Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr00c0289g0573141 Helianthus annuus HOM05D007371 ORTHO05D009319 2.9e-48 194.9 99 100.0
HanXRQChr00c0336g0573671 Helianthus annuus HOM05D007371 ORTHO05D009319 2.9e-48 194.9 99 100.0
HanXRQChr02g0059721 Helianthus annuus HOM05D007371 ORTHO05D009319 2.9e-48 194.9 99 100.0
HanXRQChr09g0258501 Helianthus annuus HOM05D007371 ORTHO05D009319 2.9e-48 194.9 99 100.0
HanXRQChr15g0465431 Helianthus annuus HOM05D007371 ORTHO05D009319 2.9e-48 194.9 99 100.0
HanXRQChr15g0465461 Helianthus annuus HOM05D007371 ORTHO05D009319 2.9e-48 194.9 99 100.0
HanXRQChr17g0569721 Helianthus annuus HOM05D007371 ORTHO05D009319 2.9e-48 194.9 99 100.0
HanXRQChr17g0569751 Helianthus annuus HOM05D007371 ORTHO05D009319 2.9e-48 194.9 99 100.0
HanXRQCPg0580341 Helianthus annuus HOM05D007371 ORTHO05D009319 2.9e-48 194.9 99 100.0
DCAR_032539 Daucus carota HOM05D007371 ORTHO05D009319 2.0e-44 182.2 99 89.9
Migut.D01251 Erythranthe guttata HOM05D007371 ORTHO05D009319 2.2e-43 178.7 99 85.9
CAN.G1526.6 Capsicum annuum HOM05D007371 ORTHO05D009319 1.1e-42 176.4 99 86.9
CAN.G278.2 Capsicum annuum HOM05D007371 ORTHO05D009319 1.1e-42 176.4 99 86.9
CAN.G939.5 Capsicum annuum HOM05D007371 ORTHO05D009319 1.1e-42 176.4 99 86.9
SalBow1G7973 Salvia bowleyana HOM05D007371 ORTHO05D009319 1.1e-42 176.4 99 84.8
PGR111G0032 Punica granatum HOM05D007371 ORTHO05D009319 5.4e-42 174.1 99 86.9
Nn031s41614 Nelumbo nucifera HOM05D007371 ORTHO05D009319 9.1e-42 173.3 99 85.9
Nn064s42209 Nelumbo nucifera HOM05D007371 ORTHO05D009319 9.1e-42 173.3 99 85.9
Gohir.1Z049431 Gossypium hirsutum HOM05D007371 ORTHO05D009319 1.2e-41 172.9 99 85.9
Gohir.1Z049679 Gossypium hirsutum HOM05D007371 ORTHO05D009319 1.2e-41 172.9 99 85.9
Gohir.A02G134600 Gossypium hirsutum HOM05D007371 ORTHO05D009319 1.2e-41 172.9 99 85.9
TAR625G0296 Trochodendron aralioides HOM05D007371 ORTHO05D009319 2.0e-41 172.2 99 85.9
Lj9P89T22 Lonicera japonica HOM05D007371 ORTHO05D009319 4.5e-41 171.0 99 85.9
RcHm_v2.0_Chr5g0017201 Rosa chinensis HOM05D007371 ORTHO05D009319 4.5e-41 171.0 99 85.9
RcHm_v2.0_CPg0502761 Rosa chinensis HOM05D007371 ORTHO05D009319 4.5e-41 171.0 99 85.9
Lj2P1238T112 Lonicera japonica HOM05D007371 ORTHO05D009319 5.9e-41 170.6 99 85.9
Lju5009P0T52 Lonicera japonica HOM05D007371 ORTHO05D009319 5.9e-41 170.6 99 85.9
Nn3g20215 Nelumbo nucifera HOM05D007371 ORTHO05D009319 7.7e-41 170.2 99 84.8
Thecc.08G131100 Theobroma cacao HOM05D007371 ORTHO05D009319 2.3e-40 168.7 99 84.8
Gohir.A09G046246 Gossypium hirsutum HOM05D007371 ORTHO05D009319 2.9e-40 168.3 99 83.8
RcHm_v2.0_Chr5g0043021 Rosa chinensis HOM05D007371 ORTHO05D009319 2.9e-40 168.3 99 84.8
CAN.G965.5 Capsicum annuum HOM05D007371 ORTHO05D009319 5.0e-40 167.5 99 81.8
PSO548G0046 Papaver somniferum HOM05D007371 ORTHO05D009319 5.0e-40 167.5 99 81.8
Medtr4g006110 Medicago truncatula HOM05D007371 ORTHO05D009319 2.5e-39 165.2 98 82.7
Medtr7g021710 Medicago truncatula HOM05D007371 ORTHO05D009319 2.5e-39 165.2 98 82.7
Lalb_Chr07g0191781 Lupinus albus HOM05D007371 ORTHO05D009319 3.2e-39 164.9 99 82.8
Solyc03g013600.1 Solanum lycopersicum HOM05D007371 ORTHO05D009319 3.2e-39 164.9 99 82.8
C09p24650 Brassica napus HOM05D007371 ORTHO05D009319 1.2e-38 162.9 99 80.8
C09p40180 Brassica napus HOM05D007371 ORTHO05D009319 1.2e-38 162.9 99 80.8
BolC2t10597H Brassica oleracea HOM05D007371 ORTHO05D009319 1.2e-38 162.9 99 80.8
BolSC29t60507H Brassica oleracea HOM05D007371 ORTHO05D009319 1.2e-38 162.9 99 80.8
BolSC29t60622H Brassica oleracea HOM05D007371 ORTHO05D009319 1.2e-38 162.9 99 80.8
BolSC35t60705H Brassica oleracea HOM05D007371 ORTHO05D009319 1.2e-38 162.9 99 80.8
BolSC37t60794H Brassica oleracea HOM05D007371 ORTHO05D009319 1.2e-38 162.9 99 80.8
BolSC47t61064H Brassica oleracea HOM05D007371 ORTHO05D009319 1.2e-38 162.9 99 80.8
BraA10t43431Z Brassica rapa HOM05D007371 ORTHO05D009319 1.2e-38 162.9 99 80.8
BraSC103t45430Z Brassica rapa HOM05D007371 ORTHO05D009319 1.2e-38 162.9 99 80.8
BraSC179t45773Z Brassica rapa HOM05D007371 ORTHO05D009319 1.2e-38 162.9 99 80.8
BraSC59t46552Z Brassica rapa HOM05D007371 ORTHO05D009319 1.2e-38 162.9 99 80.8
Gohir.D12G089301 Gossypium hirsutum HOM05D007371 ORTHO05D009319 1.6e-38 162.5 99 80.8
Medtr6g042220 Medicago truncatula HOM05D007371 ORTHO05D009319 1.6e-38 162.5 99 81.8
Gohir.D06G133700 Gossypium hirsutum HOM05D007371 ORTHO05D009319 3.6e-38 161.4 99 81.8
AL9U11956 Arabidopsis lyrata HOM05D007371 ORTHO05D009319 8.0e-38 160.2 99 78.8
ATCG01080 Arabidopsis thaliana HOM05D007371 ORTHO05D009319 1.0e-37 159.8 99 77.8
Gohir.A03G146201 Gossypium hirsutum HOM05D007371 ORTHO05D009319 1.0e-37 159.8 99 78.8
CARHR282450 Cardamine hirsuta HOM05D007371 ORTHO05D009319 1.4e-37 159.5 99 78.8
BolC9t56922H Brassica oleracea HOM05D007371 ORTHO05D009319 8.8e-37 156.8 99 78.8
HanXRQChr05g0152451 Helianthus annuus HOM05D007371 ORTHO05D009319 2.6e-36 155.2 74 100.0
HanXRQChr08g0211951 Helianthus annuus HOM05D007371 ORTHO05D009319 2.6e-36 155.2 74 100.0
BraSC25t45911Z Brassica rapa HOM05D007371 ORTHO05D009319 3.4e-36 154.8 93 80.6
Solyc02g011770.1 Solanum lycopersicum HOM05D007371 ORTHO05D009319 1.3e-35 152.9 99 76.8
Medtr5g063410 Medicago truncatula HOM05D007371 ORTHO05D009319 2.2e-35 152.1 98 78.6
Peaxi162Scf00338g00628 Petunia axillaris HOM05D007371 ORTHO05D009319 2.8e-35 151.8 99 77.8
Medtr0002s0160 Medicago truncatula HOM05D000533 ORTHO05D006151 3.7e-35 151.4 99 71.7
C09p40330 Brassica napus HOM05D007371 ORTHO05D009319 1.1e-34 149.8 100 78.0
Nn1g08633 Nelumbo nucifera HOM05D007371 ORTHO05D009319 1.1e-31 139.8 75 85.3
Gohir.D04G175100 Gossypium hirsutum HOM05D007371 ORTHO05D009319 1.6e-30 136.0 75 82.7
Solyc07g026910.3 Solanum lycopersicum HOM05D007371 ORTHO05D009319 1.0e-29 133.3 75 81.3
Gohir.D07G194033 Gossypium hirsutum HOM05D007371 ORTHO05D009319 6.8e-29 130.6 76 86.8
BraSC58t46462Z Brassica rapa HOM05D007371 ORTHO05D009319 8.3e-27 123.6 75 76.0
Gorai.005G189900 Gossypium raimondii HOM05D007371 ORTHO05D009319 1.4e-26 122.9 78 73.1
arahy.Tifrunner.gnm1.ann1.UDKX9E Arachis hypogaea HOM05D000890 ORTHO05D000697 2.7e-25 118.6 67 79.1
Glyma.19G081000 Glycine max HOM05D007371 ORTHO05D009319 2.3e-24 115.5 76 72.4
arahy.Tifrunner.gnm1.ann1.4VL02K Arachis hypogaea HOM05D001200 ORTHO05D009778 1.1e-23 113.2 74 79.7
arahy.Tifrunner.gnm1.ann1.9I8ZI2 Arachis hypogaea HOM05D001200 ORTHO05D009778 1.1e-23 113.2 74 79.7
arahy.Tifrunner.gnm1.ann1.V71EA1 Arachis hypogaea HOM05D001200 ORTHO05D009778 1.1e-23 113.2 74 79.7
RcHm_v2.0_Chr4g0438011 Rosa chinensis HOM05D007371 ORTHO05D009319 3.3e-23 111.7 60 93.3
Gohir.D02G169550 Gossypium hirsutum HOM05D007371 ORTHO05D009319 3.6e-22 108.2 78 65.4
CAN.G256.22 Capsicum annuum HOM05D007371 ORTHO05D009319 2.3e-21 105.5 63 74.6
Nitab4.5_0007979g0070 Nicotiana tabacum HOM05D007371 ORTHO05D009319 4.0e-21 104.8 61 86.9
Gorai.013G109900 Gossypium raimondii HOM05D007371 ORTHO05D009319 2.0e-17 92.4 56 75.0
Mapoly0048s0040 Marchantia polymorpha HOM05D007371 ORTHO05D009319 6.6e-16 87.4 99 46.5
C02p24280 Brassica napus HOM05D007371 ORTHO05D009319 8.1e-14 80.5 65 55.4
BraSC143t45659Z Brassica rapa HOM05D007371 ORTHO05D009319 3.7e-11 71.6 46 71.7
CAN.G262.7 Capsicum annuum HOM05D007371 ORTHO05D009319 3.2e-10 68.6 41 78.0
Potri.013G075100 Populus trichocarpa HOM05D007371 ORTHO05D009319 7.1e-10 67.4 43 65.1
SMO086G0016 Selaginella moellendorffii HOM05D007371 ORTHO05D009319 3.5e-09 65.1 98 43.9
Hund24330 Selenicereus undatus HOM05D007371 ORTHO05D009319 2.5e-07 58.9 41 68.3


User provided reference genes

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