Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr00c0336g0573681 Helianthus annuus HOM05D000533 ORTHO05D006151 5.6e-84 314.3 167 100.0
HanXRQChr02g0059731 Helianthus annuus HOM05D000533 ORTHO05D006151 5.6e-84 314.3 167 100.0
HanXRQChr15g0465421 Helianthus annuus HOM05D000533 ORTHO05D001069 5.6e-84 314.3 167 100.0
HanXRQChr15g0465471 Helianthus annuus HOM05D000533 ORTHO05D001069 5.6e-84 314.3 167 100.0
HanXRQChr17g0569711 Helianthus annuus HOM05D000533 ORTHO05D001069 5.6e-84 314.3 167 100.0
HanXRQChr17g0569761 Helianthus annuus HOM05D000533 ORTHO05D001069 5.6e-84 314.3 167 100.0
HanXRQCPg0580331 Helianthus annuus HOM05D000533 ORTHO05D001069 5.6e-84 314.3 167 100.0
Peaxi162Scf00030g02119 Petunia axillaris HOM05D000533 ORTHO05D006151 9.9e-81 303.5 165 95.8
Peaxi162Scf00269g01411 Petunia axillaris HOM05D000533 ORTHO05D006151 9.9e-81 303.5 165 95.8
PGR111G0107 Punica granatum HOM05D000533 ORTHO05D006151 1.7e-80 302.8 165 97.0
HanXRQChr09g0258491 Helianthus annuus HOM05D000533 ORTHO05D006151 5.4e-79 297.7 159 100.0
CAN.G1045.11 Capsicum annuum HOM05D000533 ORTHO05D006151 2.7e-78 295.4 164 94.5
CAN.G1298.19 Capsicum annuum HOM05D000533 ORTHO05D006151 2.7e-78 295.4 164 94.5
CAN.G1526.2 Capsicum annuum HOM05D000533 ORTHO05D006151 2.7e-78 295.4 164 94.5
CAN.G278.1 Capsicum annuum HOM05D000533 ORTHO05D006151 2.7e-78 295.4 164 94.5
CAN.G413.10 Capsicum annuum HOM05D000533 ORTHO05D006151 2.7e-78 295.4 164 94.5
CAN.G939.4 Capsicum annuum HOM05D000533 ORTHO05D006151 2.7e-78 295.4 164 94.5
RcHm_v2.0_CPg0502751 Rosa chinensis HOM05D000533 ORTHO05D006151 3.5e-78 295.0 165 93.9
C09p24660 Brassica napus HOM05D000533 ORTHO05D006151 4.6e-78 294.7 165 93.3
C09p40170 Brassica napus HOM05D000533 ORTHO05D006151 4.6e-78 294.7 165 93.3
BolSC29t60508H Brassica oleracea HOM05D000533 ORTHO05D006151 4.6e-78 294.7 165 93.3
BolSC35t60690H Brassica oleracea HOM05D000533 ORTHO05D006151 4.6e-78 294.7 165 93.3
BolSC35t60706H Brassica oleracea HOM05D000533 ORTHO05D006151 4.6e-78 294.7 165 93.3
BraSC143t45658Z Brassica rapa HOM05D000533 ORTHO05D006151 4.6e-78 294.7 165 93.3
BraSC59t46553Z Brassica rapa HOM05D000533 ORTHO05D006151 4.6e-78 294.7 165 93.3
TAR625G0707 Trochodendron aralioides HOM05D000533 ORTHO05D006151 1.0e-77 293.5 165 94.5
BolC2t10613H Brassica oleracea HOM05D000533 ORTHO05D006151 1.3e-77 293.1 165 92.7
BolSC46t60956H Brassica oleracea HOM05D000533 ORTHO05D006151 1.7e-77 292.7 165 92.7
DCAR_018912 Daucus carota HOM05D000533 ORTHO05D006151 1.7e-77 292.7 162 95.7
DCAR_032540 Daucus carota HOM05D000533 ORTHO05D006151 1.7e-77 292.7 162 95.7
RcHm_v2.0_Chr5g0017191 Rosa chinensis HOM05D000533 ORTHO05D006151 1.7e-77 292.7 165 93.3
AL9U11958 Arabidopsis lyrata HOM05D000533 ORTHO05D006151 2.3e-77 292.4 165 92.7
ATCG01090 Arabidopsis thaliana HOM05D000533 ORTHO05D006151 2.3e-77 292.4 165 92.7
Solyc03g013615.1 Solanum lycopersicum HOM05D000533 ORTHO05D006151 3.9e-77 291.6 164 84.8
BolSC47t61063H Brassica oleracea HOM05D000533 ORTHO05D006151 1.1e-76 290.0 166 92.2
PSO548G0083 Papaver somniferum HOM05D000533 ORTHO05D006151 1.1e-76 290.0 165 92.7
Migut.D01250 Erythranthe guttata HOM05D000533 ORTHO05D006151 5.6e-76 287.7 166 92.8
Ciclev10013971m.g Citrus clementina HOM05D000533 ORTHO05D006151 7.3e-76 287.3 165 91.5
Ciclev10013973m.g Citrus clementina HOM05D000533 ORTHO05D006151 7.3e-76 287.3 165 91.5
Lalb_Chr07g0191791 Lupinus albus HOM05D000533 ORTHO05D006151 9.6e-76 287.0 158 96.2
Nn031s41615 Nelumbo nucifera HOM05D000533 ORTHO05D006151 9.6e-76 287.0 165 90.9
Nn064s42208 Nelumbo nucifera HOM05D000533 ORTHO05D006151 9.6e-76 287.0 165 90.9
Medtr3g450170 Medicago truncatula HOM05D000533 ORTHO05D006151 3.6e-75 285.0 158 95.6
Medtr4g006100 Medicago truncatula HOM05D000533 ORTHO05D001069 3.6e-75 285.0 158 95.6
Medtr6g042210 Medicago truncatula HOM05D000533 ORTHO05D006151 3.6e-75 285.0 158 95.6
Medtr7g021700 Medicago truncatula HOM05D000533 ORTHO05D006151 3.6e-75 285.0 158 95.6
Psat0s6989g0200 Pisum sativum HOM05D000533 ORTHO05D006151 3.6e-75 285.0 158 95.6
Psat6g140600 Pisum sativum HOM05D000533 ORTHO05D006151 3.6e-75 285.0 158 95.6
Psat6g140640 Pisum sativum HOM05D000533 ORTHO05D006151 3.6e-75 285.0 158 95.6
LjContig00318g0022534 Lotus japonicus HOM05D000533 ORTHO05D006151 1.8e-74 282.7 158 95.6
LjContig00319g0019672 Lotus japonicus HOM05D000533 ORTHO05D006151 1.8e-74 282.7 158 95.6
Psat3g095000 Pisum sativum HOM05D000533 ORTHO05D006151 1.8e-74 282.7 158 94.9
C02p28830 Brassica napus HOM05D000533 ORTHO05D006151 1.2e-73 280.0 165 89.7
SalBow1G0791 Salvia bowleyana HOM05D000533 ORTHO05D006151 3.4e-73 278.5 165 89.7
BolSC45t60907H Brassica oleracea HOM05D000533 ORTHO05D006151 9.9e-73 276.9 158 92.4
Gohir.A08G123600 Gossypium hirsutum HOM05D000533 ORTHO05D006151 9.9e-73 276.9 166 81.3
Lj2P1238T111 Lonicera japonica HOM05D000533 ORTHO05D006151 1.4e-71 273.1 165 88.5
Lju5009P0T51 Lonicera japonica HOM05D000533 ORTHO05D006151 1.4e-71 273.1 165 88.5
Medtr0002s0160 Medicago truncatula HOM05D000533 ORTHO05D006151 5.4e-71 271.2 163 87.1
Psat4g190120 Pisum sativum HOM05D000533 ORTHO05D006151 7.1e-71 270.8 158 91.8
HanXRQChr00c0718g0576981 Helianthus annuus HOM05D000533 ORTHO05D006151 3.3e-68 261.9 167 80.2
QL93p0141_0017 Quercus lobata HOM05D000533 ORTHO05D006151 4.3e-68 261.5 165 85.5
Medtr4g050810 Medicago truncatula HOM05D000533 ORTHO05D006151 2.2e-64 249.2 158 79.1
HanXRQChr13g0413911 Helianthus annuus HOM05D000533 ORTHO05D006151 1.4e-63 246.5 140 94.3
Nn1g00559 Nelumbo nucifera HOM05D000533 ORTHO05D006151 4.2e-63 245.0 157 85.4
HanXRQChr13g0413691 Helianthus annuus HOM05D000533 ORTHO05D006151 1.2e-62 243.4 140 93.6
HanXRQChr13g0413761 Helianthus annuus HOM05D000533 ORTHO05D006151 1.2e-62 243.4 140 93.6
HanXRQChr13g0413841 Helianthus annuus HOM05D000533 ORTHO05D006151 1.2e-62 243.4 140 93.6
Gohir.A09G046292 Gossypium hirsutum HOM05D000533 ORTHO05D006151 1.6e-62 243.0 166 81.3
Solyc11g021220.2 Solanum lycopersicum HOM05D000533 ORTHO05D006151 3.5e-62 241.9 144 81.2
Aqoxy4G02725 Aquilegia oxysepala HOM05D000533 ORTHO05D006151 2.1e-59 232.6 129 96.1
HanXRQChr00c0495g0575151 Helianthus annuus HOM05D000533 ORTHO05D006151 3.7e-59 231.9 155 77.4
Medtr3g054410 Medicago truncatula HOM05D000533 ORTHO05D006151 3.7e-59 231.9 133 84.2
TPR.G38950 Trifolium pratense HOM05D000533 ORTHO05D006151 2.2e-56 222.6 131 82.4
Mapoly0048s0041 Marchantia polymorpha HOM05D000533 ORTHO05D006151 3.2e-55 218.8 164 65.2
HanXRQChr00c0504g0575311 Helianthus annuus HOM05D000533 ORTHO05D006151 5.5e-55 218.0 102 100.0
SabraPtG0005600 Salix brachista HOM05D000533 ORTHO05D006151 6.0e-54 214.5 154 78.6
Sed0013644 Sechium edule HOM05D000533 ORTHO05D006151 1.3e-53 213.4 102 98.0
Sed0017608 Sechium edule HOM05D000533 ORTHO05D006151 1.3e-53 213.4 102 98.0
HanXRQChr13g0421831 Helianthus annuus HOM05D000533 ORTHO05D006151 3.0e-53 212.2 119 97.5
Gohir.1Z049779 Gossypium hirsutum HOM05D000533 ORTHO05D006151 3.9e-53 211.8 140 85.0
CSS0023353 Camellia sinensis var. sinensis HOM05D000533 ORTHO05D006151 3.3e-52 208.8 119 94.1
Lsat_1_v5_gn_4_118101 Lactuca sativa HOM05D000533 ORTHO05D006151 3.3e-52 208.8 141 75.9
C07p33460 Brassica napus HOM05D000533 ORTHO05D006151 1.3e-51 206.8 123 91.9
Medtr5g015855 Medicago truncatula HOM05D000533 ORTHO05D006151 1.6e-51 206.5 130 87.7
Sed0016654 Sechium edule HOM05D000533 ORTHO05D006151 1.6e-51 206.5 99 98.0
MBI10_g47589_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 3.4e-49 198.7 118 91.5
MBI10_g47594_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 3.4e-49 198.7 118 91.5
Gohir.D11G334051 Gossypium hirsutum HOM05D000533 ORTHO05D006151 4.5e-49 198.4 97 95.9
Nitab4.5_0007979g0080 Nicotiana tabacum HOM05D000533 ORTHO05D006151 2.9e-48 195.7 139 73.4
Psat1g104880 Pisum sativum HOM05D000533 ORTHO05D006151 6.5e-48 194.5 97 93.8
Manes.17G012402 Manihot esculenta HOM05D000533 ORTHO05D006151 4.2e-47 191.8 157 66.2
Sed0021575 Sechium edule HOM05D000533 ORTHO05D006151 1.6e-46 189.9 95 92.6
BolSC29t60548H Brassica oleracea HOM05D000533 ORTHO05D006151 4.6e-46 188.3 94 91.5
BolSC49t61145H Brassica oleracea HOM05D000533 ORTHO05D006151 6.0e-46 188.0 94 91.5
BraSC103t45431Z Brassica rapa HOM05D000533 ORTHO05D006151 6.0e-46 188.0 94 91.5
C09p40320 Brassica napus HOM05D000533 ORTHO05D006151 1.0e-45 187.2 92 93.5
CARHR282460 Cardamine hirsuta HOM05D000533 ORTHO05D006151 1.0e-45 187.2 92 93.5
Gohir.A04G053104 Gossypium hirsutum HOM05D000533 ORTHO05D006151 1.0e-45 187.2 92 94.6
BraSC179t45772Z Brassica rapa HOM05D000533 ORTHO05D006151 3.0e-45 185.7 94 90.4
BolSC44t60824H Brassica oleracea HOM05D000533 ORTHO05D006151 3.9e-45 185.3 91 93.4
Gohir.A06G128502 Gossypium hirsutum HOM05D000533 ORTHO05D006151 2.5e-44 182.6 99 86.9
Gohir.D06G133750 Gossypium hirsutum HOM05D000533 ORTHO05D006151 3.3e-44 182.2 91 92.3
HanXRQChr15g0464661 Helianthus annuus HOM05D000533 ORTHO05D006151 8.2e-43 177.6 100 96.0
Ciclev10010202m.g Citrus clementina HOM05D000533 ORTHO05D006151 3.1e-42 175.6 124 70.2
HanXRQChr01g0000261 Helianthus annuus HOM05D000533 ORTHO05D006151 5.3e-42 174.9 98 96.9
Gohir.D03G073128 Gossypium hirsutum HOM05D000533 ORTHO05D006151 1.5e-41 173.3 83 96.4
Gohir.A11G178850 Gossypium hirsutum HOM05D000533 ORTHO05D006151 4.5e-41 171.8 95 84.2
Solyc02g011780.3 Solanum lycopersicum HOM05D000533 ORTHO05D006151 2.2e-40 169.5 138 64.5
Peaxi162Scf00137g00153 Petunia axillaris HOM05D000533 ORTHO05D006151 1.4e-39 166.8 97 82.5
Gorai.002G166200 Gossypium raimondii HOM05D000533 ORTHO05D006151 2.5e-39 166.0 95 81.1
Glyma.18G155500 Glycine max HOM05D000533 ORTHO05D006151 9.3e-39 164.1 92 81.5
HanXRQChr05g0152461 Helianthus annuus HOM05D000533 ORTHO05D006151 4.6e-38 161.8 92 84.8
Medtr5g063400 Medicago truncatula HOM05D000533 ORTHO05D006151 1.4e-37 160.2 94 81.9
arahy.Tifrunner.gnm1.ann1.92D98S Arachis hypogaea HOM05D000533 ORTHO05D006151 1.1e-36 157.1 92 81.5
arahy.Tifrunner.gnm1.ann1.FN06MZ Arachis hypogaea HOM05D000533 ORTHO05D006151 1.1e-36 157.1 92 81.5
arahy.Tifrunner.gnm1.ann1.JR5HFJ Arachis hypogaea HOM05D000533 ORTHO05D006151 1.1e-36 157.1 92 81.5
SMO086G0041 Selaginella moellendorffii HOM05D000533 ORTHO05D006151 1.9e-36 156.4 155 52.3
Psat0s411g0080 Pisum sativum HOM05D000533 ORTHO05D006151 5.7e-36 154.8 91 82.4
QL93p0957_0002 Quercus lobata HOM05D000533 ORTHO05D006151 3.7e-35 152.1 91 80.2
GSVIVG01029923001 Vitis vinifera HOM05D000533 ORTHO05D006151 8.2e-35 151.0 85 83.5
HanXRQChr00c0328g0573621 Helianthus annuus HOM05D000533 ORTHO05D006151 2.4e-34 149.4 76 93.4
Lalb_Chr09g0335441 Lupinus albus HOM05D000533 ORTHO05D006151 5.3e-34 148.3 158 52.5
Haze_27676 Corylus avellana HOM05D000533 ORTHO05D006151 9.1e-34 147.5 89 79.8
Ciclev10030456m.g Citrus clementina HOM05D000533 ORTHO05D006151 1.3e-32 143.7 72 93.1
HanXRQChr02g0037961 Helianthus annuus HOM05D000533 ORTHO05D006151 9.4e-31 137.5 105 69.5
Psat0s1160g0360 Pisum sativum HOM05D000533 ORTHO05D006151 4.7e-30 135.2 69 92.8
MELO3C000180.2 Cucumis melo HOM05D000533 ORTHO05D006151 7.9e-30 134.4 65 96.9
Lsat_1_v5_gn_6_54141 Lactuca sativa HOM05D000533 ORTHO05D006151 1.0e-29 134.0 117 64.1
HanXRQChr01g0020061 Helianthus annuus HOM05D000533 ORTHO05D006151 2.8e-27 125.9 78 80.8
MELO3C031835.2 Cucumis melo HOM05D000533 ORTHO05D006151 3.7e-27 125.6 65 89.2
Migut.D01385 Erythranthe guttata HOM05D000533 ORTHO05D006151 7.7e-25 117.9 158 46.8
HanXRQChr02g0037941 Helianthus annuus HOM05D000003 ORTHO05D000004 1.6e-22 110.2 76 73.7
ClCG07G005240 Citrullus lanatus HOM05D000533 ORTHO05D006151 4.7e-22 108.6 89 58.4
BolSC37t60795H Brassica oleracea HOM05D000533 ORTHO05D006151 3.9e-21 105.5 54 90.7
HanXRQChr00c0289g0573151 Helianthus annuus HOM05D000533 ORTHO05D002807 3.9e-21 105.5 74 74.3
Nitab4.5_0001313g0070 Nicotiana tabacum HOM05D001200 ORTHO05D009778 8.8e-21 104.4 72 70.8
BolC2t10598H Brassica oleracea HOM05D000533 ORTHO05D006151 1.1e-20 104.0 54 88.9
BolC9t56914H Brassica oleracea HOM05D000533 ORTHO05D006151 1.5e-20 103.6 53 90.6
BolC2t08928H Brassica oleracea HOM05D000533 ORTHO05D006151 9.7e-20 100.9 53 88.7
BraSC138t45533Z Brassica rapa HOM05D000533 ORTHO05D006151 2.8e-19 99.4 76 65.8
Lalb_Chr19g0130301 Lupinus albus HOM05D000533 ORTHO05D006151 4.8e-19 98.6 81 59.3
Eucgr.H02873 Eucalyptus grandis HOM05D000533 ORTHO05D006151 1.8e-18 96.7 64 70.3
Solyc01g086880.3 Solanum lycopersicum HOM05D000533 ORTHO05D006151 2.4e-18 96.3 70 64.3
MELO3C029885.2 Cucumis melo HOM05D000533 ORTHO05D006151 5.9e-17 91.7 48 91.7
BraSC58t46463Z Brassica rapa HOM05D000533 ORTHO05D006151 3.8e-16 89.0 45 88.9
Lsat_1_v5_gn_5_95761 Lactuca sativa HOM05D002069 ORTHO05D009794 8.5e-16 87.8 43 95.3
Medtr4g070120 Medicago truncatula HOM05D000533 ORTHO05D006151 5.5e-15 85.1 114 44.7
Potri.013G074950 Populus trichocarpa HOM05D000533 ORTHO05D006151 1.2e-14 84.0 47 78.7
Gohir.D01G099050 Gossypium hirsutum HOM05D000533 ORTHO05D006151 2.1e-14 83.2 41 95.1
Lalb_Chr18g0049621 Lupinus albus HOM05D000533 ORTHO05D006151 2.3e-13 79.7 55 69.1
BolSC37t60802H Brassica oleracea HOM05D000533 ORTHO05D006151 2.6e-12 76.3 40 92.5
Hund17909 Selenicereus undatus HOM05D000533 ORTHO05D006151 4.4e-12 75.5 49 73.5
BraSC25t45912Z Brassica rapa HOM05D000533 ORTHO05D006151 5.7e-12 75.1 38 89.5
Haze_02267 Corylus avellana HOM05D000533 ORTHO05D006151 2.2e-11 73.2 62 58.1
Medtr8g086030 Medicago truncatula HOM05D000533 ORTHO05D006151 1.8e-10 70.1 52 65.4
RcHm_v2.0_Chr2g0140171 Rosa chinensis HOM05D007741 ORTHO05D015647 1.2e-06 57.4 37 75.7
Atru.chr9.2056 Acer truncatum HOM05D001098 ORTHO05D002527 2.1e-06 56.6 25 100.0
Aa31LG5G21720 Aethionema arabicum HOM05D000533 ORTHO05D006151 2.7e-06 56.2 129 35.7
Glyma.05G236100 Glycine max HOM05D004278 ORTHO05D005544 4.7e-06 55.5 121 38.8
ClCG08G006540 Citrullus lanatus HOM05D000533 ORTHO05D006151 6.1e-06 55.1 29 86.2


User provided reference genes

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