Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr00c0540g0575621 Helianthus annuus HOM05D002282 ORTHO05D002403 8.2e-77 290.4 159 100.0
HanXRQChr04g0096701 Helianthus annuus HOM05D002282 ORTHO05D002403 2.3e-50 202.6 111 99.1
HanXRQChr04g0097161 Helianthus annuus HOM05D002282 ORTHO05D002403 2.3e-50 202.6 111 99.1
HanXRQChr04g0097221 Helianthus annuus HOM05D002282 ORTHO05D002403 2.3e-50 202.6 111 99.1
Lsat_1_v5_gn_1_33521 Lactuca sativa HOM05D002282 ORTHO05D002403 1.2e-40 170.2 142 72.5
ECA247G0800 Erigeron canadensis HOM05D002282 ORTHO05D002403 2.3e-39 166.0 115 82.6
TAR383G0492 Trochodendron aralioides HOM05D002282 ORTHO05D002403 1.9e-36 156.4 149 66.4
CSS0048718 Camellia sinensis var. sinensis HOM05D002282 ORTHO05D002403 4.1e-36 155.2 153 61.4
QL06p023750 Quercus lobata HOM05D002282 ORTHO05D002403 1.2e-35 153.7 140 62.9
Gohir.A05G124900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 4.6e-35 151.8 139 63.3
Sopen03g035310 Solanum pennellii HOM05D002282 ORTHO05D002403 1.7e-34 149.8 142 62.0
Peaxi162Scf00274g00850 Petunia axillaris HOM05D002282 ORTHO05D002403 2.3e-34 149.4 137 61.3
Solyc03g116380.4 Solanum lycopersicum HOM05D002282 ORTHO05D002403 3.0e-34 149.1 142 62.0
CiPaw.01G244200 Carya illinoinensis HOM05D002282 ORTHO05D002403 3.9e-34 148.7 128 66.4
PGR031G0824 Punica granatum HOM05D002282 ORTHO05D002403 3.9e-34 148.7 135 61.5
Hund00550 Selenicereus undatus HOM05D002282 ORTHO05D002403 3.9e-34 148.7 137 59.1
Potri.003G060900 Populus trichocarpa HOM05D002282 ORTHO05D002403 5.1e-34 148.3 148 57.4
Duzib235G0185 Durio zibethinus HOM05D002282 ORTHO05D002403 6.6e-34 147.9 128 67.2
Nitab4.5_0002257g0110 Nicotiana tabacum HOM05D002282 ORTHO05D002403 6.6e-34 147.9 147 61.2
Actinidia15798 Actinidia chinensis HOM05D002282 ORTHO05D002403 1.1e-33 147.1 137 62.0
Dinv30569 Davidia involucrata HOM05D002282 ORTHO05D002403 1.9e-33 146.4 151 60.9
Nn2g11949 Nelumbo nucifera HOM05D002282 ORTHO05D002403 1.9e-33 146.4 141 62.4
Cc04_g04050 Coffea canephora HOM05D002282 ORTHO05D002403 2.5e-33 146.0 135 61.5
TWI18G0202 Tripterygium wilfordii HOM05D002282 ORTHO05D002403 2.5e-33 146.0 134 61.2
RcHm_v2.0_Chr5g0081181 Rosa chinensis HOM05D002282 ORTHO05D002403 3.3e-33 145.6 155 59.4
CAN.G407.112 Capsicum annuum HOM05D002282 ORTHO05D002403 4.3e-33 145.2 142 61.3
Cpa.g.sc336.4 Carica papaya HOM05D002282 ORTHO05D002403 4.3e-33 145.2 135 61.5
Nitab4.5_0006574g0100 Nicotiana tabacum HOM05D002282 ORTHO05D002403 4.3e-33 145.2 142 62.0
PGSC0003DMG400000602 Solanum tuberosum HOM05D002282 ORTHO05D002403 4.3e-33 145.2 142 62.0
Thecc.06G073800 Theobroma cacao HOM05D002282 ORTHO05D002403 4.3e-33 145.2 139 65.5
COL.COLO4_23901 Corchorus olitorius HOM05D002282 ORTHO05D002403 7.3e-33 144.4 131 64.9
Sed0027048 Sechium edule HOM05D002282 ORTHO05D002403 7.3e-33 144.4 128 66.4
DCAR_025482 Daucus carota HOM05D002282 ORTHO05D002403 1.2e-32 143.7 141 60.3
Lj5A68G60 Lonicera japonica HOM05D002282 ORTHO05D002403 1.2e-32 143.7 123 65.0
Oeu045971.1 Olea europaea HOM05D002282 ORTHO05D002403 1.6e-32 143.3 142 61.3
Lalb_Chr04g0262501 Lupinus albus HOM05D002282 ORTHO05D002403 2.1e-32 142.9 134 60.4
Potri.001G173300 Populus trichocarpa HOM05D002282 ORTHO05D002403 2.1e-32 142.9 145 55.9
Gorai.009G129900 Gossypium raimondii HOM05D002282 ORTHO05D002403 3.6e-32 142.1 127 65.4
Haze_05779 Corylus avellana HOM05D002282 ORTHO05D002403 4.7e-32 141.7 129 63.6
Gohir.D05G125900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 6.2e-32 141.4 127 65.4
MBI04_g10418_MAGBIO Magnolia biondii HOM05D002282 ORTHO05D002403 6.2e-32 141.4 137 63.5
Prupe.6G012700 Prunus persica HOM05D002282 ORTHO05D002403 8.1e-32 141.0 128 65.6
MSTRG.1400 Avicennia marina HOM05D002282 ORTHO05D002403 1.1e-31 140.6 142 58.5
CiPaw.02G154700 Carya illinoinensis HOM05D002282 ORTHO05D002403 1.4e-31 140.2 129 62.0
SalBow1G0696 Salvia bowleyana HOM05D002282 ORTHO05D002403 1.8e-31 139.8 136 59.6
Atru.chr1.3116 Acer truncatum HOM05D002282 ORTHO05D002403 2.3e-31 139.4 122 65.6
RcHm_v2.0_Chr1g0331681 Rosa chinensis HOM05D002282 ORTHO05D002403 2.3e-31 139.4 121 65.3
Sabra01G0138500 Salix brachista HOM05D002282 ORTHO05D002403 3.1e-31 139.0 148 54.7
Sabra03G0035200 Salix brachista HOM05D002282 ORTHO05D002403 4.0e-31 138.7 152 57.2
COL.COLO4_12890 Corchorus olitorius HOM05D002282 ORTHO05D002403 5.2e-31 138.3 117 68.4
Phvul.010G153600 Phaseolus vulgaris HOM05D002282 ORTHO05D002403 5.2e-31 138.3 140 60.7
Sed0003011 Sechium edule HOM05D002282 ORTHO05D002403 8.9e-31 137.5 127 63.8
GSVIVG01017246001 Vitis vinifera HOM05D002282 ORTHO05D002403 8.9e-31 137.5 111 69.4
Ciclev10025131m.g Citrus clementina HOM05D002282 ORTHO05D002403 1.2e-30 137.1 124 60.5
FAN11G0586 Fragaria x ananassa HOM05D002282 ORTHO05D002403 1.5e-30 136.7 118 65.3
FAN25G3025 Fragaria x ananassa HOM05D002282 ORTHO05D002403 1.5e-30 136.7 116 67.2
TPR.G3896 Trifolium pratense HOM05D002282 ORTHO05D002403 1.5e-30 136.7 134 61.9
Eucgr.I02097 Eucalyptus grandis HOM05D002282 ORTHO05D002403 4.4e-30 135.2 122 61.5
FAN16G2654 Fragaria x ananassa HOM05D002282 ORTHO05D002403 9.9e-30 134.0 119 64.7
Actinidia01770 Actinidia chinensis HOM05D002282 ORTHO05D002403 1.3e-29 133.7 124 62.9
MD15G1387900 Malus domestica HOM05D002282 ORTHO05D002403 1.3e-29 133.7 130 64.6
SGA_v2.0_scaffold52G18905 Striga asiatica HOM05D002282 ORTHO05D002403 1.7e-29 133.3 141 53.9
Ah.01g020860 Amaranthus hybridus HOM05D000121 ORTHO05D000102 2.9e-29 132.5 134 61.2
PSO339G0191 Papaver somniferum HOM05D002282 ORTHO05D002403 3.7e-29 132.1 140 56.4
Zm00001eb294740 Zea mays HOM05D002282 ORTHO05D002403 3.7e-29 132.1 141 56.0
Migut.C01081 Erythranthe guttata HOM05D002282 ORTHO05D002403 8.4e-29 131.0 138 57.2
Lj3g0004862 Lotus japonicus HOM05D002282 ORTHO05D002403 1.4e-28 130.2 122 64.8
vmacro18959 Vaccinium macrocarpon HOM05D002282 ORTHO05D002403 1.4e-28 130.2 163 55.2
C08p17190 Brassica napus HOM05D002282 ORTHO05D002403 2.4e-28 129.4 132 58.3
BolC8t49348H Brassica oleracea HOM05D002282 ORTHO05D002403 2.4e-28 129.4 132 58.3
Sp1g13790 Schrenkiella parvula HOM05D002282 ORTHO05D002403 2.4e-28 129.4 126 58.7
PSO170G0153 Papaver somniferum HOM05D002282 ORTHO05D002403 3.2e-28 129.0 140 55.7
Rhsim08G0216500 Rhododendron simsii HOM05D002282 ORTHO05D002403 3.2e-28 129.0 149 55.0
arahy.Tifrunner.gnm1.ann1.NNZF0Z Arachis hypogaea HOM05D002282 ORTHO05D002403 5.4e-28 128.3 133 58.6
BcaB03g13061 Brassica carinata HOM05D002282 ORTHO05D002403 5.4e-28 128.3 115 60.9
PSO782G5325 Papaver somniferum HOM05D002282 ORTHO05D002403 5.4e-28 128.3 131 58.0
CANSAT56G4088 Cannabis sativa HOM05D002282 ORTHO05D002403 9.2e-28 127.5 116 59.5
A08p31580 Brassica napus HOM05D002282 ORTHO05D002403 2.1e-27 126.3 145 53.8
BraA08t35080Z Brassica rapa HOM05D002282 ORTHO05D002403 2.1e-27 126.3 145 53.8
CsaV3_7G032650 Cucumis sativus L. HOM05D002282 ORTHO05D002403 2.1e-27 126.3 119 60.5
Thhalv10008433m.g Eutrema salsugineum HOM05D002282 ORTHO05D002403 2.1e-27 126.3 120 60.0
EL10Ac9g21953 Beta vulgaris HOM05D000121 ORTHO05D000102 3.5e-27 125.6 144 52.8
Hund06582 Selenicereus undatus HOM05D002282 ORTHO05D002403 6.0e-27 124.8 119 59.7
AUR62011569 Chenopodium quinoa HOM05D002282 ORTHO05D002403 7.8e-27 124.4 99 64.6
Aa31LG3G13660 Aethionema arabicum HOM05D002282 ORTHO05D002403 1.0e-26 124.0 135 57.8
Aqoxy7G02081 Aquilegia oxysepala HOM05D002282 ORTHO05D002403 1.0e-26 124.0 133 57.1
MELO3C023398.2 Cucumis melo HOM05D002282 ORTHO05D002403 1.7e-26 123.2 90 73.3
Duzib192G0585 Durio zibethinus HOM05D002282 ORTHO05D002403 1.7e-26 123.2 89 71.9
HPP92_021532 Vanilla planifolia HOM05D002282 ORTHO05D002403 1.7e-26 123.2 111 64.0
A06p11480 Brassica napus HOM05D002282 ORTHO05D002403 2.3e-26 122.9 111 60.4
Carub.0001s1522 Capsella rubella HOM05D002282 ORTHO05D002403 2.3e-26 122.9 120 59.2
BraA06t24325Z Brassica rapa HOM05D002282 ORTHO05D002403 6.6e-26 121.3 115 58.3
Lj3g0012512 Lotus japonicus HOM05D002282 ORTHO05D002403 6.6e-26 121.3 130 55.4
C05p13600 Brassica napus HOM05D002282 ORTHO05D002403 8.6e-26 120.9 111 58.6
BolC5t30096H Brassica oleracea HOM05D002282 ORTHO05D002403 8.6e-26 120.9 111 58.6
HanXRQChr04g0097171 Helianthus annuus HOM05D004669 ORTHO05D005767 8.6e-26 120.9 65 98.5
Os01g0649000 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 1.1e-25 120.6 128 55.5
VMungo0331G0533 Vigna mungo HOM05D002282 ORTHO05D002403 1.1e-25 120.6 140 57.1
AT1G15420 Arabidopsis thaliana HOM05D002282 ORTHO05D002403 1.5e-25 120.2 111 61.3
CDE07G0270 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 1.9e-25 119.8 136 53.7
CARHR015980 Cardamine hirsuta HOM05D002282 ORTHO05D002403 2.5e-25 119.4 151 50.3
BcaB03g14539 Brassica carinata HOM05D002282 ORTHO05D002403 4.3e-25 118.6 122 54.9
BcaC07g38789 Brassica carinata HOM05D002282 ORTHO05D002403 9.6e-25 117.5 134 56.0
Medtr4g011300 Medicago truncatula HOM05D002282 ORTHO05D002403 2.8e-24 115.9 134 55.2
HPP92_021486 Vanilla planifolia HOM05D002282 ORTHO05D002403 3.6e-24 115.5 98 64.3
AL1G27540 Arabidopsis lyrata HOM05D002282 ORTHO05D002403 4.7e-24 115.2 109 59.6
QL05p027693 Quercus lobata HOM05D002282 ORTHO05D002403 4.7e-24 115.2 119 59.7
Os12g0634800 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 1.4e-23 113.6 134 53.0
C08p44950 Brassica napus HOM05D002282 ORTHO05D002403 6.8e-23 111.3 143 49.7
arahy.Tifrunner.gnm1.ann1.CV1QS0 Arachis hypogaea HOM05D002282 ORTHO05D002403 2.0e-22 109.8 135 51.9
ClCG09G002680 Citrullus lanatus HOM05D002282 ORTHO05D002403 2.6e-22 109.4 147 53.1
SHI18081 Sapria himalayana HOM05D002282 ORTHO05D002403 5.8e-22 108.2 134 47.0
Psat7g255200 Pisum sativum HOM05D002282 ORTHO05D002403 1.3e-21 107.1 128 53.9
THA.LOC104812495 Tarenaya hassleriana HOM05D002282 ORTHO05D002403 2.2e-21 106.3 148 49.3
BcaC07g41500 Brassica carinata HOM05D002282 ORTHO05D002403 5.4e-20 101.7 141 46.8
BolC8t52042H Brassica oleracea HOM05D002282 ORTHO05D002403 9.3e-20 100.9 141 47.5
Sc12g0008870 Simmondsia chinensis HOM05D002282 ORTHO05D002403 2.1e-19 99.8 75 69.3
ATR0580G098 Amborella trichopoda HOM05D002282 ORTHO05D002403 3.5e-19 99.0 133 48.9
A09p61400 Brassica napus HOM05D002282 ORTHO05D002403 1.7e-18 96.7 117 49.6
AUR62016386 Chenopodium quinoa HOM05D002282 ORTHO05D002403 4.3e-17 92.0 67 70.1
unitig_747.g21506 Utricularia gibba HOM05D002282 ORTHO05D002403 1.3e-16 90.5 136 45.6
TPR.G8058 Trifolium pratense HOM05D002282 ORTHO05D002403 1.6e-16 90.1 67 71.6
CDE06G0942 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 2.8e-16 89.4 112 50.9
Glyma.08G210000 Glycine max HOM05D002282 ORTHO05D002403 4.8e-16 88.6 116 48.3
BraA09t41511Z Brassica rapa HOM05D002282 ORTHO05D002403 6.2e-16 88.2 112 49.1
FAN21G1567 Fragaria x ananassa HOM05D002282 ORTHO05D002403 1.2e-14 84.0 139 46.8
Glyma.07G032500 Glycine max HOM05D002282 ORTHO05D002403 5.4e-12 75.1 57 68.4
MD15G1388000 Malus domestica HOM05D002282 ORTHO05D002403 9.3e-12 74.3 79 59.5
Glyma.13G363200 Glycine max HOM05D002282 ORTHO05D002403 4.6e-11 72.0 116 41.4
BcaC05g25485 Brassica carinata HOM05D002282 ORTHO05D002403 1.7e-10 70.1 55 60.0
MD12G1094800 Malus domestica HOM05D002282 ORTHO05D002403 5.1e-10 68.6 66 62.1
Lj5A688G9 Lonicera japonica HOM05D002282 ORTHO05D002403 4.8e-08 62.0 85 41.2
Lj3A826G75 Lonicera japonica HOM05D002282 ORTHO05D002403 1.1e-07 60.8 85 40.0
MD14G1090800 Malus domestica HOM05D002282 ORTHO05D002403 1.1e-07 60.8 116 42.2
Mapoly0078s0006 Marchantia polymorpha HOM05D002282 ORTHO05D002403 1.4e-07 60.5 123 35.0
Lsat_1_v5_gn_6_76141 Lactuca sativa HOM05D002282 ORTHO05D002403 9.0e-07 57.8 96 37.5
Pp3c7_70 Physcomitrium patens HOM05D002282 ORTHO05D002403 1.5e-06 57.0 118 31.4
Haze_04567 Corylus avellana HOM05D002282 ORTHO05D002403 2.6e-06 56.2 141 31.9
GSVIVG01035079001 Vitis vinifera HOM05D002282 ORTHO05D002403 3.4e-06 55.8 134 32.1
arahy.Tifrunner.gnm1.ann1.3PI56D Arachis hypogaea HOM05D002282 ORTHO05D002403 4.5e-06 55.5 129 31.0
arahy.Tifrunner.gnm1.ann1.C0TKG5 Arachis hypogaea HOM05D002282 ORTHO05D002403 4.5e-06 55.5 129 31.0
Glyma.15G010600 Glycine max HOM05D002282 ORTHO05D002403 5.8e-06 55.1 43 62.8
Lj4g0005439 Lotus japonicus HOM05D002282 ORTHO05D002403 5.8e-06 55.1 125 33.6
Lj4g0022588 Lotus japonicus HOM05D002282 ORTHO05D002403 5.8e-06 55.1 125 33.6


User provided reference genes

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