Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr00c0368g0574161 Helianthus annuus HOM05D004473 ORTHO05D005652 4.8e-288 993.8 501 100.0
HanXRQCPg0579741 Helianthus annuus HOM05D004473 ORTHO05D005652 4.8e-288 993.8 501 100.0
HanXRQChr00c0125g0571751 Helianthus annuus HOM05D004473 ORTHO05D005652 1.4e-268 929.1 502 94.8
HanXRQChr11g0326581 Helianthus annuus HOM05D004473 ORTHO05D005652 2.2e-248 862.1 501 89.0
Lsat_1_v5_gn_7_76981 Lactuca sativa HOM05D004473 ORTHO05D005652 1.5e-228 796.2 442 91.0
Hma1.2p1_4210F.1_g338470 Hydrangea macrophylla HOM05D004473 ORTHO05D005652 6.5e-221 770.8 506 79.1
Lj2P1239T154 Lonicera japonica HOM05D004473 ORTHO05D005652 2.9e-213 745.3 505 75.6
DCAR_032465 Daucus carota HOM05D004473 ORTHO05D005652 8.0e-203 710.7 511 73.6
Sopen01g008040 Solanum pennellii HOM05D004473 ORTHO05D005652 6.6e-197 691.0 496 73.0
CAN.G939.10 Capsicum annuum HOM05D004473 ORTHO05D005652 7.5e-193 677.6 507 71.6
EL10As2g23210 Beta vulgaris HOM05D004473 ORTHO05D005652 9.9e-193 677.2 504 70.4
RcHm_v2.0_CPg0502521 Rosa chinensis HOM05D004473 ORTHO05D005652 1.1e-191 673.7 506 69.0
Hund29659 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.7e-189 666.4 508 70.7
ScUNg0001290 Simmondsia chinensis HOM05D004473 ORTHO05D005652 5.1e-189 664.8 505 68.7
PGR111G0117 Punica granatum HOM05D004473 ORTHO05D005652 1.1e-186 657.1 502 70.1
Hund27810 Selenicereus undatus HOM05D004473 ORTHO05D005652 7.6e-185 651.0 510 69.6
Hund30056 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.2e-183 645.6 510 69.4
Hund29400 Selenicereus undatus HOM05D004473 ORTHO05D005652 9.2e-183 644.0 510 69.2
Atru.chr6.757 Acer truncatum HOM05D004473 ORTHO05D005652 1.6e-182 643.3 506 66.0
Hund30352 Selenicereus undatus HOM05D004473 ORTHO05D005652 4.6e-182 641.7 508 69.1
SalBow1G8010 Salvia bowleyana HOM05D004473 ORTHO05D005652 3.0e-181 639.0 509 66.8
PSO548G0076 Papaver somniferum HOM05D004473 ORTHO05D005652 2.4e-175 619.4 507 66.1
Hund29000 Selenicereus undatus HOM05D004473 ORTHO05D005652 7.1e-175 617.8 508 67.3
Hund29926 Selenicereus undatus HOM05D004473 ORTHO05D005652 6.0e-174 614.8 508 66.9
Sed0024057 Sechium edule HOM05D004473 ORTHO05D005652 4.3e-172 608.6 505 64.6
Medtr3g035685 Medicago truncatula HOM05D004473 ORTHO05D005652 1.3e-171 607.1 493 64.7
Potri.013G138201 Populus trichocarpa HOM05D004473 ORTHO05D005652 1.3e-171 607.1 509 64.2
Hund28272 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.4e-170 603.6 510 65.7
Solyc00g500048.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 9.3e-167 590.9 496 65.3
Solyc00g500131.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 9.3e-167 590.9 496 65.3
Solyc00g500201.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 9.3e-167 590.9 496 65.3
Solyc00g500295.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 9.3e-167 590.9 496 65.3
Solyc00g500330.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 9.3e-167 590.9 496 65.3
C06p21390 Brassica napus HOM05D004473 ORTHO05D005652 1.6e-163 580.1 510 61.4
BraSC143t45676Z Brassica rapa HOM05D004473 ORTHO05D005652 2.1e-163 579.7 510 61.4
ATCG00040 Arabidopsis thaliana HOM05D004473 ORTHO05D005652 3.1e-162 575.9 510 61.0
Hund10282 Selenicereus undatus HOM05D004473 ORTHO05D005652 6.9e-162 574.7 510 63.7
BcaC05g28805 Brassica carinata HOM05D004473 ORTHO05D005652 9.0e-162 574.3 510 61.2
Gohir.A04G039120 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.2e-161 573.9 455 67.9
Sed0017792 Sechium edule HOM05D004473 ORTHO05D005652 1.3e-160 570.5 505 61.8
Medtr4g051280 Medicago truncatula HOM05D004473 ORTHO05D005652 8.4e-160 567.8 493 61.7
TWI34G1450 Tripterygium wilfordii HOM05D004473 ORTHO05D005652 1.6e-158 563.5 440 67.3
Lalb_Chr07g0191541 Lupinus albus HOM05D004473 ORTHO05D005652 2.1e-155 553.1 509 60.1
Eucgr.D01147 Eucalyptus grandis HOM05D004473 ORTHO05D005652 2.8e-155 552.7 421 69.8
Medtr0002s0390 Medicago truncatula HOM05D004473 ORTHO05D005652 1.8e-154 550.1 510 58.6
Medtr7g021760 Medicago truncatula HOM05D004473 ORTHO05D005652 5.3e-154 548.5 493 61.5
Hund29405 Selenicereus undatus HOM05D004473 ORTHO05D005652 4.2e-151 538.9 523 61.2
Hund25918 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.6e-150 537.0 407 70.5
HanXRQChr00c0572g0575931 Helianthus annuus HOM05D004473 ORTHO05D005652 2.2e-147 526.6 337 82.5
Gohir.A04G039150 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.8e-146 523.5 425 66.6
LjContig00489g0020099 Lotus japonicus HOM05D004473 ORTHO05D005652 2.9e-144 516.2 507 57.6
Lj2P1238T61 Lonicera japonica HOM05D004473 ORTHO05D005652 7.2e-143 511.5 338 76.6
BraSC25t45889Z Brassica rapa HOM05D004473 ORTHO05D005652 1.6e-142 510.4 472 60.0
LjContig00318g0021272 Lotus japonicus HOM05D004473 ORTHO05D005652 1.1e-140 504.2 509 57.2
Eucgr.D00924 Eucalyptus grandis HOM05D004473 ORTHO05D005652 1.6e-134 483.8 482 56.8
Lsat_1_v5_gn_2_89740 Lactuca sativa HOM05D004473 ORTHO05D005652 2.2e-131 473.4 308 80.2
BraSC151t45687Z Brassica rapa HOM05D004473 ORTHO05D005652 3.7e-115 419.5 394 58.9
Peaxi162Scf00219g00048 Petunia axillaris HOM05D004473 ORTHO05D001250 3.1e-114 416.4 357 66.1
GSVIVG01022885001 Vitis vinifera HOM05D004473 ORTHO05D005652 1.2e-113 414.5 451 53.4
Gohir.1Z050066 Gossypium hirsutum HOM05D004473 ORTHO05D005652 7.7e-113 411.8 508 51.0
SGA_v2.0_scaffold479G52250 Striga asiatica HOM05D004473 ORTHO05D005652 4.4e-108 396.0 391 56.3
CAN.G386.22 Capsicum annuum HOM05D004473 ORTHO05D005652 3.8e-104 382.9 301 69.1
Gohir.A08G095662 Gossypium hirsutum HOM05D004473 ORTHO05D005652 2.3e-101 373.6 294 67.0
arahy.Tifrunner.gnm1.ann1.40BINF Arachis hypogaea HOM05D004473 ORTHO05D005652 2.2e-99 367.1 479 48.0
Hund11181 Selenicereus undatus HOM05D004473 ORTHO05D005652 9.2e-98 361.7 506 47.0
PGSC0003DMG400041047 Solanum tuberosum HOM05D004473 ORTHO05D005652 1.4e-93 347.8 231 74.5
Gohir.1Z049403 Gossypium hirsutum HOM05D004473 ORTHO05D005652 4.4e-92 342.8 433 48.5
HanXRQChr00c0524g0575451 Helianthus annuus HOM05D004473 ORTHO05D005652 2.3e-88 330.5 217 80.2
Peaxi162Scf00211g00244 Petunia axillaris HOM05D004473 ORTHO05D005652 2.4e-82 310.5 276 64.5
HanXRQChr00c0126g0571831 Helianthus annuus HOM05D004473 ORTHO05D005652 7.6e-76 288.9 145 99.3
arahy.Tifrunner.gnm1.ann1.3DS1LI Arachis hypogaea HOM05D004473 ORTHO05D005652 1.6e-73 281.2 267 57.3
arahy.Tifrunner.gnm1.ann1.SGP77C Arachis hypogaea HOM05D004473 ORTHO05D005652 1.6e-73 281.2 267 57.3
BolC2t10578H Brassica oleracea HOM05D004473 ORTHO05D005652 1.3e-72 278.1 211 64.9
BolSC37t60777H Brassica oleracea HOM05D004473 ORTHO05D005652 1.3e-72 278.1 211 64.9
BolSC45t60885H Brassica oleracea HOM05D004473 ORTHO05D005652 1.3e-72 278.1 211 64.9
BolSC45t60929H Brassica oleracea HOM05D004473 ORTHO05D005652 1.3e-72 278.1 211 64.9
BolSC46t60978H Brassica oleracea HOM05D004473 ORTHO05D005652 1.3e-72 278.1 211 64.9
Nitab4.5_0011099g0050 Nicotiana tabacum HOM05D004473 ORTHO05D005652 8.4e-67 258.8 168 75.6
HanXRQChr16g0503961 Helianthus annuus HOM05D004473 ORTHO05D005652 5.1e-64 249.6 129 100.0
Nn4g24630 Nelumbo nucifera HOM05D004473 ORTHO05D005652 8.7e-64 248.8 184 69.6
HanXRQChr00c0165g0572181 Helianthus annuus HOM05D004473 ORTHO05D005652 1.6e-62 244.6 119 100.0
Nn2g10392 Nelumbo nucifera HOM05D004473 ORTHO05D005652 2.1e-62 244.2 271 53.1
CAN.G85.6 Capsicum annuum HOM05D004473 ORTHO05D005652 1.8e-61 241.1 157 75.8
Migut.D01408 Erythranthe guttata HOM05D004473 ORTHO05D005652 9.9e-60 235.3 318 43.4
Gorai.002G165800 Gossypium raimondii HOM05D001387 ORTHO05D001250 1.3e-59 235.0 319 44.8
Hund10683 Selenicereus undatus HOM05D004473 ORTHO05D005652 6.4e-59 232.6 301 51.5
HanXRQChr16g0503951 Helianthus annuus HOM05D004473 ORTHO05D005652 6.0e-57 226.1 163 76.1
CAN.G100.39 Capsicum annuum HOM05D004473 ORTHO05D005652 1.0e-56 225.3 157 71.3
BcaB03g16404 Brassica carinata HOM05D004473 ORTHO05D005652 1.3e-56 224.9 220 57.7
Nitab4.5_0007979g0030 Nicotiana tabacum HOM05D001387 ORTHO05D001250 9.6e-55 218.8 471 36.9
CAN.G1738.12 Capsicum annuum HOM05D004473 ORTHO05D005652 9.0e-53 212.2 143 72.7
Hund10684 Selenicereus undatus HOM05D004473 ORTHO05D005652 4.5e-52 209.9 148 71.6
Psat0s1330g0240 Pisum sativum HOM05D004473 ORTHO05D005652 1.7e-51 208.0 192 58.3
Peaxi162Scf00211g00223 Petunia axillaris HOM05D004473 ORTHO05D005652 4.2e-50 203.4 122 79.5
Thhalv10001851m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 4.3e-47 193.4 234 47.9
Oeu012780.1 Olea europaea HOM05D001387 ORTHO05D001250 1.1e-42 178.7 127 71.7
BolSC49t61206H Brassica oleracea HOM05D004473 ORTHO05D005652 1.6e-41 174.9 124 69.4
Thhalv10028154m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 5.1e-40 169.9 192 50.5
Solyc09g061390.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 1.1e-39 168.7 117 72.6
MELO3C027413.2 Cucumis melo HOM05D004473 ORTHO05D005652 2.8e-38 164.1 143 60.1
TPR.G10220 Trifolium pratense HOM05D004473 ORTHO05D005652 4.8e-38 163.3 136 61.0
CAN.G575.33 Capsicum annuum HOM05D004473 ORTHO05D000001 1.2e-36 158.7 114 68.4
HanXRQChr00c0165g0572171 Helianthus annuus HOM05D004473 ORTHO05D005652 7.6e-36 156.0 86 90.7
Gorai.001G044100 Gossypium raimondii HOM05D004473 ORTHO05D005652 1.9e-34 151.4 132 64.4
HanXRQChr00c0496g0575171 Helianthus annuus HOM05D004473 ORTHO05D005652 2.5e-34 151.0 82 87.8
Nitab4.5_0001439g0120 Nicotiana tabacum HOM05D004473 ORTHO05D005652 3.0e-32 144.1 115 69.6
Gohir.A08G070362 Gossypium hirsutum HOM05D004473 ORTHO05D005652 5.1e-32 143.3 129 63.6
arahy.Tifrunner.gnm1.ann1.EJ7WQI Arachis hypogaea HOM05D004473 ORTHO05D005652 6.7e-32 142.9 130 63.1
CAN.G156.6 Capsicum annuum HOM05D004473 ORTHO05D005652 5.7e-31 139.8 121 56.2
CAN.G219.14 Capsicum annuum HOM05D004473 ORTHO05D005652 2.8e-30 137.5 85 75.3
Duzib147G0859 Durio zibethinus HOM05D004473 ORTHO05D005696 8.2e-30 136.0 102 61.8
arahy.Tifrunner.gnm1.ann1.85ZYV6 Arachis hypogaea HOM05D004473 ORTHO05D005652 1.1e-29 135.6 175 46.3
Nn020s41490 Nelumbo nucifera HOM05D004473 ORTHO05D005652 2.2e-27 127.9 83 78.3
TPR.G40775 Trifolium pratense HOM05D004473 ORTHO05D005652 5.0e-27 126.7 116 52.6
BraSC59t46519Z Brassica rapa HOM05D004473 ORTHO05D005652 8.5e-27 125.9 139 55.4
Medtr7g098060 Medicago truncatula HOM05D004473 ORTHO05D005652 4.2e-26 123.6 107 59.8
Nn1g08463 Nelumbo nucifera HOM05D004473 ORTHO05D005652 5.5e-26 123.2 105 61.0
Peaxi162Scf00219g00049 Petunia axillaris HOM05D004473 ORTHO05D005652 7.2e-26 122.9 98 66.3
Gorai.001G230600 Gossypium raimondii HOM05D004473 ORTHO05D005652 3.6e-25 120.6 122 59.8
Thhalv10012215m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 2.3e-24 117.9 392 28.1
Gorai.013G056700 Gossypium raimondii HOM05D004473 ORTHO05D005652 1.5e-23 115.2 119 54.6
Gorai.005G171000 Gossypium raimondii HOM05D004473 ORTHO05D005652 2.5e-23 114.4 82 64.6
Medtr7g117940 Medicago truncatula HOM05D004473 ORTHO05D005652 7.4e-23 112.8 91 61.5
CAN.G130.4 Capsicum annuum HOM05D004473 ORTHO05D005652 2.8e-22 110.9 74 67.6
Hund04106 Selenicereus undatus HOM05D004473 ORTHO05D005652 4.8e-22 110.2 161 44.1
Gohir.A07G155811 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.8e-21 108.2 79 72.2
Atru.chr7.156 Acer truncatum HOM05D004473 ORTHO05D005652 9.1e-21 105.9 83 62.7
Nn3g16148 Nelumbo nucifera HOM05D004473 ORTHO05D005652 3.4e-20 104.0 77 70.1
GSVIVG01022429001 Vitis vinifera HOM05D004473 ORTHO05D005652 3.8e-19 100.5 115 47.8
SMO086G0023 Selaginella moellendorffii HOM05D004473 ORTHO05D005652 4.2e-18 97.1 399 26.6
Nn8g40470 Nelumbo nucifera HOM05D004473 ORTHO05D005652 1.4e-16 92.0 53 88.7
Gorai.003G179600 Gossypium raimondii HOM05D004473 ORTHO05D005652 6.7e-16 89.7 66 63.6
Medtr2g089590 Medicago truncatula HOM05D004473 ORTHO05D005652 1.5e-15 88.6 68 70.6
Lalb_Chr13g0292931 Lupinus albus HOM05D004473 ORTHO05D005652 2.2e-14 84.7 76 56.6
Oeu062869.1 Olea europaea HOM05D004473 ORTHO05D005652 1.7e-11 75.1 57 63.2
GSVIVG01020677001 Vitis vinifera HOM05D004473 ORTHO05D005652 1.7e-11 75.1 46 69.6
MD15G1438900 Malus domestica HOM05D004473 ORTHO05D005652 2.2e-11 74.7 65 67.7
Medtr2g089600 Medicago truncatula HOM05D004473 ORTHO05D005652 1.1e-10 72.4 62 58.1
Oeu051131.1 Olea europaea HOM05D000388 ORTHO05D004227 1.5e-10 72.0 78 50.0
AUR62037881 Chenopodium quinoa HOM05D001387 ORTHO05D001250 1.2e-09 68.9 41 73.2
Manes.10G075803 Manihot esculenta HOM05D004473 ORTHO05D005652 1.6e-09 68.6 54 68.5
MELO3C000879.2 Cucumis melo HOM05D004473 ORTHO05D005652 2.1e-09 68.2 43 74.4
MELO3C027497.2 Cucumis melo HOM05D004473 ORTHO05D005652 2.1e-09 68.2 43 74.4
Os11g0517350 Oryza sativa ssp. japonica HOM05D004473 ORTHO05D005652 2.7e-09 67.8 62 51.6
FAN24G2630 Fragaria x ananassa HOM05D004473 ORTHO05D005652 4.7e-09 67.0 83 51.8
Migut.D01003 Erythranthe guttata HOM05D004473 ORTHO05D005652 6.1e-09 66.6 78 50.0
GSVIVG01001302001 Vitis vinifera HOM05D004473 ORTHO05D005652 8.0e-09 66.2 57 61.4
Oeu020582.1 Olea europaea HOM05D004473 ORTHO05D005652 1.4e-08 65.5 47 63.8
TPR.G40774 Trifolium pratense HOM05D004473 ORTHO05D005652 3.3e-07 60.8 42 76.2
Mapoly1406s0001 Marchantia polymorpha HOM05D004473 ORTHO05D005652 4.8e-06 57.0 74 36.5
BraSC58t46474Z Brassica rapa HOM05D004473 ORTHO05D005652 6.3e-06 56.6 48 54.2


User provided reference genes

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