Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr00c0572g0575931 Helianthus annuus HOM05D004473 ORTHO05D005652 2.3e-165 585.5 295 100.0
HanXRQChr00c0125g0571751 Helianthus annuus HOM05D004473 ORTHO05D005652 2.8e-147 525.4 338 82.2
HanXRQChr00c0368g0574161 Helianthus annuus HOM05D004473 ORTHO05D005652 8.2e-147 523.9 337 82.5
HanXRQCPg0579741 Helianthus annuus HOM05D004473 ORTHO05D005652 8.2e-147 523.9 337 82.5
Lsat_1_v5_gn_7_76981 Lactuca sativa HOM05D004473 ORTHO05D005652 3.6e-126 455.3 337 73.3
HanXRQChr11g0326581 Helianthus annuus HOM05D004473 ORTHO05D005652 2.7e-121 439.1 329 73.3
Lj2P1239T154 Lonicera japonica HOM05D004473 ORTHO05D005652 2.7e-113 412.5 329 66.3
Hma1.2p1_4210F.1_g338470 Hydrangea macrophylla HOM05D004473 ORTHO05D005652 3.8e-112 408.7 335 66.0
DCAR_032465 Daucus carota HOM05D004473 ORTHO05D005652 2.9e-107 392.5 334 63.2
Sopen01g008040 Solanum pennellii HOM05D004473 ORTHO05D005652 7.3e-103 377.9 332 62.0
EL10As2g23210 Beta vulgaris HOM05D004473 ORTHO05D005652 1.6e-102 376.7 335 60.6
CAN.G939.10 Capsicum annuum HOM05D004473 ORTHO05D005652 8.3e-99 364.4 331 61.9
Hund27810 Selenicereus undatus HOM05D004473 ORTHO05D005652 7.0e-98 361.3 339 59.9
Hund29400 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.5e-95 353.6 325 61.2
Hund30056 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.5e-95 353.6 325 61.2
Hund29659 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.3e-95 352.4 337 58.8
Hund25918 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.2e-94 350.5 331 59.8
Gohir.A04G039120 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.6e-94 350.1 335 57.9
PGR111G0117 Punica granatum HOM05D004473 ORTHO05D005652 1.6e-94 350.1 336 58.3
Gohir.A04G039150 Gossypium hirsutum HOM05D004473 ORTHO05D005652 4.7e-94 348.6 321 59.2
RcHm_v2.0_CPg0502521 Rosa chinensis HOM05D004473 ORTHO05D005652 4.7e-94 348.6 334 58.4
Eucgr.D01147 Eucalyptus grandis HOM05D004473 ORTHO05D005652 6.8e-93 344.7 324 59.0
Lsat_1_v5_gn_2_89740 Lactuca sativa HOM05D004473 ORTHO05D005652 1.5e-92 343.6 308 64.3
Sed0017792 Sechium edule HOM05D004473 ORTHO05D005652 1.5e-92 343.6 327 58.4
Atru.chr6.757 Acer truncatum HOM05D004473 ORTHO05D005652 2.6e-92 342.8 335 56.1
Sed0024057 Sechium edule HOM05D004473 ORTHO05D005652 4.4e-92 342.0 322 58.7
ScUNg0001290 Simmondsia chinensis HOM05D004473 ORTHO05D005652 4.1e-90 335.5 335 56.4
Hund30352 Selenicereus undatus HOM05D004473 ORTHO05D005652 8.6e-88 327.8 337 56.4
Hund10282 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.5e-87 326.2 314 58.9
SalBow1G8010 Salvia bowleyana HOM05D004473 ORTHO05D005652 3.6e-86 322.4 339 54.6
TWI34G1450 Tripterygium wilfordii HOM05D004473 ORTHO05D005652 3.6e-86 322.4 335 55.8
BraSC25t45889Z Brassica rapa HOM05D004473 ORTHO05D005652 4.7e-86 322.0 338 53.3
PSO548G0076 Papaver somniferum HOM05D004473 ORTHO05D005652 4.0e-85 318.9 335 55.5
C06p21390 Brassica napus HOM05D004473 ORTHO05D005652 6.8e-85 318.2 330 53.6
BraSC143t45676Z Brassica rapa HOM05D004473 ORTHO05D005652 8.9e-85 317.8 330 53.6
Medtr3g035685 Medicago truncatula HOM05D004473 ORTHO05D005652 1.5e-84 317.0 336 53.3
BcaC05g28805 Brassica carinata HOM05D004473 ORTHO05D005652 2.0e-84 316.6 330 53.6
ATCG00040 Arabidopsis thaliana HOM05D004473 ORTHO05D005652 7.6e-84 314.7 330 53.3
Hund29926 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.2e-81 307.4 337 54.0
Solyc00g500048.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 1.6e-81 307.0 307 57.3
Solyc00g500131.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 1.6e-81 307.0 307 57.3
Solyc00g500201.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 1.6e-81 307.0 307 57.3
Solyc00g500295.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 1.6e-81 307.0 307 57.3
Solyc00g500330.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 1.6e-81 307.0 307 57.3
Hund29000 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.7e-80 303.5 337 53.7
LjContig00318g0021272 Lotus japonicus HOM05D004473 ORTHO05D005652 2.3e-80 303.1 307 55.4
Lj2P1238T61 Lonicera japonica HOM05D004473 ORTHO05D005652 6.6e-80 301.6 255 62.7
Hund28272 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.5e-79 299.7 317 55.5
Potri.013G138201 Populus trichocarpa HOM05D004473 ORTHO05D005652 3.1e-77 292.7 339 50.7
Medtr4g051280 Medicago truncatula HOM05D004473 ORTHO05D005652 9.0e-77 291.2 312 52.6
Medtr0002s0390 Medicago truncatula HOM05D004473 ORTHO05D005652 8.4e-75 284.6 329 49.5
Medtr7g021760 Medicago truncatula HOM05D004473 ORTHO05D005652 8.4e-75 284.6 319 52.4
CAN.G386.22 Capsicum annuum HOM05D004473 ORTHO05D005652 1.4e-74 283.9 240 66.2
LjContig00489g0020099 Lotus japonicus HOM05D004473 ORTHO05D005652 1.4e-74 283.9 344 50.6
Hund29405 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.0e-72 277.7 277 58.5
Lalb_Chr07g0191541 Lupinus albus HOM05D004473 ORTHO05D005652 1.7e-72 276.9 321 50.8
Peaxi162Scf00219g00048 Petunia axillaris HOM05D004473 ORTHO05D001250 9.6e-71 271.2 288 56.6
BraSC151t45687Z Brassica rapa HOM05D004473 ORTHO05D005652 4.8e-70 268.9 289 52.6
Gohir.A08G095662 Gossypium hirsutum HOM05D004473 ORTHO05D005652 7.6e-68 261.5 276 52.9
HanXRQChr00c0524g0575451 Helianthus annuus HOM05D004473 ORTHO05D005652 9.9e-68 261.2 217 68.7
arahy.Tifrunner.gnm1.ann1.40BINF Arachis hypogaea HOM05D004473 ORTHO05D005652 9.3e-66 254.6 291 49.1
Eucgr.D00924 Eucalyptus grandis HOM05D004473 ORTHO05D005652 9.6e-63 244.6 289 50.2
Gohir.1Z050066 Gossypium hirsutum HOM05D004473 ORTHO05D005652 4.0e-61 239.2 296 50.0
GSVIVG01022885001 Vitis vinifera HOM05D004473 ORTHO05D005652 5.8e-60 235.3 308 47.7
SGA_v2.0_scaffold479G52250 Striga asiatica HOM05D004473 ORTHO05D005652 1.7e-59 233.8 278 51.1
Gohir.1Z049403 Gossypium hirsutum HOM05D004473 ORTHO05D005652 7.1e-58 228.4 278 48.9
Peaxi162Scf00211g00244 Petunia axillaris HOM05D004473 ORTHO05D005652 2.1e-54 216.9 200 64.0
Nn4g24630 Nelumbo nucifera HOM05D004473 ORTHO05D005652 1.4e-53 214.2 182 63.2
BcaB03g16404 Brassica carinata HOM05D004473 ORTHO05D005652 1.5e-47 194.1 183 59.0
Nn2g10392 Nelumbo nucifera HOM05D004473 ORTHO05D005652 1.6e-46 190.7 251 48.2
Gorai.002G165800 Gossypium raimondii HOM05D001387 ORTHO05D001250 6.3e-46 188.7 294 41.8
HanXRQChr00c0165g0572181 Helianthus annuus HOM05D004473 ORTHO05D005652 6.5e-43 178.7 88 98.9
arahy.Tifrunner.gnm1.ann1.3DS1LI Arachis hypogaea HOM05D004473 ORTHO05D005652 1.1e-42 177.9 174 53.4
arahy.Tifrunner.gnm1.ann1.SGP77C Arachis hypogaea HOM05D004473 ORTHO05D005652 1.1e-42 177.9 174 53.4
Hund11181 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.3e-40 170.2 204 49.5
PGSC0003DMG400041047 Solanum tuberosum HOM05D004473 ORTHO05D005652 3.9e-40 169.5 150 57.3
Migut.D01408 Erythranthe guttata HOM05D004473 ORTHO05D005652 3.6e-33 146.4 197 44.7
Nitab4.5_0007979g0030 Nicotiana tabacum HOM05D001387 ORTHO05D001250 3.9e-32 142.9 191 47.1
Gorai.001G044100 Gossypium raimondii HOM05D004473 ORTHO05D005652 6.3e-30 135.6 127 59.8
Solyc09g061390.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 7.0e-29 132.1 87 77.0
HanXRQChr00c0126g0571831 Helianthus annuus HOM05D004473 ORTHO05D005652 9.1e-29 131.7 69 91.3
Nitab4.5_0001439g0120 Nicotiana tabacum HOM05D004473 ORTHO05D005652 2.6e-28 130.2 111 65.8
Oeu012780.1 Olea europaea HOM05D001387 ORTHO05D001250 1.0e-27 128.3 90 76.7
HanXRQChr00c0496g0575171 Helianthus annuus HOM05D004473 ORTHO05D005652 1.3e-27 127.9 70 85.7
Gohir.A08G070362 Gossypium hirsutum HOM05D004473 ORTHO05D005652 8.5e-27 125.2 124 58.1
BolC2t10578H Brassica oleracea HOM05D004473 ORTHO05D005652 6.1e-25 119.0 136 46.3
BolSC37t60777H Brassica oleracea HOM05D004473 ORTHO05D005652 6.1e-25 119.0 136 46.3
BolSC45t60885H Brassica oleracea HOM05D004473 ORTHO05D005652 6.1e-25 119.0 136 46.3
BolSC45t60929H Brassica oleracea HOM05D004473 ORTHO05D005652 6.1e-25 119.0 136 46.3
BolSC46t60978H Brassica oleracea HOM05D004473 ORTHO05D005652 6.1e-25 119.0 136 46.3
TPR.G10220 Trifolium pratense HOM05D004473 ORTHO05D005652 5.2e-24 115.9 136 47.8
Hund10683 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.4e-21 107.8 182 44.0
Peaxi162Scf00211g00223 Petunia axillaris HOM05D004473 ORTHO05D005652 2.4e-21 107.1 75 66.7
Gorai.001G230600 Gossypium raimondii HOM05D004473 ORTHO05D005652 7.0e-21 105.5 117 55.6
Nitab4.5_0011099g0050 Nicotiana tabacum HOM05D004473 ORTHO05D005652 1.2e-20 104.8 107 51.4
Thhalv10001851m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 1.6e-20 104.4 196 37.8
CAN.G130.4 Capsicum annuum HOM05D004473 ORTHO05D005652 2.0e-20 104.0 78 61.5
Gohir.A07G155811 Gossypium hirsutum HOM05D004473 ORTHO05D005652 3.5e-20 103.2 70 75.7
CAN.G575.33 Capsicum annuum HOM05D004473 ORTHO05D000001 1.3e-19 101.3 74 64.9
CAN.G85.6 Capsicum annuum HOM05D004473 ORTHO05D005652 1.3e-19 101.3 74 64.9
Psat0s1330g0240 Pisum sativum HOM05D004473 ORTHO05D005652 1.3e-19 101.3 114 52.6
CAN.G219.14 Capsicum annuum HOM05D004473 ORTHO05D005652 2.9e-19 100.1 74 64.9
Medtr7g098060 Medicago truncatula HOM05D004473 ORTHO05D005652 2.9e-19 100.1 76 65.8
CAN.G1738.12 Capsicum annuum HOM05D004473 ORTHO05D005652 8.5e-19 98.6 76 61.8
BolSC49t61206H Brassica oleracea HOM05D004473 ORTHO05D005652 5.5e-18 95.9 81 58.0
CAN.G100.39 Capsicum annuum HOM05D004473 ORTHO05D005652 7.2e-18 95.5 74 60.8
Hund10684 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.4e-16 91.3 113 45.1
GSVIVG01022429001 Vitis vinifera HOM05D004473 ORTHO05D005652 3.4e-15 86.7 90 53.3
Gorai.013G056700 Gossypium raimondii HOM05D004473 ORTHO05D005652 2.2e-14 84.0 83 57.8
Thhalv10012215m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 6.3e-14 82.4 246 28.9
Duzib147G0859 Durio zibethinus HOM05D004473 ORTHO05D005696 2.4e-13 80.5 102 41.2
TPR.G40775 Trifolium pratense HOM05D004473 ORTHO05D005652 7.0e-13 79.0 116 37.1
CAN.G156.6 Capsicum annuum HOM05D004473 ORTHO05D005652 3.5e-12 76.6 93 44.1
HanXRQChr16g0503961 Helianthus annuus HOM05D004473 ORTHO05D005652 5.9e-12 75.9 41 100.0
Gorai.003G179600 Gossypium raimondii HOM05D004473 ORTHO05D005652 7.7e-12 75.5 82 50.0
Gorai.005G171000 Gossypium raimondii HOM05D004473 ORTHO05D005652 7.7e-12 75.5 128 38.3
GSVIVG01020677001 Vitis vinifera HOM05D004473 ORTHO05D005652 7.7e-12 75.5 46 69.6
Atru.chr7.156 Acer truncatum HOM05D004473 ORTHO05D005652 1.0e-11 75.1 56 62.5
Oeu051131.1 Olea europaea HOM05D000388 ORTHO05D004227 6.5e-11 72.4 78 50.0
arahy.Tifrunner.gnm1.ann1.85ZYV6 Arachis hypogaea HOM05D004473 ORTHO05D005652 1.5e-10 71.2 148 31.1
Oeu020582.1 Olea europaea HOM05D004473 ORTHO05D005652 7.2e-10 68.9 74 48.6
Migut.D01003 Erythranthe guttata HOM05D004473 ORTHO05D005652 1.6e-09 67.8 45 71.1
MELO3C027413.2 Cucumis melo HOM05D004473 ORTHO05D005652 2.1e-09 67.4 45 64.4
Hund04106 Selenicereus undatus HOM05D004473 ORTHO05D005652 6.8e-08 62.4 68 50.0
Thhalv10028154m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 4.4e-07 59.7 43 65.1
FAN24G2630 Fragaria x ananassa HOM05D004473 ORTHO05D005652 8.3e-06 55.5 58 51.7
HanXRQChr16g0503951 Helianthus annuus HOM05D004473 ORTHO05D005652 8.3e-06 55.5 81 46.9


User provided reference genes

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