Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr00c0234g0572741 Helianthus annuus HOM05D003517 ORTHO05D009794 4.1e-108 394.8 212 100.0
HanXRQMTg0579471 Helianthus annuus HOM05D003517 ORTHO05D009794 4.6e-107 391.3 210 99.5
Lj2P1233T102 Lonicera japonica HOM05D003517 ORTHO05D009794 9.2e-100 367.1 202 97.5
Lj2P1236T75 Lonicera japonica HOM05D003517 ORTHO05D009794 9.2e-100 367.1 202 97.5
DCAR_032460 Daucus carota HOM05D003517 ORTHO05D009794 3.9e-98 361.7 202 96.5
ATMG00270 Arabidopsis thaliana HOM05D003517 ORTHO05D009794 6.6e-98 360.9 202 96.0
BNapus_Darmor_BZH_scaffold_234p00290 Brassica napus HOM05D003517 ORTHO05D009794 6.6e-98 360.9 202 96.0
BolSC28t60338H Brassica oleracea HOM05D003517 ORTHO05D009794 6.6e-98 360.9 202 96.0
BolSC28t60397H Brassica oleracea HOM05D003517 ORTHO05D009794 6.6e-98 360.9 202 96.0
BraSC77t46643Z Brassica rapa HOM05D003517 ORTHO05D009794 6.6e-98 360.9 202 96.0
CARHR282730 Cardamine hirsuta HOM05D003517 ORTHO05D009794 6.6e-98 360.9 202 96.0
Sed0011263 Sechium edule HOM05D003517 ORTHO05D009794 8.6e-98 360.5 205 94.6
Sed0015872 Sechium edule HOM05D003517 ORTHO05D009794 8.6e-98 360.5 205 94.6
CANSAT16G0040 Cannabis sativa HOM05D003517 ORTHO05D009794 1.2e-96 356.7 202 94.6
HanXRQChr02g0049481 Helianthus annuus HOM05D003517 ORTHO05D009794 1.2e-96 356.7 197 97.0
RcHm_v2.0_MTg0498991 Rosa chinensis HOM05D003517 ORTHO05D009794 3.6e-96 355.1 200 95.0
Sp3g25610 Schrenkiella parvula HOM05D003517 ORTHO05D009794 3.6e-96 355.1 196 96.9
Peaxi162Scf00456g00029 Petunia axillaris HOM05D003517 ORTHO05D009794 6.2e-96 354.4 202 95.0
Solyc00g021630.1 Solanum lycopersicum HOM05D003517 ORTHO05D009794 6.2e-96 354.4 202 95.0
Peaxi162Scf00456g00032 Petunia axillaris HOM05D003517 ORTHO05D009794 8.9e-95 350.5 202 94.1
Lj5g0026865 Lotus japonicus HOM05D003517 ORTHO05D009794 2.6e-94 349.0 202 93.1
LjContig00439g0001390 Lotus japonicus HOM05D003517 ORTHO05D009794 2.6e-94 349.0 202 93.1
LjContig00446g0016600 Lotus japonicus HOM05D003517 ORTHO05D009794 2.6e-94 349.0 202 93.1
Nn003s41395 Nelumbo nucifera HOM05D003517 ORTHO05D009794 4.4e-94 348.2 202 93.1
Nn1g09965 Nelumbo nucifera HOM05D003517 ORTHO05D009794 4.4e-94 348.2 202 93.1
Nn1g10124 Nelumbo nucifera HOM05D003517 ORTHO05D009794 4.4e-94 348.2 202 93.1
Glyma.08G301000 Glycine max HOM05D003517 ORTHO05D009794 5.8e-94 347.8 200 93.5
Lalb_Chr00c21g0406031 Lupinus albus HOM05D003517 ORTHO05D009794 2.9e-93 345.5 202 92.1
Lalb_Chr00c39g0409031 Lupinus albus HOM05D003517 ORTHO05D009794 2.9e-93 345.5 202 92.1
Lalb_Chr00c39g0409211 Lupinus albus HOM05D003517 ORTHO05D009794 2.9e-93 345.5 202 92.1
Lalb_Chr00c51g0413121 Lupinus albus HOM05D003517 ORTHO05D009794 2.9e-93 345.5 202 92.1
arahy.Tifrunner.gnm1.ann1.8GMV2Y Arachis hypogaea HOM05D003517 ORTHO05D009794 3.8e-93 345.1 200 93.0
Aqoxy38s018 Aquilegia oxysepala HOM05D003517 ORTHO05D009794 6.4e-93 344.4 202 92.1
Gorai.001G168000 Gossypium raimondii HOM05D003517 ORTHO05D009794 1.6e-91 339.7 202 92.6
Gohir.A03G108600 Gossypium hirsutum HOM05D003517 ORTHO05D009794 7.8e-91 337.4 202 92.1
CSS0025973 Camellia sinensis var. sinensis HOM05D003517 ORTHO05D009794 5.1e-90 334.7 183 97.3
SHI35306 Sapria himalayana HOM05D003517 ORTHO05D009794 2.1e-88 329.3 204 88.7
SHI49089 Sapria himalayana HOM05D003517 ORTHO05D009794 2.1e-88 329.3 204 88.7
HanXRQChr01g0013411 Helianthus annuus HOM05D003517 ORTHO05D009794 4.8e-88 328.2 176 98.9
SHI53309 Sapria himalayana HOM05D003517 ORTHO05D009794 6.2e-88 327.8 204 88.2
CAN.G1.11 Capsicum annuum HOM05D003517 ORTHO05D009794 1.4e-87 326.6 202 88.1
Nitab4.5_0000172g1090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.8e-87 326.2 202 87.6
Nitab4.5_0000172g0300 Nicotiana tabacum HOM05D003517 ORTHO05D009794 2.4e-87 325.9 202 86.6
MBI05_g05356_MAGBIO Magnolia biondii HOM05D003517 ORTHO05D009794 6.9e-87 324.3 196 88.8
Nitab4.5_0003784g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 9.3e-84 313.9 202 85.1
Gohir.A08G086024 Gossypium hirsutum HOM05D003517 ORTHO05D009794 1.2e-78 297.0 202 81.7
LjContig00315g0004708 Lotus japonicus HOM05D003517 ORTHO05D009794 1.5e-78 296.6 181 89.5
Nitab4.5_0010559g0050 Nicotiana tabacum HOM05D003517 ORTHO05D009798 3.2e-76 288.9 202 82.2
arahy.Tifrunner.gnm1.ann1.N584HR Arachis hypogaea HOM05D003517 ORTHO05D009794 4.6e-75 285.0 200 81.0
SabraMtG0003300 Salix brachista HOM05D003517 ORTHO05D009794 2.5e-73 279.3 156 93.6
Nitab4.5_0000172g0410 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.5e-70 270.0 202 78.2
HanXRQChr09g0237761 Helianthus annuus HOM05D003517 ORTHO05D009794 3.8e-69 265.4 140 99.3
CDE02G3221 Ceratophyllum demersum HOM05D003517 ORTHO05D009794 1.1e-68 263.8 152 90.8
Nitab4.5_0003945g0090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.3e-66 256.9 176 82.4
unitig_0.g2040 Utricularia gibba HOM05D003517 ORTHO05D009794 2.3e-66 256.1 147 91.8
CsaV3_UNG208670 Cucumis sativus L. HOM05D003517 ORTHO05D009794 2.9e-61 239.2 130 97.7
RhsimMtG0007100 Rhododendron simsii HOM05D003517 ORTHO05D009794 7.9e-59 231.1 130 96.2
Nitab4.5_0001152g0960 Nicotiana tabacum HOM05D003517 ORTHO05D009794 2.5e-57 226.1 148 81.8
TPR.G40594 Trifolium pratense HOM05D003517 ORTHO05D009794 1.8e-55 219.9 124 94.4
HanXRQChr05g0138851 Helianthus annuus HOM05D003517 ORTHO05D009794 7.7e-54 214.5 117 96.6
Pp3c12_12240 Physcomitrium patens HOM05D003517 ORTHO05D009794 3.2e-52 209.1 184 64.7
Sp5g20260 Schrenkiella parvula HOM05D003517 ORTHO05D009794 2.4e-47 193.0 196 63.3
BraSC159t45725Z Brassica rapa HOM05D003517 ORTHO05D009794 3.8e-45 185.7 103 97.1
Lj2P92T86 Lonicera japonica HOM05D003517 ORTHO05D009794 7.2e-44 181.4 100 93.0
Aa31csc798G10 Aethionema arabicum HOM05D003517 ORTHO05D009794 1.0e-42 177.6 115 84.3
Nitab4.5_0001152g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.3e-37 160.6 184 59.2
Actinidia34878 Actinidia chinensis HOM05D003517 ORTHO05D009794 2.1e-35 153.3 95 92.6
Ca_03783_v3 Cicer arietinum L. HOM05D009973 ORTHO05D009794 1.0e-34 151.0 89 94.4
VMungo0985G0003 Vigna mungo HOM05D003517 ORTHO05D009794 1.4e-34 150.6 88 95.5
Thhalv10029192m.g Eutrema salsugineum HOM05D003517 ORTHO05D009794 2.9e-29 132.9 80 88.8
Nitab4.5_0001127g0280 Nicotiana tabacum HOM05D003517 ORTHO05D009794 6.5e-29 131.7 174 54.0
CiPaw.05G081600 Carya illinoinensis HOM05D003517 ORTHO05D009794 1.0e-26 124.4 93 73.1
Solyc10g045730.1 Solanum lycopersicum HOM05D003517 ORTHO05D009794 8.3e-24 114.8 131 59.5
TPR.G39738 Trifolium pratense HOM05D003517 ORTHO05D009794 5.4e-23 112.1 67 91.0
Nitab4.5_0001152g0550 Nicotiana tabacum HOM05D003517 ORTHO05D009794 2.2e-21 106.7 64 79.7
Solyc11g030930.3 Solanum lycopersicum HOM05D003517 ORTHO05D009794 3.8e-21 105.9 61 88.5
Lsat_1_v5_gn_5_95761 Lactuca sativa HOM05D002069 ORTHO05D009794 1.1e-20 104.4 57 84.2
HanXRQChr05g0138841 Helianthus annuus HOM05D003517 ORTHO05D009794 1.4e-18 97.4 57 94.7
Aqoxy12s041 Aquilegia oxysepala HOM05D003517 ORTHO05D009794 5.2e-18 95.5 71 84.5
SGA_v2.0_scaffold400G50848 Striga asiatica HOM05D003517 ORTHO05D009794 1.7e-16 90.5 64 76.6
Nitab4.5_0001152g0290 Nicotiana tabacum HOM05D003517 ORTHO05D009794 2.4e-15 86.7 63 81.0
SalBow1G3342 Salvia bowleyana HOM05D002965 ORTHO05D010536 5.9e-14 82.0 44 97.7
Psat0s1454g0040 Pisum sativum HOM05D003517 ORTHO05D009794 3.3e-12 76.3 89 60.7
HanXRQChr05g0138831 Helianthus annuus HOM05D003517 ORTHO05D009794 4.3e-12 75.9 37 100.0
HanXRQChr05g0138811 Helianthus annuus HOM05D003517 ORTHO05D009794 3.6e-11 72.8 37 97.3
HanXRQChr05g0138821 Helianthus annuus HOM05D003517 ORTHO05D009794 3.6e-11 72.8 37 97.3
Lj2C1230G62 Lonicera japonica HOM05D014754 ORTHO05D009794 2.9e-08 63.2 40 85.0


User provided reference genes

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