Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr00c0496g0575211 Helianthus annuus HOM05D000445 ORTHO05D000314 4.4e-42 174.1 81 100.0
HanXRQChr00c0349g0573991 Helianthus annuus HOM05D000445 ORTHO05D000314 2.9e-38 161.4 75 100.0
HanXRQChr00c0394g0574511 Helianthus annuus HOM05D000445 ORTHO05D000314 2.9e-38 161.4 75 100.0
HanXRQChr00c0451g0574821 Helianthus annuus HOM05D000445 ORTHO05D000314 2.9e-38 161.4 75 100.0
HanXRQChr00c0454g0574911 Helianthus annuus HOM05D000445 ORTHO05D000314 2.9e-38 161.4 75 100.0
HanXRQChr00c0524g0575411 Helianthus annuus HOM05D000445 ORTHO05D000314 2.9e-38 161.4 75 100.0
HanXRQChr01g0020161 Helianthus annuus HOM05D000445 ORTHO05D000314 2.9e-38 161.4 75 100.0
HanXRQChr05g0152341 Helianthus annuus HOM05D000445 ORTHO05D000314 2.9e-38 161.4 75 100.0
HanXRQChr10g0284471 Helianthus annuus HOM05D000445 ORTHO05D000314 2.9e-38 161.4 75 100.0
HanXRQChr11g0321171 Helianthus annuus HOM05D000445 ORTHO05D000314 2.9e-38 161.4 75 100.0
HanXRQChr11g0327091 Helianthus annuus HOM05D000445 ORTHO05D000314 2.9e-38 161.4 75 100.0
HanXRQChr11g0333801 Helianthus annuus HOM05D000445 ORTHO05D000314 2.9e-38 161.4 75 100.0
HanXRQChr12g0369911 Helianthus annuus HOM05D000445 ORTHO05D000314 2.9e-38 161.4 75 100.0
HanXRQChr13g0416601 Helianthus annuus HOM05D000445 ORTHO05D000314 2.9e-38 161.4 75 100.0
HanXRQChr13g0418951 Helianthus annuus HOM05D000445 ORTHO05D000314 2.9e-38 161.4 75 100.0
HanXRQChr15g0474951 Helianthus annuus HOM05D000445 ORTHO05D000314 2.9e-38 161.4 75 100.0
HanXRQCPg0580251 Helianthus annuus HOM05D000445 ORTHO05D000314 2.9e-38 161.4 75 100.0
HanXRQCPg0580471 Helianthus annuus HOM05D000445 ORTHO05D000314 2.9e-38 161.4 75 100.0
HanXRQChr11g0336101 Helianthus annuus HOM05D000445 ORTHO05D000314 1.5e-37 159.1 75 98.7
HanXRQChr11g0336121 Helianthus annuus HOM05D000445 ORTHO05D000314 1.5e-37 159.1 75 98.7
Lsat_1_v5_gn_3_105620 Lactuca sativa HOM05D000445 ORTHO05D000314 2.3e-35 151.8 75 96.0
Lsat_1_v5_gn_3_13441 Lactuca sativa HOM05D000445 ORTHO05D000314 2.3e-35 151.8 75 96.0
Lsat_1_v5_gn_8_26500 Lactuca sativa HOM05D000445 ORTHO05D000314 2.3e-35 151.8 75 96.0
Lsat_1_v5_gn_9_18701 Lactuca sativa HOM05D000445 ORTHO05D000314 2.3e-35 151.8 75 96.0
LjContig00489g0008652 Lotus japonicus HOM05D000445 ORTHO05D000314 2.3e-35 151.8 75 92.0
PGR111G0085 Punica granatum HOM05D000445 ORTHO05D000314 5.2e-35 150.6 75 92.0
PGR111G0100 Punica granatum HOM05D000445 ORTHO05D000314 5.2e-35 150.6 75 92.0
ATR0258G003 Amborella trichopoda HOM05D000445 ORTHO05D000314 8.8e-35 149.8 80 86.2
Gohir.A04G039060 Gossypium hirsutum HOM05D000445 ORTHO05D000314 1.5e-34 149.1 74 91.9
Hma1.2p1_0192F.1_g083680 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 2.0e-34 148.7 75 90.7
Hma1.2p1_0192F.1_g083690 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 2.0e-34 148.7 75 90.7
Hma1.2p1_4210F.1_g338452 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 2.0e-34 148.7 75 90.7
Lj4g0020232 Lotus japonicus HOM05D000445 ORTHO05D000314 3.4e-34 147.9 75 90.7
LjContig00318g0022366 Lotus japonicus HOM05D000445 ORTHO05D000314 3.4e-34 147.9 75 90.7
LjContig00319g0026737 Lotus japonicus HOM05D000445 ORTHO05D000314 3.4e-34 147.9 75 90.7
Nitab4.5_0000223g0190 Nicotiana tabacum HOM05D000445 ORTHO05D000314 3.4e-34 147.9 75 90.7
Sc05g0004090 Simmondsia chinensis HOM05D000445 ORTHO05D000314 1.7e-33 145.6 75 90.7
Sc25g0001980 Simmondsia chinensis HOM05D000445 ORTHO05D000314 1.7e-33 145.6 75 90.7
Gohir.D01G101865 Gossypium hirsutum HOM05D000445 ORTHO05D000314 2.8e-33 144.8 76 88.2
Solyc00g500037.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 4.9e-33 144.1 75 89.3
Solyc00g500046.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 4.9e-33 144.1 75 89.3
Solyc00g500081.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 4.9e-33 144.1 75 89.3
Solyc00g500128.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 4.9e-33 144.1 75 89.3
Solyc00g500198.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 4.9e-33 144.1 75 89.3
Solyc00g500327.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 4.9e-33 144.1 75 89.3
unitig_91.g26530 Utricularia gibba HOM05D000445 ORTHO05D000314 8.3e-33 143.3 75 90.7
CAN.G413.6 Capsicum annuum HOM05D000445 ORTHO05D000314 5.4e-32 140.6 75 86.7
Solyc09g031840.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 7.0e-32 140.2 75 86.7
Nn233s45563 Nelumbo nucifera HOM05D000445 ORTHO05D000314 1.6e-31 139.0 75 86.7
Nn269s46007 Nelumbo nucifera HOM05D000445 ORTHO05D000314 1.6e-31 139.0 75 86.7
EL10As18g24166 Beta vulgaris HOM05D000445 ORTHO05D000314 4.5e-31 137.5 75 86.7
Nn070s42380 Nelumbo nucifera HOM05D000445 ORTHO05D000314 2.9e-30 134.8 75 85.3
ATCG00860 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 5.0e-30 134.0 75 85.3
ATCG01280 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 5.0e-30 134.0 75 85.3
arahy.Tifrunner.gnm1.ann1.U896IL Arachis hypogaea HOM05D000445 ORTHO05D000314 5.0e-30 134.0 75 84.0
arahy.Tifrunner.gnm1.ann1.Z1U5RE Arachis hypogaea HOM05D000445 ORTHO05D000314 5.0e-30 134.0 75 84.0
CARHR282560 Cardamine hirsuta HOM05D000445 ORTHO05D000314 5.0e-30 134.0 75 85.3
RcHm_v2.0_CPg0501801 Rosa chinensis HOM05D000445 ORTHO05D000314 8.6e-30 133.3 75 81.3
RcHm_v2.0_CPg0502611 Rosa chinensis HOM05D000445 ORTHO05D000314 8.6e-30 133.3 75 81.3
Potri.013G143400 Populus trichocarpa HOM05D000445 ORTHO05D000314 1.9e-29 132.1 76 84.2
SabraPtG0004600 Salix brachista HOM05D000445 ORTHO05D000314 1.9e-29 132.1 76 84.2
SabraPtG0006900 Salix brachista HOM05D000445 ORTHO05D000314 1.9e-29 132.1 76 84.2
Ah.10g027230 Amaranthus hybridus HOM05D000445 ORTHO05D000314 2.5e-29 131.7 80 78.8
Ah.10g027290 Amaranthus hybridus HOM05D000445 ORTHO05D000314 2.5e-29 131.7 80 78.8
Ah.10g027420 Amaranthus hybridus HOM05D000445 ORTHO05D000314 2.5e-29 131.7 80 78.8
Ah.10g027670 Amaranthus hybridus HOM05D000445 ORTHO05D000314 2.5e-29 131.7 80 78.8
Ah.10g027730 Amaranthus hybridus HOM05D000445 ORTHO05D000314 2.5e-29 131.7 80 78.8
TAR383G0379 Trochodendron aralioides HOM05D000445 ORTHO05D000314 3.3e-29 131.3 75 82.7
CsaV3_UNG209000 Cucumis sativus L. HOM05D000445 ORTHO05D000314 5.6e-29 130.6 75 82.7
C06p21350 Brassica napus HOM05D000445 ORTHO05D000314 1.2e-28 129.4 75 82.7
BolSC29t60491H Brassica oleracea HOM05D000445 ORTHO05D000314 1.2e-28 129.4 75 82.7
BraSC103t45415Z Brassica rapa HOM05D000445 ORTHO05D000314 1.2e-28 129.4 75 82.7
BraSC103t45439Z Brassica rapa HOM05D000445 ORTHO05D000314 1.2e-28 129.4 75 82.7
BraSC138t45546Z Brassica rapa HOM05D000445 ORTHO05D000314 1.2e-28 129.4 75 82.7
BraSC143t45643Z Brassica rapa HOM05D000445 ORTHO05D000314 1.2e-28 129.4 75 82.7
BraSC25t45893Z Brassica rapa HOM05D000445 ORTHO05D000314 1.2e-28 129.4 75 82.7
C04p22510 Brassica napus HOM05D000445 ORTHO05D000314 8.0e-28 126.7 75 81.3
HanXRQChr00c0533g0575551 Helianthus annuus HOM05D000445 ORTHO05D000314 1.4e-27 125.9 62 95.2
Lalb_Chr07g0191931 Lupinus albus HOM05D000445 ORTHO05D000314 3.0e-27 124.8 71 84.5
PSO548G0004 Papaver somniferum HOM05D000445 ORTHO05D000314 3.0e-27 124.8 77 79.2
PSO548G0115 Papaver somniferum HOM05D000445 ORTHO05D000314 3.0e-27 124.8 77 79.2
Lsat_1_v5_gn_7_67161 Lactuca sativa HOM05D000445 ORTHO05D000314 5.2e-27 124.0 76 81.6
Nitab4.5_0001379g0050 Nicotiana tabacum HOM05D000445 ORTHO05D000314 8.9e-27 123.2 69 82.6
HanXRQChr00c0593g0576441 Helianthus annuus HOM05D000445 ORTHO05D000314 1.3e-25 119.4 55 100.0
HanXRQChr04g0127431 Helianthus annuus HOM05D000445 ORTHO05D000314 1.4e-24 115.9 53 100.0
DCAR_032529 Daucus carota HOM05D000445 ORTHO05D000314 3.2e-24 114.8 85 69.4
DCAR_032547 Daucus carota HOM05D000445 ORTHO05D000314 3.2e-24 114.8 85 69.4
RcHm_v2.0_Chr2g0118441 Rosa chinensis HOM05D000445 ORTHO05D000314 7.0e-24 113.6 71 74.6
HanXRQChr00c0165g0572211 Helianthus annuus HOM05D000445 ORTHO05D000314 3.9e-22 107.8 75 70.7
Nitab4.5_0023562g0020 Nicotiana tabacum HOM05D000445 ORTHO05D000314 5.6e-21 104.0 62 80.6
BolSC47t61053H Brassica oleracea HOM05D000445 ORTHO05D000314 4.0e-19 97.8 62 80.6
Lsat_1_v5_gn_9_42020 Lactuca sativa HOM05D000445 ORTHO05D000314 4.0e-19 97.8 67 73.1
Oeu012817.1 Olea europaea HOM05D000445 ORTHO05D000314 5.2e-19 97.4 54 83.3
Thhalv10001808m.g Eutrema salsugineum HOM05D000445 ORTHO05D000314 5.8e-18 94.0 75 65.3
Oeu062872.1 Olea europaea HOM05D000445 ORTHO05D000314 3.7e-17 91.3 49 81.6
Solyc03g080130.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 6.4e-17 90.5 75 62.7
Solyc00g500148.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.9e-16 89.0 54 77.8
Gorai.002G166000 Gossypium raimondii HOM05D000445 ORTHO05D000314 9.2e-16 86.7 74 58.1
Nitab4.5_0027450g0020 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.0e-14 83.2 45 84.4
Hund08796 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.0e-14 83.2 76 61.8
Hund10280 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.0e-14 83.2 76 61.8
Hund26852 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.0e-14 83.2 76 61.8
Hund28591 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.0e-14 83.2 76 61.8
Hund28646 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.0e-14 83.2 76 61.8
Hund28772 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.0e-14 83.2 76 61.8
Hund29402 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.0e-14 83.2 76 61.8
Hund29423 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.0e-14 83.2 76 61.8
Oeu045554.1 Olea europaea HOM05D000445 ORTHO05D000314 2.3e-14 82.0 49 79.6
Oeu058356.1 Olea europaea HOM05D000445 ORTHO05D000314 3.0e-14 81.6 44 86.4
Solyc11g021063.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 6.6e-14 80.5 62 72.6
Medtr4g047930 Medicago truncatula HOM05D000445 ORTHO05D000314 7.3e-13 77.0 73 60.3
Medtr5g010700 Medicago truncatula HOM05D000445 ORTHO05D000314 4.7e-12 74.3 73 58.9
Medtr8g024820 Medicago truncatula HOM05D000445 ORTHO05D000314 6.2e-12 73.9 73 58.9
Gohir.A02G069301 Gossypium hirsutum HOM05D000445 ORTHO05D000314 8.1e-12 73.6 33 93.9
Solyc10g018990.3 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.4e-11 72.8 38 89.5
Migut.D01373 Erythranthe guttata HOM05D000445 ORTHO05D000314 8.9e-11 70.1 58 69.0
Nitab4.5_0014666g0070 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.5e-10 69.3 35 94.3
SalBow1G2507 Salvia bowleyana HOM05D000445 ORTHO05D000314 5.8e-10 67.4 42 73.8
Lsat_1_v5_gn_5_121240 Lactuca sativa HOM05D000445 ORTHO05D000314 1.3e-09 66.2 34 85.3
Lalb_Chr12g0206601 Lupinus albus HOM05D000445 ORTHO05D000314 1.7e-09 65.9 37 83.8
Oeu015121.1 Olea europaea HOM05D000445 ORTHO05D000314 2.2e-09 65.5 47 66.0
Gohir.D10G110850 Gossypium hirsutum HOM05D000445 ORTHO05D000314 4.9e-09 64.3 36 75.0
EL10Ac2g04287 Beta vulgaris HOM05D000445 ORTHO05D000314 6.4e-09 63.9 34 85.3
Migut.D01405 Erythranthe guttata HOM05D000445 ORTHO05D000314 1.9e-08 62.4 39 79.5
C09p24780 Brassica napus HOM05D000445 ORTHO05D000314 4.1e-08 61.2 34 82.4
BolSC44t60838H Brassica oleracea HOM05D000445 ORTHO05D000314 4.1e-08 61.2 34 82.4
Solyc02g014800.2 Solanum lycopersicum HOM05D000445 ORTHO05D000314 7.1e-08 60.5 34 79.4
Ah.10g029020 Amaranthus hybridus HOM05D000445 ORTHO05D000314 2.1e-07 58.9 36 75.0
Gohir.A12G088950 Gossypium hirsutum HOM05D000445 ORTHO05D000314 2.1e-07 58.9 31 83.9
Gohir.D02G149651 Gossypium hirsutum HOM05D000445 ORTHO05D000314 2.7e-07 58.5 30 86.7
Nitab4.5_0004376g0100 Nicotiana tabacum HOM05D000445 ORTHO05D000314 2.7e-07 58.5 80 48.8
EL10As9g23920 Beta vulgaris HOM05D000445 ORTHO05D000314 3.5e-07 58.2 28 92.9
HanXRQChr00c0392g0574461 Helianthus annuus HOM05D000445 ORTHO05D000314 6.0e-07 57.4 75 44.0
HanXRQChr05g0152501 Helianthus annuus HOM05D000445 ORTHO05D000314 6.0e-07 57.4 75 44.0
Gorai.005G167600 Gossypium raimondii HOM05D000445 ORTHO05D000314 1.0e-06 56.6 30 80.0
Nitab4.5_0003101g0090 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.7e-06 55.8 27 85.2
Dinv39830 Davidia involucrata HOM05D000445 ORTHO05D000314 5.1e-06 54.3 65 47.7


User provided reference genes

Program Settings