111 Helianthus annuus HOM05D000445 ORTHO05D000314 7.7e-28 127.1 99 69.7
HanXRQChr11g0336131 Helianthus annuus HOM05D000445 ORTHO05D000314 7.7e-28 127.1 99 69.7
Lsat_1_v5_gn_3_13441 Lactuca sativa HOM05D000445 ORTHO05D000314 4.6e-25 117.9 103 65.0
Lsat_1_v5_gn_8_26500 Lactuca sativa HOM05D000445 ORTHO05D000314 4.6e-25 117.9 103 65.0
Lsat_1_v5_gn_9_85820 Lactuca sativa HOM05D000445 ORTHO05D000314 4.6e-25 117.9 103 65.0
CsaV3_UNG209000 Cucumis sativus L. HOM05D000445 ORTHO05D000314 4.1e-21 104.8 99 62.6
C06p21350 Brassica napus HOM05D000445 ORTHO05D000314 5.3e-21 104.4 99 62.6
Sc05g0004090 Simmondsia chinensis HOM05D000445 ORTHO05D000314 5.3e-21 104.4 99 62.6
BcaB02g11358 Brassica carinata HOM05D000445 ORTHO05D000314 6.9e-21 104.0 99 62.6
Hma1.2p1_0192F.1_g083690 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 6.9e-21 104.0 99 62.6
TAR383G0379 Trochodendron aralioides HOM05D000445 ORTHO05D000314 6.9e-21 104.0 99 62.6
PGR111G0085 Punica granatum HOM05D000445 ORTHO05D000314 9.1e-21 103.6 99 61.6
PGR111G0100 Punica granatum HOM05D000445 ORTHO05D000314 9.1e-21 103.6 99 61.6
Nn269s46007 Nelumbo nucifera HOM05D000445 ORTHO05D000314 1.2e-20 103.2 99 62.6
Nn3g16153 Nelumbo nucifera HOM05D000445 ORTHO05D000314 1.2e-20 103.2 99 62.6
Potri.013G143400 Populus trichocarpa HOM05D000445 ORTHO05D000314 1.2e-20 103.2 99 62.6
RcHm_v2.0_CPg0501801 Rosa chinensis HOM05D000445 ORTHO05D000314 2.0e-20 102.4 99 61.6
RcHm_v2.0_CPg0502611 Rosa chinensis HOM05D000445 ORTHO05D000314 2.0e-20 102.4 99 61.6
BolSC29t60535H Brassica oleracea HOM05D000445 ORTHO05D000314 2.6e-20 102.1 99 61.6
BolSC29t60563H Brassica oleracea HOM05D000445 ORTHO05D000314 2.6e-20 102.1 99 61.6
BolSC29t60617H Brassica oleracea HOM05D000445 ORTHO05D000314 2.6e-20 102.1 99 61.6
BolSC47t61073H Brassica oleracea HOM05D000445 ORTHO05D000314 2.6e-20 102.1 99 61.6
Sed0009579 Sechium edule HOM05D000445 ORTHO05D000314 3.4e-20 101.7 99 61.6
Lj2C1238G15 Lonicera japonica HOM05D000445 ORTHO05D000314 5.9e-20 100.9 99 61.6
Lj2C1239G59 Lonicera japonica HOM05D000445 ORTHO05D000314 5.9e-20 100.9 99 61.6
Lju5009C0G1 Lonicera japonica HOM05D000445 ORTHO05D000314 5.9e-20 100.9 99 61.6
RcHm_v2.0_Chr2g0118451 Rosa chinensis HOM05D000445 ORTHO05D000314 5.9e-20 100.9 99 60.6
ATR0258G003 Amborella trichopoda HOM05D000445 ORTHO05D000314 7.7e-20 100.5 99 60.6
BraSC103t45415Z Brassica rapa HOM05D000445 ORTHO05D000314 1.3e-19 99.8 99 60.6
BraSC103t45439Z Brassica rapa HOM05D000445 ORTHO05D000314 1.3e-19 99.8 99 60.6
BraSC143t45672Z Brassica rapa HOM05D000445 ORTHO05D000314 1.3e-19 99.8 99 60.6
VMungo0942G0001 Vigna mungo HOM05D000445 ORTHO05D000314 1.3e-19 99.8 99 60.6
VMungo0976G0001 Vigna mungo HOM05D000445 ORTHO05D000314 1.3e-19 99.8 99 60.6
arahy.Tifrunner.gnm1.ann1.QI67VD Arachis hypogaea HOM05D000445 ORTHO05D000314 1.7e-19 99.4 99 59.6
arahy.Tifrunner.gnm1.ann1.U896IL Arachis hypogaea HOM05D000445 ORTHO05D000314 1.7e-19 99.4 99 59.6
FvH4_c3g00160 Fragaria vesca HOM05D000445 ORTHO05D000314 1.7e-19 99.4 101 59.4
SabraPtG0004600 Salix brachista HOM05D000445 ORTHO05D000314 1.7e-19 99.4 99 60.6
SabraPtG0006900 Salix brachista HOM05D000445 ORTHO05D000314 1.7e-19 99.4 99 60.6
AL1G45010 Arabidopsis lyrata HOM05D000445 ORTHO05D000314 2.2e-19 99.0 98 61.2
AL2G20470 Arabidopsis lyrata HOM05D000445 ORTHO05D000314 2.2e-19 99.0 98 61.2
arahy.Tifrunner.gnm1.ann1.Z1U5RE Arachis hypogaea HOM05D000445 ORTHO05D000314 2.2e-19 99.0 99 59.6
Gohir.A04G039060 Gossypium hirsutum HOM05D000445 ORTHO05D000314 2.2e-19 99.0 99 60.6
PSO548G0004 Papaver somniferum HOM05D000445 ORTHO05D000314 6.5e-19 97.4 99 59.6
PSO548G0115 Papaver somniferum HOM05D000445 ORTHO05D000314 6.5e-19 97.4 99 59.6
SalBow1G2507 Salvia bowleyana HOM05D000445 ORTHO05D000314 1.4e-18 96.3 99 61.6
CAN.G210.9 Capsicum annuum HOM05D000445 ORTHO05D000314 2.5e-18 95.5 99 61.6
Nitab4.5_0005100g0090 Nicotiana tabacum HOM05D000445 ORTHO05D000314 2.5e-18 95.5 99 61.6
Peaxi162Scf00147g00312 Petunia axillaris HOM05D000445 ORTHO05D010350 2.5e-18 95.5 99 61.6
Solyc00g500037.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.5e-18 95.5 99 61.6
Solyc00g500046.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.5e-18 95.5 99 61.6
Solyc00g500081.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.5e-18 95.5 99 61.6
Solyc00g500128.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.5e-18 95.5 99 61.6
Solyc00g500198.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.5e-18 95.5 99 61.6
Solyc00g500327.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.5e-18 95.5 99 61.6
PGSC0003DMG400015060 Solanum tuberosum HOM05D000445 ORTHO05D000314 2.5e-18 95.5 99 61.6
CAN.G1648.15 Capsicum annuum HOM05D000445 ORTHO05D000314 3.2e-18 95.1 99 60.6
Lalb_Chr01g0014991 Lupinus albus HOM05D000445 ORTHO05D000314 3.2e-18 95.1 99 58.6
ATCG00860 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 4.2e-18 94.7 98 59.2
ATCG01280 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 4.2e-18 94.7 98 59.2
CARHR282560 Cardamine hirsuta HOM05D000445 ORTHO05D000314 4.2e-18 94.7 98 59.2
LjContig00318g0009654 Lotus japonicus HOM05D000445 ORTHO05D000314 4.2e-18 94.7 99 58.6
LjContig00318g0022366 Lotus japonicus HOM05D000445 ORTHO05D000314 4.2e-18 94.7 99 58.6
LjContig00319g0026737 Lotus japonicus HOM05D000445 ORTHO05D000314 4.2e-18 94.7 99 58.6
CAN.G1738.15 Capsicum annuum HOM05D000445 ORTHO05D000314 3.6e-17 91.7 99 59.6
HanXRQChr00c0392g0574461 Helianthus annuus HOM05D000445 ORTHO05D000314 6.1e-17 90.9 98 52.0
Ah.10g027230 Amaranthus hybridus HOM05D000445 ORTHO05D000314 1.4e-16 89.7 72 68.1
Ah.10g027290 Amaranthus hybridus HOM05D000445 ORTHO05D000314 1.4e-16 89.7 72 68.1
Ah.10g027420 Amaranthus hybridus HOM05D000445 ORTHO05D000314 1.4e-16 89.7 72 68.1
Ah.10g027670 Amaranthus hybridus HOM05D000445 ORTHO05D000314 1.4e-16 89.7 72 68.1
Ah.10g027730 Amaranthus hybridus HOM05D000445 ORTHO05D000314 1.4e-16 89.7 72 68.1
arahy.Tifrunner.gnm1.ann1.FTZ997 Arachis hypogaea HOM05D000445 ORTHO05D000314 1.4e-16 89.7 98 57.1
Aqoxy169s001 Aquilegia oxysepala HOM05D000445 ORTHO05D000314 2.3e-16 89.0 97 56.7
Migut.D01323 Erythranthe guttata HOM05D000445 ORTHO05D000314 2.3e-16 89.0 98 57.1
DCAR_032529 Daucus carota HOM05D000445 ORTHO05D000314 3.0e-16 88.6 96 56.2
DCAR_032547 Daucus carota HOM05D000445 ORTHO05D000314 3.0e-16 88.6 96 56.2
unitig_91.g26489 Utricularia gibba HOM05D000445 ORTHO05D000314 3.9e-16 88.2 99 57.6
unitig_91.g26515 Utricularia gibba HOM05D000445 ORTHO05D000314 3.9e-16 88.2 99 57.6
unitig_91.g26530 Utricularia gibba HOM05D000445 ORTHO05D000314 3.9e-16 88.2 99 57.6
CAN.G1298.13 Capsicum annuum HOM05D000445 ORTHO05D000314 5.1e-16 87.8 99 58.6
SGA_v2.0_scaffold2596G54158 Striga asiatica HOM05D000445 ORTHO05D000314 6.7e-16 87.4 101 58.4
Solyc03g078010.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 8.8e-16 87.0 99 57.6
CAN.G8.28 Capsicum annuum HOM05D000445 ORTHO05D000314 1.1e-15 86.7 97 57.7
Hund01216 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.1e-15 86.7 70 68.6
Hund08796 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.1e-15 86.7 70 68.6
Hund10280 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.1e-15 86.7 70 68.6
Hund11510 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.1e-15 86.7 70 68.6
Hund19325 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.1e-15 86.7 70 68.6
Hund26851 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.1e-15 86.7 70 68.6
Hund26897 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.1e-15 86.7 70 68.6
Hund27472 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.1e-15 86.7 70 68.6
Hund27473 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.1e-15 86.7 70 68.6
Hund28591 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.1e-15 86.7 70 68.6
Hund28646 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.1e-15 86.7 70 68.6
Hund28772 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.1e-15 86.7 70 68.6
Hund29423 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.1e-15 86.7 70 68.6
Hund29661 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.1e-15 86.7 70 68.6
Hund29851 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.1e-15 86.7 70 68.6
EL10As18g24166 Beta vulgaris HOM05D000445 ORTHO05D000314 1.5e-15 86.3 70 68.6
Lj2C1238G34 Lonicera japonica HOM05D000445 ORTHO05D000314 2.0e-15 85.9 70 67.1
LjContig00489g0008652 Lotus japonicus HOM05D000445 ORTHO05D000314 2.6e-15 85.5 99 57.6
HanXRQChr00c0368g0574211 Helianthus annuus HOM05D000445 ORTHO05D000314 3.7e-14 81.6 64 65.6
Gohir.A12G088950 Gossypium hirsutum HOM05D000445 ORTHO05D000314 4.8e-14 81.3 75 61.3
Lj4g0020232 Lotus japonicus HOM05D000445 ORTHO05D000314 6.3e-14 80.9 98 53.1
Migut.D01405 Erythranthe guttata HOM05D000445 ORTHO05D000314 1.1e-13 80.1 73 64.4
CAN.G1063.2 Capsicum annuum HOM05D000445 ORTHO05D000314 2.4e-13 79.0 70 65.7
HanXRQChr10g0317981 Helianthus annuus HOM05D000445 ORTHO05D000314 2.4e-13 79.0 86 50.0
Peaxi162Scf00211g00218 Petunia axillaris HOM05D000445 ORTHO05D000314 9.1e-13 77.0 128 46.9
Gorai.009G118200 Gossypium raimondii HOM05D000445 ORTHO05D000314 1.2e-12 76.6 92 53.3
Gohir.A03G089101 Gossypium hirsutum HOM05D000445 ORTHO05D000314 1.6e-12 76.3 92 52.2
Gorai.004G232100 Gossypium raimondii HOM05D000445 ORTHO05D000314 1.0e-11 73.6 70 58.6
Nitab4.5_0014666g0050 Nicotiana tabacum HOM05D000445 ORTHO05D000314 3.8e-11 71.6 70 61.4
Nitab4.5_0007104g0070 Nicotiana tabacum HOM05D000445 ORTHO05D000314 8.5e-11 70.5 98 51.0
BolSC44t60839H Brassica oleracea HOM05D000445 ORTHO05D000314 3.2e-10 68.6 79 50.6
Medtr4g047930 Medicago truncatula HOM05D000445 ORTHO05D000314 9.4e-10 67.0 65 56.9
Nitab4.5_0001761g0320 Nicotiana tabacum HOM05D000445 ORTHO05D000314 3.6e-09 65.1 98 49.0
Medtr4g051435 Medicago truncatula HOM05D000445 ORTHO05D000314 4.7e-09 64.7 65 55.4
Nn1g10066 Nelumbo nucifera HOM05D000445 ORTHO05D000314 4.7e-09 64.7 60 61.7
Nn1g10127 Nelumbo nucifera HOM05D000445 ORTHO05D000314 4.7e-09 64.7 60 61.7
Cpa.g.sc30.80 Carica papaya HOM05D000445 ORTHO05D000314 1.0e-08 63.5 85 44.7
Nitab4.5_0000011g0360 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.8e-08 62.8 98 48.0
Nitab4.5_0020349g0020 Nicotiana tabacum HOM05D000445 ORTHO05D000314 5.2e-08 61.2 105 46.7
BolSC49t61127H Brassica oleracea HOM05D000445 ORTHO05D000314 3.3e-07 58.5 72 48.6
Hund29402 Selenicereus undatus HOM05D000445 ORTHO05D000314 3.3e-07 58.5 56 58.9
HanXRQChr00c0454g0574911 Helianthus annuus HOM05D000445 ORTHO05D000314 5.7e-07 57.8 97 44.3
COL.COLO4_02147 Corchorus olitorius HOM05D000445 ORTHO05D000314 7.5e-07 57.4 36 83.3
Nitab4.5_0003101g0070 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.7e-06 56.2 56 62.5
Nitab4.5_0023562g0010 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.7e-06 56.2 98 45.9


User provided reference genes

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