Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr00c0300g0573221 Helianthus annuus HOM05D005015 ORTHO05D005696 7.4e-50 200.3 105 100.0
HanXRQChr00c0313g0573431 Helianthus annuus HOM05D000743 ORTHO05D000580 7.4e-42 173.7 120 80.0
HanXRQChr04g0120711 Helianthus annuus HOM05D000743 ORTHO05D000580 7.4e-42 173.7 120 80.0
HanXRQChr08g0210221 Helianthus annuus HOM05D000743 ORTHO05D000580 7.4e-42 173.7 120 80.0
HanXRQChr11g0326651 Helianthus annuus HOM05D000743 ORTHO05D000580 7.4e-42 173.7 120 80.0
HanXRQCPg0579841 Helianthus annuus HOM05D000743 ORTHO05D000580 7.4e-42 173.7 120 80.0
Lsat_1_v5_gn_1_38680 Lactuca sativa HOM05D005015 ORTHO05D005696 1.7e-41 172.6 119 79.0
Ah.10g027630 Amaranthus hybridus HOM05D005015 ORTHO05D005696 1.5e-39 166.0 119 74.8
PGR111G0021 Punica granatum HOM05D005015 ORTHO05D005696 1.3e-38 162.9 122 73.8
Potri.013G137900 Populus trichocarpa HOM05D005015 ORTHO05D005696 1.7e-38 162.5 122 73.8
Sed0007878 Sechium edule HOM05D005015 ORTHO05D005696 1.7e-38 162.5 101 83.2
EL10As12g24014 Beta vulgaris HOM05D000743 ORTHO05D000580 3.8e-38 161.4 119 73.1
CSS0020927 Camellia sinensis var. sinensis HOM05D005015 ORTHO05D005696 3.8e-38 161.4 129 69.8
Hund03959 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.4e-37 159.5 122 70.5
Hund19316 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.4e-37 159.5 122 70.5
Hund27454 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.4e-37 159.5 122 70.5
Hund27640 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.4e-37 159.5 122 70.5
Hund27652 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.4e-37 159.5 122 70.5
Hund27672 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.4e-37 159.5 122 70.5
Hund27697 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.4e-37 159.5 122 70.5
Hund27742 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.4e-37 159.5 122 70.5
Hund27807 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.4e-37 159.5 122 70.5
Hund27824 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.4e-37 159.5 122 70.5
Hund27931 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.4e-37 159.5 122 70.5
Hund27946 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.4e-37 159.5 122 70.5
Hund27994 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.4e-37 159.5 122 70.5
Hund28016 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.4e-37 159.5 122 70.5
Hund28060 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.4e-37 159.5 122 70.5
Hund28129 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.4e-37 159.5 122 70.5
Hund28142 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.4e-37 159.5 122 70.5
Hund28151 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.4e-37 159.5 122 70.5
Hund28161 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.4e-37 159.5 122 70.5
Hund28177 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.4e-37 159.5 122 70.5
Hund28187 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.4e-37 159.5 122 70.5
Hund28210 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.4e-37 159.5 122 70.5
Hund28258 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.4e-37 159.5 122 70.5
Hund28390 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.4e-37 159.5 122 70.5
Hund28502 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.4e-37 159.5 122 70.5
Hund28650 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.4e-37 159.5 122 70.5
Hund28906 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.4e-37 159.5 122 70.5
Hund29887 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.4e-37 159.5 122 70.5
Hund30205 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.4e-37 159.5 122 70.5
Hund30312 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.4e-37 159.5 122 70.5
Hund30436 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.4e-37 159.5 122 70.5
Hund30665 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.4e-37 159.5 122 70.5
Hund31017 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.4e-37 159.5 122 70.5
DCAR_032470 Daucus carota HOM05D005015 ORTHO05D005696 4.2e-37 157.9 122 70.5
LjContig00489g0021854 Lotus japonicus HOM05D005015 ORTHO05D005696 4.2e-37 157.9 127 70.1
CARHR281880 Cardamine hirsuta HOM05D005015 ORTHO05D005696 1.2e-36 156.4 122 70.5
Solyc00g500333.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 1.2e-36 156.4 102 82.4
RcHm_v2.0_CPg0502451 Rosa chinensis HOM05D005015 ORTHO05D005696 3.6e-36 154.8 122 68.9
Aa31csc39G190 Aethionema arabicum HOM05D005015 ORTHO05D005696 4.7e-36 154.5 129 66.7
HanXRQChr00c0272g0573041 Helianthus annuus HOM05D005015 ORTHO05D005696 7.9e-36 153.7 94 87.2
ATCG00130 Arabidopsis thaliana HOM05D005015 ORTHO05D005696 1.4e-35 152.9 122 68.9
Sed0007367 Sechium edule HOM05D005015 ORTHO05D005696 6.7e-35 150.6 127 66.9
Sed0025514 Sechium edule HOM05D005015 ORTHO05D005696 6.7e-35 150.6 127 66.9
CAN.G877.4 Capsicum annuum HOM05D005015 ORTHO05D005696 8.8e-35 150.2 123 68.3
Solyc00g500322.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 2.6e-34 148.7 107 75.7
BolSC37t60772H Brassica oleracea HOM05D005015 ORTHO05D005696 1.3e-33 146.4 132 62.1
BolSC49t61201H Brassica oleracea HOM05D005015 ORTHO05D005696 1.3e-33 146.4 132 62.1
BraSC140t45592Z Brassica rapa HOM05D005015 ORTHO05D005696 1.3e-33 146.4 132 62.1
BraSC143t45677Z Brassica rapa HOM05D005015 ORTHO05D005696 1.3e-33 146.4 132 62.1
LjContig00318g0021444 Lotus japonicus HOM05D005015 ORTHO05D005696 6.3e-33 144.1 129 62.0
Lalb_Chr08g0232621 Lupinus albus HOM05D005015 ORTHO05D005696 1.1e-32 143.3 122 66.4
BolSC46t60983H Brassica oleracea HOM05D005015 ORTHO05D005696 1.4e-32 142.9 133 60.9
BolSC29t60569H Brassica oleracea HOM05D005015 ORTHO05D005696 4.1e-32 141.4 134 59.7
Peaxi162Scf00211g00235 Petunia axillaris HOM05D000743 ORTHO05D005696 3.5e-31 138.3 135 61.5
BraSC140t45595Z Brassica rapa HOM05D005015 ORTHO05D005696 1.0e-30 136.7 131 59.5
BolSC45t60933H Brassica oleracea HOM05D005015 ORTHO05D005696 3.8e-30 134.8 135 59.3
BolSC45t60880H Brassica oleracea HOM05D005015 ORTHO05D005696 1.1e-29 133.3 125 60.8
Peaxi162Scf00379g00087 Petunia axillaris HOM05D005015 ORTHO05D005696 1.9e-29 132.5 166 50.6
Solyc02g012020.3 Solanum lycopersicum HOM05D005015 ORTHO05D005696 8.0e-28 127.1 143 53.8
HanXRQChr00c0746g0577131 Helianthus annuus HOM05D005015 ORTHO05D005696 1.1e-24 116.7 99 69.7
Gohir.D10G206350 Gossypium hirsutum HOM05D005015 ORTHO05D005696 7.7e-23 110.5 110 63.6
BraSC179t45790Z Brassica rapa HOM05D005015 ORTHO05D005696 2.9e-22 108.6 124 55.6
Gorai.011G231900 Gossypium raimondii HOM05D005015 ORTHO05D005696 3.8e-22 108.2 99 63.6
HanXRQChr04g0099301 Helianthus annuus HOM05D005015 ORTHO05D005696 7.5e-18 94.0 55 90.9
HanXRQChr10g0282491 Helianthus annuus HOM05D000743 ORTHO05D000580 7.5e-18 94.0 55 90.9
Gohir.A10G065880 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.3e-17 93.2 102 57.8
PSO548G0131 Papaver somniferum HOM05D005015 ORTHO05D005696 1.7e-17 92.8 46 97.8
SabraPtG0000800 Salix brachista HOM05D000743 ORTHO05D000580 3.7e-17 91.7 94 59.6
Migut.D01335 Erythranthe guttata HOM05D005015 ORTHO05D005696 1.1e-16 90.1 46 93.5
Lsat_1_v5_gn_3_117960 Lactuca sativa HOM05D005015 ORTHO05D005696 2.4e-16 89.0 58 81.0
Ah.10g027770 Amaranthus hybridus HOM05D005015 ORTHO05D005696 4.1e-16 88.2 55 80.0
BolSC29t60447H Brassica oleracea HOM05D005015 ORTHO05D005696 5.4e-16 87.8 46 91.3
Gohir.D01G157951 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.2e-15 86.7 46 91.3
Hma1.2p1_0414F.1_g147700 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 1.6e-15 86.3 46 89.1
Hma1.2p1_2181F.1_g316260 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 2.7e-15 85.5 55 80.0
Hma1.2p1_2181F.1_g316275 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 2.7e-15 85.5 55 80.0
CAN.G386.8 Capsicum annuum HOM05D000216 ORTHO05D001131 4.5e-15 84.7 56 76.8
CAN.G1648.11 Capsicum annuum HOM05D000216 ORTHO05D005696 5.9e-15 84.3 56 76.8
MELO3C000827.2 Cucumis melo HOM05D005015 ORTHO05D005696 5.9e-15 84.3 55 80.0
MELO3C027845.2 Cucumis melo HOM05D005015 ORTHO05D005696 5.9e-15 84.3 55 80.0
Gohir.A10G201450 Gossypium hirsutum HOM05D005015 ORTHO05D005696 7.7e-15 84.0 46 91.3
Gohir.D03G128101 Gossypium hirsutum HOM05D005015 ORTHO05D005696 7.7e-15 84.0 57 78.9
Gohir.D06G126233 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.0e-14 83.6 54 79.6
BraSC151t45691Z Brassica rapa HOM05D005015 ORTHO05D005696 1.7e-14 82.8 45 88.9
Peaxi162Scf00027g00003 Petunia axillaris HOM05D005015 ORTHO05D005696 1.7e-14 82.8 55 78.2
Atru.chr7.976 Acer truncatum HOM05D005015 ORTHO05D005696 2.2e-14 82.4 49 85.7
arahy.Tifrunner.gnm1.ann1.6U43FV Arachis hypogaea HOM05D005015 ORTHO05D005696 2.2e-14 82.4 55 78.2
Gorai.010G147200 Gossypium raimondii HOM05D005015 ORTHO05D005696 2.2e-14 82.4 55 76.4
Hund10285 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.2e-14 82.4 58 72.4
Hund30552 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.2e-14 82.4 58 72.4
Hund30554 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.2e-14 82.4 58 72.4
Gohir.A07G153850 Gossypium hirsutum HOM05D005015 ORTHO05D005696 2.9e-14 82.0 51 84.3
Glyma.12G231900 Glycine max HOM05D005015 ORTHO05D005696 3.8e-14 81.6 55 78.2
Medtr1g109420 Medicago truncatula HOM05D005015 ORTHO05D005696 3.8e-14 81.6 55 76.4
Cpa.g.sc30.79 Carica papaya HOM05D005015 ORTHO05D005696 5.0e-14 81.3 55 78.2
Gohir.A11G101400 Gossypium hirsutum HOM05D005015 ORTHO05D005696 8.5e-14 80.5 55 74.5
Psat0s2754g0200 Pisum sativum HOM05D000743 ORTHO05D000580 8.5e-14 80.5 58 72.4
Psat1g003840 Pisum sativum HOM05D000743 ORTHO05D000580 8.5e-14 80.5 58 72.4
Psat6g219360 Pisum sativum HOM05D000743 ORTHO05D000580 8.5e-14 80.5 58 72.4
Gorai.003G134800 Gossypium raimondii HOM05D005015 ORTHO05D005696 1.1e-13 80.1 55 76.4
Lalb_Chr03g0042651 Lupinus albus HOM05D005015 ORTHO05D005696 1.1e-13 80.1 55 76.4
Nitab4.5_0005637g0090 Nicotiana tabacum HOM05D005015 ORTHO05D005696 1.1e-13 80.1 55 76.4
Lj2C1239T52 Lonicera japonica HOM05D005015 ORTHO05D005696 1.9e-13 79.3 55 74.5
BNapus_Darmor_BZH_scaffold_253p00020 Brassica napus HOM05D005015 ORTHO05D005696 2.5e-13 79.0 55 72.7
BolSC44t60844H Brassica oleracea HOM05D005015 ORTHO05D005696 2.5e-13 79.0 48 87.5
Lalb_Chr09g0335321 Lupinus albus HOM05D005015 ORTHO05D005696 2.5e-13 79.0 48 81.2
MD16G1272100 Malus domestica HOM05D005015 ORTHO05D005696 2.5e-13 79.0 45 86.7
Nitab4.5_0027992g0020 Nicotiana tabacum HOM05D005015 ORTHO05D005696 3.2e-13 78.6 55 74.5
Gohir.A05G314033 Gossypium hirsutum HOM05D005015 ORTHO05D005696 7.2e-13 77.4 43 90.7
arahy.Tifrunner.gnm1.ann1.XNS64L Arachis hypogaea HOM05D001387 ORTHO05D005696 2.1e-12 75.9 49 79.6
BraSC140t45611Z Brassica rapa HOM05D005015 ORTHO05D005696 2.1e-12 75.9 90 52.2
Medtr4g071050 Medicago truncatula HOM05D005015 ORTHO05D005696 2.1e-12 75.9 49 79.6
Medtr0002s0540 Medicago truncatula HOM05D005015 ORTHO05D005696 2.7e-12 75.5 58 67.2
CAN.G612.5 Capsicum annuum HOM05D005015 ORTHO05D005696 8.0e-12 73.9 55 70.9
Nitab4.5_0003775g0050 Nicotiana tabacum HOM05D005015 ORTHO05D005696 8.0e-12 73.9 45 80.0
Solyc10g044535.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 8.0e-12 73.9 47 78.7
Gohir.D10G209550 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.0e-11 73.6 48 79.2
Gorai.011G122900 Gossypium raimondii HOM05D005015 ORTHO05D005696 1.0e-11 73.6 49 77.6
Solyc07g021380.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 1.0e-11 73.6 53 69.8
Gohir.A10G154675 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.4e-11 73.2 61 62.3
arahy.Tifrunner.gnm1.ann1.VXR7WZ Arachis hypogaea HOM05D005015 ORTHO05D005696 1.8e-11 72.8 49 77.6
Gorai.011G235400 Gossypium raimondii HOM05D005015 ORTHO05D005696 1.8e-11 72.8 48 77.1
Lalb_Chr07g0191421 Lupinus albus HOM05D005015 ORTHO05D005696 5.2e-11 71.2 48 72.9
TWI34G0268 Tripterygium wilfordii HOM05D005015 ORTHO05D005696 6.8e-11 70.9 55 70.9
Psat0s1586g0080 Pisum sativum HOM05D000743 ORTHO05D000580 8.8e-11 70.5 58 69.0
Eucgr.H02991 Eucalyptus grandis HOM05D005015 ORTHO05D005696 1.2e-10 70.1 65 63.1
Gohir.D05G292450 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.5e-10 69.7 51 72.5
Gorai.009G308800 Gossypium raimondii HOM05D005015 ORTHO05D005696 1.5e-10 69.7 51 72.5
Psat0s2288g0080 Pisum sativum HOM05D000743 ORTHO05D000580 3.7e-09 65.1 87 48.3
Lalb_Chr07g0192191 Lupinus albus HOM05D005015 ORTHO05D005696 6.3e-09 64.3 48 70.8
CsaV3_UNG207830 Cucumis sativus L. HOM05D000216 ORTHO05D003638 1.8e-08 62.8 40 80.0
EL10Ac5g12103 Beta vulgaris HOM05D005015 ORTHO05D005696 2.4e-08 62.4 60 61.7
Nitab4.5_0000435g0090 Nicotiana tabacum HOM05D005015 ORTHO05D005696 7.0e-08 60.8 35 80.0
Nn020s41497 Nelumbo nucifera HOM05D005015 ORTHO05D005696 1.2e-07 60.1 33 87.9
Nn1g01955 Nelumbo nucifera HOM05D005015 ORTHO05D005696 1.2e-07 60.1 33 87.9
Nn2g15007 Nelumbo nucifera HOM05D005015 ORTHO05D005696 1.2e-07 60.1 33 87.9
Sc09g0006540 Simmondsia chinensis HOM05D005573 ORTHO05D005696 2.7e-07 58.9 51 58.8
TPR.G15298 Trifolium pratense HOM05D005015 ORTHO05D005696 2.7e-07 58.9 42 71.4
Lj2C1238T11 Lonicera japonica HOM05D000743 ORTHO05D000580 3.5e-07 58.5 42 66.7
Duzib147G0859 Durio zibethinus HOM05D004473 ORTHO05D005696 5.9e-07 57.8 32 87.5
Migut.D01410 Erythranthe guttata HOM05D005015 ORTHO05D005696 1.0e-06 57.0 81 44.4
Gohir.A07G129651 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.3e-06 56.6 30 90.0
Lj1P433T25 Lonicera japonica HOM05D005015 ORTHO05D005696 1.3e-06 56.6 33 81.8
BolC2t10574H Brassica oleracea HOM05D005015 ORTHO05D005696 3.8e-06 55.1 33 78.8
BraSC25t45885Z Brassica rapa HOM05D005015 ORTHO05D005696 3.8e-06 55.1 33 78.8
BraSC58t46477Z Brassica rapa HOM05D005015 ORTHO05D005696 3.8e-06 55.1 33 78.8
SMO086G0010 Selaginella moellendorffii HOM05D005015 ORTHO05D005696 3.8e-06 55.1 132 30.3


User provided reference genes

Program Settings