Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_028626 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.3e-180 636.3 325 100.0
HPP92_028624 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.4e-168 596.3 317 97.2
HPP92_000196 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.3e-121 440.3 414 64.0
CSS0018671 Camellia sinensis var. sinensis HOM05D004734 ORTHO05D006019 2.6e-61 240.0 436 37.6
Lj8A131T30 Lonicera japonica HOM05D004734 ORTHO05D006019 1.7e-60 237.3 362 41.4
TAR629G0221 Trochodendron aralioides HOM05D004734 ORTHO05D006019 2.9e-60 236.5 422 37.7
Nn1g07321 Nelumbo nucifera HOM05D004734 ORTHO05D006019 5.4e-59 232.3 421 37.3
Dinv08709 Davidia involucrata HOM05D004734 ORTHO05D006019 7.1e-59 231.9 430 37.4
Hma1.2p1_2840F.1_g329320 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 3.5e-58 229.6 421 37.1
Actinidia09755 Actinidia chinensis HOM05D004734 ORTHO05D006019 2.3e-57 226.9 428 38.8
vmacro12148 Vaccinium macrocarpon HOM05D004734 ORTHO05D006019 5.6e-56 222.2 426 37.1
Aqoxy2G03788 Aquilegia oxysepala HOM05D004734 ORTHO05D006019 1.1e-54 218.0 423 36.4
HPP92_000155 Vanilla planifolia HOM05D004734 ORTHO05D006019 4.0e-54 216.1 188 68.6
PSO017G2150 Papaver somniferum HOM05D004734 ORTHO05D006019 3.4e-53 213.0 420 36.4
MBI16_g26176_MAGBIO Magnolia biondii HOM05D004734 ORTHO05D006019 9.9e-53 211.5 377 38.2
Potri.002G223600 Populus trichocarpa HOM05D004734 ORTHO05D006019 8.4e-52 208.4 418 35.4
Duzib138G1622 Durio zibethinus HOM05D004734 ORTHO05D006019 5.5e-51 205.7 438 35.4
Lsat_1_v5_gn_7_94920 Lactuca sativa HOM05D004734 ORTHO05D006019 5.5e-51 205.7 438 35.6
Peaxi162Scf00977g00315 Petunia axillaris HOM05D004734 ORTHO05D006019 7.1e-51 205.3 381 36.2
Ciclev10014379m.g Citrus clementina HOM05D004734 ORTHO05D006019 4.6e-50 202.6 417 35.3
Cfa014305 Carpinus fangiana HOM05D004734 ORTHO05D006019 2.3e-49 200.3 422 34.4
Atru.chr6.3288 Acer truncatum HOM05D004734 ORTHO05D006019 3.9e-49 199.5 417 34.8
Atru.chr6.3273 Acer truncatum HOM05D004734 ORTHO05D006019 5.1e-49 199.1 417 34.8
DCAR_012916 Daucus carota HOM05D004734 ORTHO05D006019 1.9e-48 197.2 422 33.2
AUR62015114 Chenopodium quinoa HOM05D004734 ORTHO05D006019 4.3e-48 196.1 362 38.4
MD17G1107900 Malus domestica HOM05D004734 ORTHO05D006019 5.6e-48 195.7 418 34.7
FAN09G1456 Fragaria x ananassa HOM05D004734 ORTHO05D006019 7.4e-48 195.3 426 33.8
Sabra02G0171200 Salix brachista HOM05D004734 ORTHO05D006019 9.6e-48 194.9 419 33.9
Cc00_g21460 Coffea canephora HOM05D004734 ORTHO05D006019 1.3e-47 194.5 420 33.6
HanXRQChr16g0508221 Helianthus annuus HOM05D004734 ORTHO05D006019 1.3e-47 194.5 421 33.5
FAN02G4553 Fragaria x ananassa HOM05D004734 ORTHO05D006019 6.2e-47 192.2 426 33.6
Manes.12G058300 Manihot esculenta HOM05D004734 ORTHO05D006019 6.2e-47 192.2 416 36.3
Prupe.3G208500 Prunus persica HOM05D004734 ORTHO05D006019 6.2e-47 192.2 418 34.0
MD09G1116200 Malus domestica HOM05D004734 ORTHO05D006019 8.1e-47 191.8 417 33.1
FAN14G4409 Fragaria x ananassa HOM05D004734 ORTHO05D006019 1.1e-46 191.4 426 33.8
HanXRQChr14g0438421 Helianthus annuus HOM05D004734 ORTHO05D006019 1.8e-46 190.7 421 34.7
TWI75G1245 Tripterygium wilfordii HOM05D004734 ORTHO05D006019 1.8e-46 190.7 417 34.5
COL.COLO4_07254 Corchorus olitorius HOM05D004734 ORTHO05D006019 4.0e-46 189.5 357 37.5
Solyc05g043350.4 Solanum lycopersicum HOM05D004734 ORTHO05D006019 6.9e-46 188.7 430 32.1
RcHm_v2.0_Chr2g0157781 Rosa chinensis HOM05D004734 ORTHO05D006019 1.2e-45 188.0 426 32.9
CANSAT64G0097 Cannabis sativa HOM05D004734 ORTHO05D006019 2.0e-45 187.2 416 32.9
Gorai.001G195000 Gossypium raimondii HOM05D004734 ORTHO05D006019 3.4e-45 186.4 437 33.4
FAN05G4875 Fragaria x ananassa HOM05D004734 ORTHO05D006019 4.5e-45 186.0 438 32.9
Gohir.D07G174400 Gossypium hirsutum HOM05D004734 ORTHO05D006019 5.8e-45 185.7 437 33.2
Nitab4.5_0009060g0010 Nicotiana tabacum HOM05D004734 ORTHO05D006019 7.6e-45 185.3 430 31.6
PGR042G3679 Punica granatum HOM05D004734 ORTHO05D006019 7.6e-45 185.3 416 33.2
CiPaw.04G108800 Carya illinoinensis HOM05D004734 ORTHO05D006019 1.0e-44 184.9 419 32.7
QL01p037797 Quercus lobata HOM05D004734 ORTHO05D006019 1.0e-44 184.9 444 32.7
Nitab4.5_0000006g0360 Nicotiana tabacum HOM05D004734 ORTHO05D006019 1.7e-44 184.1 438 30.8
Glyma.02G266800 Glycine max HOM05D004734 ORTHO05D006019 3.8e-44 183.0 412 32.3
ClCG02G018160 Citrullus lanatus HOM05D004734 ORTHO05D006019 6.5e-44 182.2 416 33.2
CDE07G0136 Ceratophyllum demersum HOM05D004734 ORTHO05D006019 1.9e-43 180.6 419 32.7
Migut.A01159 Erythranthe guttata HOM05D004734 ORTHO05D006019 1.9e-43 180.6 421 33.5
Haze_12752 Corylus avellana HOM05D004734 ORTHO05D006019 5.5e-43 179.1 400 32.8
Sed0026816 Sechium edule HOM05D004734 ORTHO05D006019 1.2e-42 177.9 416 32.9
CAN.G387.3 Capsicum annuum HOM05D004734 ORTHO05D006019 1.6e-42 177.6 430 31.6
SalBow7G0507 Salvia bowleyana HOM05D004734 ORTHO05D006019 1.6e-42 177.6 417 32.6
Glyma.14G050700 Glycine max HOM05D004734 ORTHO05D006019 2.1e-42 177.2 412 32.0
Thhalv10016293m.g Eutrema salsugineum HOM05D004734 ORTHO05D006019 2.7e-42 176.8 439 31.7
THA.LOC104826129 Tarenaya hassleriana HOM05D004734 ORTHO05D006019 6.0e-42 175.6 440 31.8
Carub.0004s1431 Capsella rubella HOM05D004734 ORTHO05D006019 1.0e-41 174.9 437 30.9
Phvul.008G215200 Phaseolus vulgaris HOM05D004734 ORTHO05D006019 1.8e-41 174.1 412 31.8
AUR62017577 Chenopodium quinoa HOM05D004734 ORTHO05D006019 3.0e-41 173.3 417 33.1
Sc21g0001080 Simmondsia chinensis HOM05D004734 ORTHO05D006019 3.9e-41 172.9 418 32.5
MELO3C019721.2 Cucumis melo HOM05D004734 ORTHO05D006019 5.1e-41 172.6 431 32.0
AT2G32900 Arabidopsis thaliana HOM05D004734 ORTHO05D006019 8.7e-41 171.8 419 32.0
VMungo0647G1710 Vigna mungo HOM05D004734 ORTHO05D006019 1.5e-40 171.0 412 31.8
TPR.G6822 Trifolium pratense HOM05D004734 ORTHO05D006019 1.9e-40 170.6 412 31.3
AL4G28410 Arabidopsis lyrata HOM05D004734 ORTHO05D006019 3.3e-40 169.9 419 31.5
CARHR126840 Cardamine hirsuta HOM05D004734 ORTHO05D006019 3.3e-40 169.9 419 31.0
Ca_06067_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 7.4e-40 168.7 415 31.6
GSVIVG01030526001 Vitis vinifera HOM05D004734 ORTHO05D006019 1.3e-39 167.9 415 33.5
Aa31LG5G4570 Aethionema arabicum HOM05D004734 ORTHO05D006019 1.6e-39 167.5 414 31.9
BcaC01g05869 Brassica carinata HOM05D004734 ORTHO05D006019 2.1e-39 167.2 419 31.5
C03p21580 Brassica napus HOM05D004734 ORTHO05D006019 2.1e-39 167.2 419 31.5
BolC3t14542H Brassica oleracea HOM05D004734 ORTHO05D006019 2.1e-39 167.2 419 31.5
Sp4g15270 Schrenkiella parvula HOM05D004734 ORTHO05D006019 4.8e-39 166.0 422 31.0
A03p18530 Brassica napus HOM05D004734 ORTHO05D006019 2.4e-38 163.7 419 31.3
BraA03t11112Z Brassica rapa HOM05D004734 ORTHO05D006019 2.4e-38 163.7 419 31.3
SGA_v2.0_scaffold73G24401 Striga asiatica HOM05D004734 ORTHO05D006019 4.1e-38 162.9 440 29.8
BcaB01g03944 Brassica carinata HOM05D004734 ORTHO05D006019 6.9e-38 162.2 419 31.3
Eucgr.A01088 Eucalyptus grandis HOM05D004734 ORTHO05D006019 2.0e-37 160.6 416 31.2
Lalb_Chr10g0105531 Lupinus albus HOM05D004734 ORTHO05D006019 1.7e-36 157.5 413 29.3
ATR1128G058 Amborella trichopoda HOM05D004734 ORTHO05D006019 3.8e-36 156.4 418 30.6
Atru.chr12.2374 Acer truncatum HOM05D004734 ORTHO05D006019 6.5e-36 155.6 187 47.6
Oeu054514.1 Olea europaea HOM05D004734 ORTHO05D006019 1.4e-35 154.5 423 30.3
C04p16650 Brassica napus HOM05D004734 ORTHO05D006019 1.9e-35 154.1 392 30.6
Hund08442 Selenicereus undatus HOM05D004734 ORTHO05D006019 1.9e-35 154.1 373 33.8
BcaB02g10504 Brassica carinata HOM05D004734 ORTHO05D006019 2.5e-35 153.7 419 30.5
Ah.01g001840 Amaranthus hybridus HOM05D004734 ORTHO05D006019 3.2e-35 153.3 418 30.9
Rhsim06G0169400 Rhododendron simsii HOM05D004734 ORTHO05D006019 7.2e-35 152.1 160 51.9
BolC4t23215H Brassica oleracea HOM05D004734 ORTHO05D006019 1.6e-34 151.0 419 29.1
EL10Ac9g22816 Beta vulgaris HOM05D004734 ORTHO05D006019 3.9e-33 146.4 459 30.3
BraA05t20212Z Brassica rapa HOM05D004734 ORTHO05D006019 2.5e-32 143.7 419 28.9
HPP92_000240 Vanilla planifolia HOM05D004734 ORTHO05D006019 5.7e-32 142.5 87 85.1
arahy.Tifrunner.gnm1.ann1.L0FFGY Arachis hypogaea HOM05D004734 ORTHO05D006019 1.3e-31 141.4 415 28.9
A05p12730 Brassica napus HOM05D004734 ORTHO05D006019 2.2e-31 140.6 419 28.4
Duzib211G0196 Durio zibethinus HOM05D004734 ORTHO05D006019 6.9e-30 135.6 188 43.6
arahy.Tifrunner.gnm1.ann1.LYY30L Arachis hypogaea HOM05D004734 ORTHO05D006019 4.5e-29 132.9 433 27.5
Cpa.g.sc132.37 Carica papaya HOM05D004734 ORTHO05D006019 3.6e-26 123.2 188 41.0
unitig_8.g4608 Utricularia gibba HOM05D004734 ORTHO05D006019 1.0e-25 121.7 180 38.9
Medtr5g084823 Medicago truncatula HOM05D004734 ORTHO05D006019 9.7e-24 115.2 188 38.3
SHI10095 Sapria himalayana HOM05D004734 ORTHO05D006019 6.9e-22 109.0 184 38.6
SEGI_13952 Sequoiadendron giganteum HOM05D004734 ORTHO05D006019 1.5e-21 107.8 421 25.4
PSO675G0915 Papaver somniferum HOM05D004734 ORTHO05D006019 3.2e-19 100.1 312 29.2
TPR.G25656 Trifolium pratense HOM05D004734 ORTHO05D006019 3.2e-19 100.1 332 28.0
Thecc.01G184100 Theobroma cacao HOM05D004734 ORTHO05D006019 1.4e-14 84.7 93 51.6
Dinv39761 Davidia involucrata HOM05D004734 ORTHO05D006019 2.4e-14 84.0 82 57.3
SHI10094 Sapria himalayana HOM05D004734 ORTHO05D006019 1.6e-13 81.3 78 51.3
ECA236G2537 Erigeron canadensis HOM05D004734 ORTHO05D006019 4.5e-13 79.7 282 27.3
Gohir.A07G168100 Gossypium hirsutum HOM05D004734 ORTHO05D006019 4.5e-13 79.7 113 46.0
Sopen05g026560 Solanum pennellii HOM05D004734 ORTHO05D006019 1.7e-12 77.8 84 52.4
Hma1.2p1_0445F.1_g154190 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 2.2e-12 77.4 82 50.0
Hma1.2p1_2840F.1_g329330 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 2.2e-12 77.4 75 53.3
FvH4_6g41900 Fragaria vesca HOM05D004734 ORTHO05D006019 5.0e-12 76.3 79 51.9
PGSC0003DMG400019206 Solanum tuberosum HOM05D004734 ORTHO05D006019 1.9e-11 74.3 84 50.0
Medtr5g084830 Medicago truncatula HOM05D004734 ORTHO05D006019 2.5e-11 73.9 70 55.7
Ca_06065_v3 Cicer arietinum L. HOM05D004734 ORTHO05D001394 4.2e-11 73.2 73 52.1
CsaV3_6G015550 Cucumis sativus L. HOM05D004734 ORTHO05D006019 7.2e-11 72.4 70 55.7
Ca_31316_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 9.4e-11 72.0 70 52.9
Pp3c3_5560 Physcomitrium patens HOM05D004734 ORTHO05D006019 1.2e-10 71.6 195 27.7
LjContig00029g0002265 Lotus japonicus HOM05D004734 ORTHO05D006019 2.1e-10 70.9 70 54.3
Psat2g026760 Pisum sativum HOM05D004734 ORTHO05D006019 6.1e-10 69.3 70 55.7
Zm00001eb114880 Zea mays HOM05D004734 ORTHO05D006019 1.4e-09 68.2 78 46.2
Psat0s1468g0080 Pisum sativum HOM05D004734 ORTHO05D006019 4.0e-09 66.6 70 54.3
Psat0s1468g0040 Pisum sativum HOM05D004734 ORTHO05D006019 6.7e-09 65.9 70 54.3
Psat1g135920 Pisum sativum HOM05D004734 ORTHO05D006019 4.4e-08 63.2 70 50.0
SMO200G0072 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 7.5e-08 62.4 386 22.0
Mapoly0004s0108 Marchantia polymorpha HOM05D004734 ORTHO05D006019 1.7e-07 61.2 226 25.2


User provided reference genes

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