Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr00c0055g0571401 Helianthus annuus HOM05D003430 ORTHO05D004809 7.7e-258 893.3 441 100.0
HanXRQMTg0579531 Helianthus annuus HOM05D003430 ORTHO05D004809 4.4e-245 850.9 540 81.7
DCAR_032431 Daucus carota HOM05D003430 ORTHO05D004809 7.5e-229 797.0 441 89.3
Peaxi162Scf00456g00037 Petunia axillaris HOM05D003430 ORTHO05D004809 2.4e-219 765.4 460 83.5
Cfa023013 Carpinus fangiana HOM05D003430 ORTHO05D004809 2.1e-218 762.3 418 89.7
Lalb_Chr00c21g0406111 Lupinus albus HOM05D003430 ORTHO05D004809 9.5e-216 753.4 445 85.6
RcHm_v2.0_MTg0498431 Rosa chinensis HOM05D003430 ORTHO05D004809 5.8e-213 744.2 442 85.3
Ah.10g028080 Amaranthus hybridus HOM05D003430 ORTHO05D004809 5.4e-211 737.6 496 76.0
CANSAT16G0003 Cannabis sativa HOM05D003430 ORTHO05D004809 7.1e-211 737.3 440 84.8
CARHR282710 Cardamine hirsuta HOM05D003430 ORTHO05D004809 2.1e-210 735.7 444 84.2
CARHR288640 Cardamine hirsuta HOM05D003430 ORTHO05D004809 2.1e-210 735.7 444 84.2
ATMG00180 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 7.8e-210 733.8 444 84.0
A04p09460 Brassica napus HOM05D003430 ORTHO05D004809 5.1e-209 731.1 445 83.8
BraSC177t45748Z Brassica rapa HOM05D003430 ORTHO05D004809 1.5e-208 729.6 444 83.8
Solyc00g500241.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 3.4e-205 718.4 600 64.3
HanXRQChr09g0250621 Helianthus annuus HOM05D003430 ORTHO05D004809 2.9e-204 715.3 461 80.7
Aa31csc1081G20 Aethionema arabicum HOM05D003430 ORTHO05D004809 1.4e-198 696.4 475 76.4
Medtr0082s0260 Medicago truncatula HOM05D003430 ORTHO05D004809 3.9e-193 678.3 645 59.4
SGA_v2.0_scaffold245G44667 Striga asiatica HOM05D003430 ORTHO05D004809 5.1e-193 677.9 576 64.4
HanXRQChr11g0335431 Helianthus annuus HOM05D003430 ORTHO05D004809 1.3e-191 673.3 442 80.5
Gorai.001G162300 Gossypium raimondii HOM05D003430 ORTHO05D004809 6.2e-191 671.0 452 76.8
Dinv06724 Davidia involucrata HOM05D003430 ORTHO05D004809 5.3e-190 667.9 541 66.2
ECA039G0023 Erigeron canadensis HOM05D003430 ORTHO05D004809 2.9e-188 662.1 556 65.1
Solyc00g500224.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 4.9e-188 661.4 602 60.6
Solyc00g052430.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 3.0e-185 652.1 361 88.1
TPR.G13784 Trifolium pratense HOM05D003430 ORTHO05D004809 2.2e-180 636.0 380 85.0
LjContig00439g0009782 Lotus japonicus HOM05D003430 ORTHO05D004809 3.9e-177 625.2 447 73.2
Ah.01g011780 Amaranthus hybridus HOM05D003430 ORTHO05D004809 1.2e-173 613.6 486 66.9
Nitab4.5_0003945g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 4.1e-166 588.6 460 67.6
Nitab4.5_0001127g0210 Nicotiana tabacum HOM05D003430 ORTHO05D004809 5.3e-166 588.2 468 67.3
LjContig00446g0005008 Lotus japonicus HOM05D003430 ORTHO05D004809 6.3e-159 564.7 447 68.0
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 9.4e-139 497.7 613 49.3
MBI05_g40995_MAGBIO Magnolia biondii HOM05D003430 ORTHO05D004809 6.1e-138 495.0 443 61.9
Gorai.002G142200 Gossypium raimondii HOM05D003430 ORTHO05D004809 4.8e-127 458.8 384 64.3
Lj2C1222G64 Lonicera japonica HOM05D003430 ORTHO05D004809 1.3e-124 450.7 255 89.8
Sopen00g002720 Solanum pennellii HOM05D003430 ORTHO05D004809 8.9e-121 438.0 255 87.1
Peaxi162Scf00456g00035 Petunia axillaris HOM05D003430 ORTHO05D004809 2.6e-120 436.4 255 87.1
SabraMtG0000400 Salix brachista HOM05D003430 ORTHO05D004809 8.6e-116 421.4 255 83.9
Lalb_Chr00c39g0409071 Lupinus albus HOM05D003430 ORTHO05D004809 8.0e-114 414.8 259 84.2
Lalb_Chr00c39g0409251 Lupinus albus HOM05D003430 ORTHO05D004809 8.0e-114 414.8 259 84.2
Lalb_Chr00c51g0413171 Lupinus albus HOM05D003430 ORTHO05D004809 8.0e-114 414.8 259 84.2
Nn1g10089 Nelumbo nucifera HOM05D003430 ORTHO05D004809 2.3e-113 413.3 242 86.4
Lalb_Chr10g0094601 Lupinus albus HOM05D003430 ORTHO05D004809 3.7e-111 406.0 259 82.6
BolSC28t60411H Brassica oleracea HOM05D003430 ORTHO05D004809 5.4e-110 402.1 259 81.9
Thhalv10002931m.g Eutrema salsugineum HOM05D003430 ORTHO05D004809 2.0e-109 400.2 493 49.9
SalBow1G3892 Salvia bowleyana HOM05D003430 ORTHO05D004809 2.0e-109 400.2 242 85.5
Sopen11g022460 Solanum pennellii HOM05D000004 ORTHO05D000002 3.5e-109 399.4 235 86.4
Gohir.D01G116901 Gossypium hirsutum HOM05D003430 ORTHO05D004809 1.7e-108 397.1 235 81.7
unitig_87.g27925 Utricularia gibba HOM05D003430 ORTHO05D004809 2.3e-108 396.7 255 82.0
CDE02G0363 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 5.0e-108 395.6 255 78.8
Lsat_1_v5_gn_6_109000 Lactuca sativa HOM05D003430 ORTHO05D004809 5.0e-108 395.6 255 81.2
Psat3g040120 Pisum sativum HOM05D003430 ORTHO05D004809 1.1e-107 394.4 246 84.6
AUR62042332 Chenopodium quinoa HOM05D003430 ORTHO05D004809 1.9e-107 393.7 242 83.1
Sc11g0004420 Simmondsia chinensis HOM05D003430 ORTHO05D004809 7.3e-107 391.7 242 83.1
PGSC0003DMG400037371 Solanum tuberosum HOM05D003430 ORTHO05D004809 6.2e-106 388.7 244 82.8
BraSC48t46245Z Brassica rapa HOM05D003430 ORTHO05D004809 1.8e-105 387.1 216 86.1
BraSC54t46373Z Brassica rapa HOM05D003430 ORTHO05D004809 1.8e-105 387.1 216 86.1
Zm00001eb435500 Zea mays HOM05D003430 ORTHO05D004809 6.8e-105 385.2 255 79.2
Zm00001eb436090 Zea mays HOM05D003430 ORTHO05D004809 6.8e-105 385.2 255 79.2
Zm00001eb437350 Zea mays HOM05D003430 ORTHO05D004809 6.8e-105 385.2 255 79.2
Zm00001eb440330 Zea mays HOM05D003430 ORTHO05D004809 6.8e-105 385.2 255 79.2
Zm00001eb440360 Zea mays HOM05D003430 ORTHO05D004809 6.8e-105 385.2 255 79.2
Zm00001eb442170 Zea mays HOM05D003430 ORTHO05D004809 6.8e-105 385.2 255 79.2
SHI42478 Sapria himalayana HOM05D003430 ORTHO05D004809 2.6e-104 383.3 546 45.2
arahy.Tifrunner.gnm1.ann1.41QMJ9 Arachis hypogaea HOM05D003430 ORTHO05D004809 1.3e-103 380.9 259 78.0
arahy.Tifrunner.gnm1.ann1.AJMC4E Arachis hypogaea HOM05D003430 ORTHO05D004809 1.3e-103 380.9 259 78.0
VMungo0044G0002 Vigna mungo HOM05D003430 ORTHO05D004809 2.4e-102 376.7 238 83.6
Hma1.2p1_1286F.1_g273040 Hydrangea macrophylla HOM05D003430 ORTHO05D004809 5.6e-99 365.5 243 79.8
Sc11g0004440 Simmondsia chinensis HOM05D003430 ORTHO05D004809 5.8e-96 355.5 184 90.8
SabraMtG0000300 Salix brachista HOM05D003430 ORTHO05D004809 1.1e-94 351.3 228 76.3
arahy.Tifrunner.gnm1.ann1.13LUN9 Arachis hypogaea HOM05D003430 ORTHO05D004809 5.4e-94 349.0 185 88.6
arahy.Tifrunner.gnm1.ann1.2J3QCS Arachis hypogaea HOM05D003430 ORTHO05D004809 5.4e-94 349.0 185 88.6
arahy.Tifrunner.gnm1.ann1.4C4WEU Arachis hypogaea HOM05D003430 ORTHO05D004809 5.4e-94 349.0 185 88.6
Lalb_Chr00c39g0409061 Lupinus albus HOM05D003430 ORTHO05D004809 1.3e-92 344.4 185 88.1
Lalb_Chr00c39g0409241 Lupinus albus HOM05D003430 ORTHO05D004809 1.3e-92 344.4 185 88.1
Lalb_Chr00c51g0413151 Lupinus albus HOM05D003430 ORTHO05D004809 1.3e-92 344.4 185 88.1
Lj2C1231G44 Lonicera japonica HOM05D003430 ORTHO05D004809 8.6e-92 341.7 238 76.9
arahy.Tifrunner.gnm1.ann1.ABQ8F7 Arachis hypogaea HOM05D003430 ORTHO05D004809 2.5e-91 340.1 238 76.1
arahy.Tifrunner.gnm1.ann1.CY2VCK Arachis hypogaea HOM05D003430 ORTHO05D004809 2.5e-91 340.1 238 76.1
BolSC28t60376H Brassica oleracea HOM05D003430 ORTHO05D004809 1.2e-90 337.8 184 87.0
BraSC77t46628Z Brassica rapa HOM05D003430 ORTHO05D004809 1.6e-90 337.4 198 81.8
Medtr0024s0150 Medicago truncatula HOM05D003430 ORTHO05D004809 2.8e-90 336.7 184 85.3
Sp3g25650 Schrenkiella parvula HOM05D003430 ORTHO05D004809 2.0e-88 330.5 246 73.6
ATR0559G258 Amborella trichopoda HOM05D003430 ORTHO05D004809 2.6e-88 330.1 184 84.8
HanXRQChr11g0335401 Helianthus annuus HOM05D003430 ORTHO05D004809 6.4e-87 325.5 231 77.1
Zm00001eb435490 Zea mays HOM05D003430 ORTHO05D004809 7.1e-86 322.0 193 81.3
Zm00001eb436080 Zea mays HOM05D003430 ORTHO05D004809 7.1e-86 322.0 193 81.3
SHI29634 Sapria himalayana HOM05D003430 ORTHO05D004809 7.8e-85 318.5 255 68.2
Lj2C1222G56 Lonicera japonica HOM05D003430 ORTHO05D004809 4.3e-83 312.8 177 90.4
SHI29635 Sapria himalayana HOM05D003430 ORTHO05D004809 5.6e-83 312.4 170 87.1
Nn2g14911 Nelumbo nucifera HOM05D003430 ORTHO05D004809 2.8e-82 310.1 187 84.0
Lj2C1222T70 Lonicera japonica HOM05D003430 ORTHO05D004809 3.6e-82 309.7 164 88.4
COL.COLO4_04429 Corchorus olitorius HOM05D003430 ORTHO05D004809 6.2e-82 308.9 200 81.0
Medtr0024s0140 Medicago truncatula HOM05D003430 ORTHO05D004809 7.1e-78 295.4 191 81.7
Sp3g25660 Schrenkiella parvula HOM05D003430 ORTHO05D004809 7.9e-77 292.0 184 77.7
Cpa.g.c41010 Carica papaya HOM05D003430 ORTHO05D004809 1.3e-76 291.2 184 77.2
unitig_87.g27923 Utricularia gibba HOM05D003430 ORTHO05D004809 2.3e-76 290.4 164 84.1
arahy.Tifrunner.gnm1.ann1.Y9E1XU Arachis hypogaea HOM05D003430 ORTHO05D004809 5.8e-72 275.8 143 88.1
arahy.Tifrunner.gnm1.ann1.ZQA7LX Arachis hypogaea HOM05D003430 ORTHO05D004809 5.8e-72 275.8 143 88.1
VMungo0044G0003 Vigna mungo HOM05D003430 ORTHO05D004809 3.2e-70 270.0 160 80.6
EL10Ac3g07005 Beta vulgaris HOM05D003430 ORTHO05D004809 3.9e-68 263.1 154 87.7
Nitab4.5_0001152g0350 Nicotiana tabacum HOM05D003430 ORTHO05D004809 8.7e-68 261.9 188 69.7
arahy.Tifrunner.gnm1.ann1.087TPC Arachis hypogaea HOM05D003430 ORTHO05D004809 4.3e-67 259.6 246 63.0
CDE02G3943 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 5.6e-67 259.2 145 84.1
Lj2C1222T53 Lonicera japonica HOM05D003430 ORTHO05D004809 5.8e-64 249.2 124 90.3
Lsat_1_v5_gn_5_16620 Lactuca sativa HOM05D003430 ORTHO05D004809 7.6e-64 248.8 172 77.9
arahy.Tifrunner.gnm1.ann1.0UJ9QK Arachis hypogaea HOM05D003430 ORTHO05D004809 5.5e-62 242.7 207 67.1
Aqoxy23s002 Aquilegia oxysepala HOM05D003430 ORTHO05D004809 5.3e-57 226.1 130 84.6
Nitab4.5_0000172g0240 Nicotiana tabacum HOM05D003430 ORTHO05D004809 5.3e-57 226.1 242 55.4
Pp3c4_28970 Physcomitrium patens HOM05D003430 ORTHO05D004809 8.4e-55 218.8 202 61.4
Pp3c4_28972 Physcomitrium patens HOM05D003430 ORTHO05D004809 8.4e-55 218.8 202 61.4
Lj6g0002337 Lotus japonicus HOM05D003430 ORTHO05D004809 6.7e-52 209.1 143 72.7
Peaxi162Scf00456g00036 Petunia axillaris HOM05D003430 ORTHO05D004809 1.9e-51 207.6 111 88.3
Solyc10g076630.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 9.7e-51 205.3 109 82.6
BolSC28t60410H Brassica oleracea HOM05D003430 ORTHO05D004809 1.9e-46 191.0 108 80.6
Nitab4.5_0000172g1130 Nicotiana tabacum HOM05D003430 ORTHO05D004809 3.6e-45 186.8 181 53.6
RhsimMtG0004400 Rhododendron simsii HOM05D003430 ORTHO05D004809 1.4e-44 184.9 113 84.1
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 2.5e-43 180.6 117 81.2
SHI04802 Sapria himalayana HOM05D003430 ORTHO05D004809 7.4e-43 179.1 174 56.9
COL.COLO4_04428 Corchorus olitorius HOM05D003430 ORTHO05D004809 6.9e-41 172.6 117 78.6
Sabra12G0092700 Salix brachista HOM05D003430 ORTHO05D004809 4.5e-40 169.9 107 81.3
Nitab4.5_0001152g0410 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.3e-39 168.3 106 82.1
Nitab4.5_0000172g0960 Nicotiana tabacum HOM05D003430 ORTHO05D004809 5.5e-38 162.9 158 58.2
SHI50824 Sapria himalayana HOM05D003430 ORTHO05D004809 7.2e-38 162.5 112 77.7
SHI20516 Sapria himalayana HOM05D003430 ORTHO05D004809 2.8e-34 150.6 150 57.3
Solyc11g039360.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.4e-33 148.3 83 85.5
Nitab4.5_0010559g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.0e-32 144.4 83 83.1
Gohir.D01G117000 Gossypium hirsutum HOM05D003430 ORTHO05D004809 4.5e-32 143.3 96 77.1
Nitab4.5_0004256g0030 Nicotiana tabacum HOM05D003430 ORTHO05D004809 4.5e-32 143.3 79 86.1
SHI20518 Sapria himalayana HOM05D003430 ORTHO05D004809 2.9e-31 140.6 131 58.0
BolC1t03462H Brassica oleracea HOM05D003430 ORTHO05D004809 3.8e-31 140.2 93 77.4
CAN.G600.1 Capsicum annuum HOM05D003430 ORTHO05D004809 5.0e-31 139.8 83 80.7
Aqoxy4G00518 Aquilegia oxysepala HOM05D003430 ORTHO05D004809 2.5e-30 137.5 93 77.4
SHI03773 Sapria himalayana HOM05D003430 ORTHO05D004809 3.6e-29 133.7 188 43.1
AT2G07815 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 2.8e-26 124.0 75 85.3
BraSC54t46375Z Brassica rapa HOM05D003430 ORTHO05D004809 2.8e-26 124.0 75 85.3
BraSC77t46627Z Brassica rapa HOM05D003430 ORTHO05D004809 2.8e-26 124.0 75 85.3
BolC1t03461H Brassica oleracea HOM05D003430 ORTHO05D004809 7.0e-25 119.4 130 53.8
Medtr8g091515 Medicago truncatula HOM05D003430 ORTHO05D004809 7.7e-24 115.9 65 89.2
Lalb_Chr21g0308991 Lupinus albus HOM05D002109 ORTHO05D002149 1.9e-22 111.3 66 80.3
Solyc05g025700.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.4e-20 105.1 109 53.2
Nn044s41806 Nelumbo nucifera HOM05D003430 ORTHO05D004809 2.3e-20 104.4 59 89.8
GSVIVG01031933001 Vitis vinifera HOM05D003430 ORTHO05D004809 7.0e-17 92.8 66 68.2
SHI04803 Sapria himalayana HOM05D003430 ORTHO05D004809 2.7e-16 90.9 79 60.8
arahy.Tifrunner.gnm1.ann1.J6HUIG Arachis hypogaea HOM05D003430 ORTHO05D026951 4.5e-16 90.1 58 75.9
Solyc03g013370.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.0e-15 89.0 54 74.1
SHI25675 Sapria himalayana HOM05D003430 ORTHO05D004809 1.7e-15 88.2 125 39.2
SHI32119 Sapria himalayana HOM05D003430 ORTHO05D004809 6.5e-15 86.3 64 67.2
SHI33655 Sapria himalayana HOM05D003430 ORTHO05D004809 1.1e-14 85.5 158 39.2
TPR.G22979 Trifolium pratense HOM05D000681 ORTHO05D007906 5.5e-14 83.2 43 90.7
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 2.7e-13 80.9 52 75.0
Prupe.5G026600 Prunus persica HOM05D003430 ORTHO05D004809 5.2e-12 76.6 68 57.4
SHI33657 Sapria himalayana HOM05D003430 ORTHO05D004809 1.5e-11 75.1 162 31.5
SHI32117 Sapria himalayana HOM05D003430 ORTHO05D004809 2.6e-11 74.3 67 58.2
TPR.G457 Trifolium pratense HOM05D003430 ORTHO05D004809 2.6e-11 74.3 48 81.2
Solyc00g500167.1 Solanum lycopersicum HOM05D001426 ORTHO05D001389 9.8e-11 72.4 36 94.4
SHI20517 Sapria himalayana HOM05D003430 ORTHO05D004809 1.7e-10 71.6 81 53.1
Medtr5g068830 Medicago truncatula HOM05D003430 ORTHO05D004809 2.8e-10 70.9 79 55.7
SGA_v2.0_scaffold178G39492 Striga asiatica HOM05D003430 ORTHO05D004809 3.7e-10 70.5 53 58.5
Ciclev10017542m.g Citrus clementina HOM05D003430 ORTHO05D004809 4.9e-10 70.1 46 76.1
TPR.G24362 Trifolium pratense HOM05D003430 ORTHO05D004809 4.9e-10 70.1 71 62.0
Nitab4.5_0000684g0110 Nicotiana tabacum HOM05D003430 ORTHO05D015169 2.0e-08 64.7 47 66.0
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 2.0e-08 64.7 38 76.3
Mapoly0017s0010 Marchantia polymorpha HOM05D003430 ORTHO05D004809 4.5e-08 63.5 59 59.3
C01p34960 Brassica napus HOM05D003430 ORTHO05D004809 5.9e-08 63.2 167 32.9
Nitab4.5_0000172g1190 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.0e-07 62.4 40 75.0
SalBow1G2589 Salvia bowleyana HOM05D003430 ORTHO05D004809 2.5e-06 57.8 28 89.3
Solyc04g071020.1 Solanum lycopersicum HOM05D003430 ORTHO05D000314 4.3e-06 57.0 48 68.8


User provided reference genes

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