Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr00c0055g0571411 Helianthus annuus HOM05D007924 ORTHO05D010328 2.6e-52 208.4 101 100.0
HanXRQChr09g0250631 Helianthus annuus HOM05D007924 ORTHO05D010328 1.2e-49 199.5 101 97.0
HanXRQMTg0579161 Helianthus annuus HOM05D007924 ORTHO05D010328 2.6e-44 181.8 88 100.0
HanXRQMTg0579521 Helianthus annuus HOM05D007924 ORTHO05D010328 2.6e-44 181.8 88 100.0
DCAR_032428 Daucus carota HOM05D007924 ORTHO05D010328 8.4e-43 176.8 88 96.6
Lj2P1227T93 Lonicera japonica HOM05D007924 ORTHO05D010328 2.1e-41 172.2 88 93.2
Oeu018666.1 Olea europaea HOM05D007924 ORTHO05D010328 2.7e-41 171.8 88 93.2
GSVIVG01000955001 Vitis vinifera HOM05D007924 ORTHO05D010328 2.7e-41 171.8 88 93.2
PGR028G0018 Punica granatum HOM05D007924 ORTHO05D010328 7.9e-41 170.2 88 93.2
PGSC0003DMG400011350 Solanum tuberosum HOM05D007924 ORTHO05D010328 1.0e-40 169.9 88 92.0
SGA_v2.0_scaffold575G53004 Striga asiatica HOM05D007924 ORTHO05D010328 1.3e-40 169.5 88 92.0
Sed0020154 Sechium edule HOM05D007924 ORTHO05D010328 3.9e-40 167.9 88 90.9
CAN.G1180.17 Capsicum annuum HOM05D007924 ORTHO05D010328 6.7e-40 167.2 88 90.9
Nn1g10039 Nelumbo nucifera HOM05D007924 ORTHO05D010328 6.7e-40 167.2 88 90.9
Nn1g10153 Nelumbo nucifera HOM05D007924 ORTHO05D010328 6.7e-40 167.2 88 90.9
Nitab4.5_0003945g0040 Nicotiana tabacum HOM05D007924 ORTHO05D010328 1.1e-39 166.4 88 89.8
RhsimMtG0003200 Rhododendron simsii HOM05D007924 ORTHO05D010328 1.1e-39 166.4 88 89.8
LjContig00315g0007302 Lotus japonicus HOM05D007924 ORTHO05D010328 2.5e-39 165.2 88 89.8
TPR.G7050 Trifolium pratense HOM05D007924 ORTHO05D010328 2.5e-39 165.2 88 89.8
Lalb_Chr00c24g0406701 Lupinus albus HOM05D007924 ORTHO05D010328 4.3e-39 164.5 88 89.8
CSS0018158 Camellia sinensis var. sinensis HOM05D007924 ORTHO05D010328 7.4e-39 163.7 88 88.6
AT2G07707 Arabidopsis thaliana HOM05D007924 ORTHO05D010328 1.6e-38 162.5 88 87.5
ATMG00480 Arabidopsis thaliana HOM05D007924 ORTHO05D010328 1.6e-38 162.5 88 87.5
CARHR282860 Cardamine hirsuta HOM05D007924 ORTHO05D010328 1.6e-38 162.5 88 87.5
Thhalv10029138m.g Eutrema salsugineum HOM05D007924 ORTHO05D010328 3.7e-38 161.4 88 86.4
Nitab4.5_0000172g0710 Nicotiana tabacum HOM05D007924 ORTHO05D010328 3.7e-38 161.4 88 87.5
BraSC48t46292Z Brassica rapa HOM05D007924 ORTHO05D010328 4.8e-38 161.0 88 86.4
BraSC48t46309Z Brassica rapa HOM05D007924 ORTHO05D010328 4.8e-38 161.0 88 86.4
CANSAT16G0013 Cannabis sativa HOM05D007924 ORTHO05D010328 6.3e-38 160.6 88 86.4
RcHm_v2.0_Chr6g0257961 Rosa chinensis HOM05D007924 ORTHO05D010328 6.3e-38 160.6 88 86.4
RcHm_v2.0_MTg0498901 Rosa chinensis HOM05D007924 ORTHO05D010328 6.3e-38 160.6 88 86.4
RcHm_v2.0_MTg0499211 Rosa chinensis HOM05D007924 ORTHO05D010328 6.3e-38 160.6 88 86.4
SHI38116 Sapria himalayana HOM05D007924 ORTHO05D010328 3.1e-37 158.3 88 86.4
Gorai.001G164500 Gossypium raimondii HOM05D007924 ORTHO05D010328 6.9e-37 157.1 88 86.4
Lj3g0001131 Lotus japonicus HOM05D007924 ORTHO05D010328 2.0e-36 155.6 88 86.4
Duzib116G0340 Durio zibethinus HOM05D007924 ORTHO05D010328 2.9e-35 151.8 88 83.0
BolC1t03437H Brassica oleracea HOM05D007924 ORTHO05D010328 1.1e-34 149.8 88 81.8
HanXRQChr15g0468771 Helianthus annuus HOM05D007924 ORTHO05D010328 7.2e-34 147.1 72 100.0
CsaV3_5G016970 Cucumis sativus L. HOM05D007924 ORTHO05D010328 1.3e-32 142.9 88 80.7
CAN.G1001.34 Capsicum annuum HOM05D007924 ORTHO05D010328 1.8e-32 142.5 88 81.8
CsaV3_UNG210380 Cucumis sativus L. HOM05D007924 ORTHO05D010328 1.5e-31 139.4 84 81.0
BolSC28t60326H Brassica oleracea HOM05D007924 ORTHO05D011743 9.7e-31 136.7 83 78.3
BraSC159t45717Z Brassica rapa HOM05D007924 ORTHO05D010328 9.7e-31 136.7 83 78.3
C01p34680 Brassica napus HOM05D007924 ORTHO05D010328 2.2e-27 125.6 83 73.5
Lalb_Chr14g0363841 Lupinus albus HOM05D007924 ORTHO05D010328 2.9e-27 125.2 69 87.0
Nitab4.5_0028251g0010 Nicotiana tabacum HOM05D007924 ORTHO05D010328 4.6e-25 117.9 73 80.8
CsaV3_5G015830 Cucumis sativus L. HOM05D007924 ORTHO05D010328 3.9e-24 114.8 70 80.0
Phvul.011G125800 Phaseolus vulgaris HOM05D007924 ORTHO05D010328 6.7e-24 114.0 62 87.1
BraSC48t46342Z Brassica rapa HOM05D007924 ORTHO05D010328 2.6e-20 102.1 71 70.4
BolSC28t60430H Brassica oleracea HOM05D007924 ORTHO05D010328 1.7e-19 99.4 51 90.2
Ca_03774_v3 Cicer arietinum L. HOM05D007924 ORTHO05D010328 3.8e-19 98.2 56 85.7
Nitab4.5_0002418g0260 Nicotiana tabacum HOM05D007924 ORTHO05D010328 1.2e-17 93.2 85 58.8
Nitab4.5_0000844g0160 Nicotiana tabacum HOM05D007924 ORTHO05D010328 1.6e-17 92.8 56 78.6
SabraMtG0001000 Salix brachista HOM05D007924 ORTHO05D010328 6.7e-16 87.4 50 88.0
SHI38118 Sapria himalayana HOM05D007924 ORTHO05D010328 3.3e-15 85.1 49 79.6
MD02G1208400 Malus domestica HOM05D007924 ORTHO05D010328 7.4e-15 84.0 44 86.4
SHI34938 Sapria himalayana HOM05D007924 ORTHO05D010328 1.3e-14 83.2 74 63.5
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 2.6e-12 75.5 42 88.1
CsaV3_3G039780 Cucumis sativus L. HOM05D000558 ORTHO05D006060 3.5e-12 75.1 49 77.6
Nitab4.5_0000172g1200 Nicotiana tabacum HOM05D007924 ORTHO05D007069 1.1e-10 70.1 47 74.5
Lalb_Chr00c24g0406881 Lupinus albus HOM05D002965 ORTHO05D010536 2.8e-06 55.5 27 88.9


User provided reference genes

Program Settings