Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_028573 Vanilla planifolia HOM05D004868 ORTHO05D006030 1.4e-86 322.8 153 100.0
HPP92_011336 Vanilla planifolia HOM05D004868 ORTHO05D006030 5.5e-70 267.7 144 88.9
HPP92_016882 Vanilla planifolia HOM05D004868 ORTHO05D006030 4.2e-62 241.5 146 78.1
ATR0618G246 Amborella trichopoda HOM05D004868 ORTHO05D006030 3.1e-57 225.3 146 70.5
Aa31LG5G15350 Aethionema arabicum HOM05D004868 ORTHO05D006030 1.7e-55 219.5 147 69.4
Lj3g0018370 Lotus japonicus HOM05D004868 ORTHO05D006030 2.9e-55 218.8 147 69.4
C07p40470 Brassica napus HOM05D004868 ORTHO05D006030 1.1e-54 216.9 147 69.4
BolC7t44582H Brassica oleracea HOM05D004868 ORTHO05D006030 1.1e-54 216.9 147 69.4
TAR636G1948 Trochodendron aralioides HOM05D004868 ORTHO05D006030 1.1e-54 216.9 147 69.4
Sp2g20350 Schrenkiella parvula HOM05D004868 ORTHO05D006030 1.5e-54 216.5 147 69.4
AT3G05100 Arabidopsis thaliana HOM05D004868 ORTHO05D006030 1.9e-54 216.1 147 68.0
BraA06t26695Z Brassica rapa HOM05D004868 ORTHO05D006030 1.9e-54 216.1 147 69.4
Peaxi162Scf00225g00143 Petunia axillaris HOM05D004868 ORTHO05D006030 1.9e-54 216.1 147 69.4
BcaB04g21374 Brassica carinata HOM05D004868 ORTHO05D006030 2.5e-54 215.7 147 67.3
Carub.0003s0434 Capsella rubella HOM05D004868 ORTHO05D006030 2.5e-54 215.7 147 68.0
CARHR185710 Cardamine hirsuta HOM05D004868 ORTHO05D006030 2.5e-54 215.7 148 67.6
Thhalv10021106m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 2.5e-54 215.7 147 68.0
FAN05G2179 Fragaria x ananassa HOM05D004868 ORTHO05D006030 2.5e-54 215.7 147 70.7
FAN05G5662 Fragaria x ananassa HOM05D004868 ORTHO05D006030 2.5e-54 215.7 147 70.7
AL3G15480 Arabidopsis lyrata HOM05D004868 ORTHO05D006030 3.2e-54 215.3 147 68.0
Prupe.6G337200 Prunus persica HOM05D004868 ORTHO05D006030 3.2e-54 215.3 147 69.4
RcHm_v2.0_Chr3g0452511 Rosa chinensis HOM05D004868 ORTHO05D006030 3.2e-54 215.3 147 70.1
MD04G1217100 Malus domestica HOM05D004868 ORTHO05D006030 4.2e-54 214.9 147 69.4
A05p42480 Brassica napus HOM05D004868 ORTHO05D006030 5.5e-54 214.5 146 68.5
BraA05t23004Z Brassica rapa HOM05D004868 ORTHO05D006030 5.5e-54 214.5 146 68.5
FAN02G0279 Fragaria x ananassa HOM05D004868 ORTHO05D006030 5.5e-54 214.5 147 70.1
FAN09G4706 Fragaria x ananassa HOM05D004868 ORTHO05D006030 5.5e-54 214.5 147 70.1
Lalb_Chr13g0291821 Lupinus albus HOM05D004868 ORTHO05D006030 5.5e-54 214.5 147 68.7
BcaNung04260 Brassica carinata HOM05D004868 ORTHO05D006030 7.2e-54 214.2 147 68.7
C05p62140 Brassica napus HOM05D004868 ORTHO05D006030 9.4e-54 213.8 148 67.6
BolC5t34872H Brassica oleracea HOM05D004868 ORTHO05D006030 9.4e-54 213.8 148 67.6
A03p33990 Brassica napus HOM05D004868 ORTHO05D006030 1.2e-53 213.4 147 68.0
BraA03t12574Z Brassica rapa HOM05D004868 ORTHO05D006030 1.2e-53 213.4 147 68.0
Cc02_g31280 Coffea canephora HOM05D004868 ORTHO05D006030 1.6e-53 213.0 147 68.0
SalBow2G0736 Salvia bowleyana HOM05D004868 ORTHO05D006030 1.6e-53 213.0 147 68.7
EL10Ac4g09208 Beta vulgaris HOM05D004868 ORTHO05D006030 2.1e-53 212.6 147 69.4
Cpa.g.c47757 Carica papaya HOM05D004868 ORTHO05D006030 2.1e-53 212.6 147 68.0
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 2.1e-53 212.6 147 68.0
C03p41370 Brassica napus HOM05D004868 ORTHO05D006030 2.7e-53 212.2 147 67.3
BolC3t16420H Brassica oleracea HOM05D004868 ORTHO05D006030 2.7e-53 212.2 147 67.3
Medtr4g025410 Medicago truncatula HOM05D004868 ORTHO05D006030 2.7e-53 212.2 147 67.3
Sp3g03920 Schrenkiella parvula HOM05D004868 ORTHO05D006030 2.7e-53 212.2 147 67.3
TPR.G7590 Trifolium pratense HOM05D004868 ORTHO05D006030 2.7e-53 212.2 147 68.0
Actinidia33836 Actinidia chinensis HOM05D004868 ORTHO05D006030 3.6e-53 211.8 147 68.7
Aa31LG11G8840 Aethionema arabicum HOM05D004868 ORTHO05D006030 3.6e-53 211.8 147 68.0
AUR62000953 Chenopodium quinoa HOM05D004868 ORTHO05D006030 3.6e-53 211.8 147 68.0
AUR62005015 Chenopodium quinoa HOM05D004868 ORTHO05D006030 3.6e-53 211.8 147 68.0
FvH4_6g03940 Fragaria vesca HOM05D004868 ORTHO05D006030 3.6e-53 211.8 147 69.4
FAN14G3773 Fragaria x ananassa HOM05D004868 ORTHO05D006030 3.6e-53 211.8 147 69.4
MD12G1234100 Malus domestica HOM05D004868 ORTHO05D006030 3.6e-53 211.8 147 68.0
Sopen01g041620 Solanum pennellii HOM05D004868 ORTHO05D006030 3.6e-53 211.8 147 68.0
vmacro05392 Vaccinium macrocarpon HOM05D004868 ORTHO05D006030 3.6e-53 211.8 147 68.7
Nitab4.5_0002361g0200 Nicotiana tabacum HOM05D004868 ORTHO05D006030 4.7e-53 211.5 147 67.3
Nitab4.5_0002840g0160 Nicotiana tabacum HOM05D004868 ORTHO05D006030 4.7e-53 211.5 147 67.3
PSO170G6220 Papaver somniferum HOM05D004868 ORTHO05D006030 4.7e-53 211.5 147 69.4
PSO210G5882 Papaver somniferum HOM05D004868 ORTHO05D006030 4.7e-53 211.5 147 69.4
Rhsim05G0148800 Rhododendron simsii HOM05D004868 ORTHO05D006030 4.7e-53 211.5 147 68.7
BcaC01g04334 Brassica carinata HOM05D004868 ORTHO05D006030 6.1e-53 211.1 147 67.3
MBI18_g14729_MAGBIO Magnolia biondii HOM05D004868 ORTHO05D006030 6.1e-53 211.1 150 66.0
arahy.Tifrunner.gnm1.ann1.VSGL27 Arachis hypogaea HOM05D004868 ORTHO05D006030 8.0e-53 210.7 147 68.0
arahy.Tifrunner.gnm1.ann1.WET4Y7 Arachis hypogaea HOM05D004868 ORTHO05D006030 8.0e-53 210.7 147 68.0
Ca_13816_v3 Cicer arietinum L. HOM05D004868 ORTHO05D006030 8.0e-53 210.7 147 67.3
DCAR_022833 Daucus carota HOM05D004868 ORTHO05D006030 8.0e-53 210.7 147 68.0
Thecc.05G291500 Theobroma cacao HOM05D004868 ORTHO05D006030 8.0e-53 210.7 145 69.0
Hma1.2p1_0332F.1_g127880 Hydrangea macrophylla HOM05D004868 ORTHO05D006030 1.0e-52 210.3 147 68.0
Potri.013G034000 Populus trichocarpa HOM05D004868 ORTHO05D006030 1.0e-52 210.3 147 68.7
TPR.G39359 Trifolium pratense HOM05D004868 ORTHO05D006030 1.0e-52 210.3 147 67.3
Psat7g231080 Pisum sativum HOM05D004868 ORTHO05D006030 1.4e-52 209.9 156 63.5
Solyc01g098040.3 Solanum lycopersicum HOM05D004868 ORTHO05D006030 1.4e-52 209.9 147 67.3
PGSC0003DMG400022466 Solanum tuberosum HOM05D004868 ORTHO05D006030 1.4e-52 209.9 147 67.3
Atru.chr2.656 Acer truncatum HOM05D004868 ORTHO05D006030 1.8e-52 209.5 147 67.3
Carub.0006s2543 Capsella rubella HOM05D004868 ORTHO05D006030 1.8e-52 209.5 148 66.9
CAN.G134.187 Capsicum annuum HOM05D004868 ORTHO05D006030 1.8e-52 209.5 147 66.7
Lj9A672G84 Lonicera japonica HOM05D004868 ORTHO05D006030 1.8e-52 209.5 147 66.0
Hund07000 Selenicereus undatus HOM05D004868 ORTHO05D006030 1.8e-52 209.5 150 67.3
Zm00001eb110980 Zea mays HOM05D004868 ORTHO05D006030 1.8e-52 209.5 152 65.8
Gohir.A11G257000 Gossypium hirsutum HOM05D004868 ORTHO05D006030 2.3e-52 209.1 145 67.6
Os07g0667400 Oryza sativa ssp. japonica HOM05D004868 ORTHO05D006030 2.3e-52 209.1 152 66.4
Phvul.010G080900 Phaseolus vulgaris HOM05D004868 ORTHO05D006030 2.3e-52 209.1 147 67.3
Aqoxy5G00612 Aquilegia oxysepala HOM05D004868 ORTHO05D006030 3.0e-52 208.8 147 66.7
MSTRG.13789 Avicennia marina HOM05D004868 ORTHO05D006030 3.0e-52 208.8 147 66.0
Glyma.01G139000 Glycine max HOM05D004868 ORTHO05D006030 3.0e-52 208.8 147 68.7
Gorai.007G286600 Gossypium raimondii HOM05D004868 ORTHO05D006030 3.0e-52 208.8 145 67.6
VMungo0331G1201 Vigna mungo HOM05D004868 ORTHO05D006030 4.0e-52 208.4 147 67.3
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 5.2e-52 208.0 145 67.6
HanXRQChr05g0161431 Helianthus annuus HOM05D004868 ORTHO05D006030 5.2e-52 208.0 148 67.6
Lalb_Chr12g0208121 Lupinus albus HOM05D004868 ORTHO05D006030 5.2e-52 208.0 147 67.3
Thhalv10004543m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 6.8e-52 207.6 147 66.7
Gohir.D11G266800 Gossypium hirsutum HOM05D004868 ORTHO05D006030 6.8e-52 207.6 145 67.6
Ah.06g192760 Amaranthus hybridus HOM05D004868 ORTHO05D006030 8.8e-52 207.2 147 67.3
CSS0010529 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 8.8e-52 207.2 147 66.7
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 8.8e-52 207.2 152 65.1
Migut.B00327 Erythranthe guttata HOM05D004868 ORTHO05D006030 1.2e-51 206.8 147 67.3
Eucgr.H04401 Eucalyptus grandis HOM05D004868 ORTHO05D006030 1.2e-51 206.8 147 66.0
Glyma.03G028300 Glycine max HOM05D004868 ORTHO05D006030 1.2e-51 206.8 149 67.1
Manes.09G157900 Manihot esculenta HOM05D004868 ORTHO05D006030 1.5e-51 206.5 147 67.3
PGR004G1913 Punica granatum HOM05D004868 ORTHO05D006030 1.5e-51 206.5 145 67.6
GSVIVG01021894001 Vitis vinifera HOM05D004868 ORTHO05D006030 1.5e-51 206.5 147 66.0
Ah.04g160130 Amaranthus hybridus HOM05D004868 ORTHO05D006030 2.0e-51 206.1 147 66.7
CSS0028974 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 2.0e-51 206.1 147 67.3
CSS0039857 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 2.0e-51 206.1 147 67.3
ECA246G2619 Erigeron canadensis HOM05D004868 ORTHO05D006030 2.0e-51 206.1 147 67.3
Sabra13G0033200 Salix brachista HOM05D004868 ORTHO05D006030 2.0e-51 206.1 144 67.4
Potri.005G046300 Populus trichocarpa HOM05D004868 ORTHO05D006030 2.6e-51 205.7 147 66.7
MSTRG.12666 Avicennia marina HOM05D004868 ORTHO05D006030 3.4e-51 205.3 147 66.7
CANSAT54G1013 Cannabis sativa HOM05D004868 ORTHO05D006030 3.4e-51 205.3 145 67.6
BcaNung04261 Brassica carinata HOM05D004868 ORTHO05D006030 4.4e-51 204.9 147 66.7
CSS0000773 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 4.4e-51 204.9 147 66.0
Haze_04309 Corylus avellana HOM05D004868 ORTHO05D006030 4.4e-51 204.9 147 65.3
Lj7C479T1 Lonicera japonica HOM05D004868 ORTHO05D006030 4.4e-51 204.9 149 65.1
Sed0014615 Sechium edule HOM05D004868 ORTHO05D006030 4.4e-51 204.9 147 66.7
TWI36G0026 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 5.7e-51 204.5 147 66.0
Nn4g26018 Nelumbo nucifera HOM05D004868 ORTHO05D006030 7.5e-51 204.1 147 66.0
Duzib177G0825 Durio zibethinus HOM05D004868 ORTHO05D006030 9.8e-51 203.8 145 66.2
SGA_v2.0_scaffold146G36132 Striga asiatica HOM05D004868 ORTHO05D006030 9.8e-51 203.8 148 66.9
Ciclev10001724m.g Citrus clementina HOM05D004868 ORTHO05D006030 1.7e-50 203.0 147 64.6
Dinv02605 Davidia involucrata HOM05D004868 ORTHO05D006030 1.7e-50 203.0 145 65.5
ClCG03G010920 Citrullus lanatus HOM05D004868 ORTHO05D006030 2.2e-50 202.6 147 64.6
Oeu027042.1 Olea europaea HOM05D004868 ORTHO05D006030 2.2e-50 202.6 147 65.3
Oeu012475.1 Olea europaea HOM05D004868 ORTHO05D006030 3.7e-50 201.8 147 66.0
QL03p000170 Quercus lobata HOM05D004868 ORTHO05D006030 3.7e-50 201.8 147 66.0
Cfa006482 Carpinus fangiana HOM05D004868 ORTHO05D006030 4.8e-50 201.4 147 63.9
CsaV3_1G044760 Cucumis sativus L. HOM05D004868 ORTHO05D006030 4.8e-50 201.4 147 65.3
HanXRQChr14g0447091 Helianthus annuus HOM05D004868 ORTHO05D006030 4.8e-50 201.4 148 65.5
TWI12G1223 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 6.3e-50 201.1 147 65.3
MELO3C010076.2 Cucumis melo HOM05D004868 ORTHO05D006030 1.4e-49 199.9 147 64.6
QL03p000506 Quercus lobata HOM05D004868 ORTHO05D006030 1.4e-49 199.9 147 65.3
Dinv02602 Davidia involucrata HOM05D004868 ORTHO05D006030 2.4e-49 199.1 145 65.5
Sabra05G0042300 Salix brachista HOM05D004868 ORTHO05D006030 5.4e-49 198.0 147 63.9
CiPaw.07G009000 Carya illinoinensis HOM05D004868 ORTHO05D006030 7.0e-49 197.6 147 66.0
Lsat_1_v5_gn_9_40320 Lactuca sativa HOM05D004868 ORTHO05D006030 9.1e-49 197.2 148 63.5
Sed0017257 Sechium edule HOM05D004868 ORTHO05D006030 9.1e-49 197.2 147 64.6
unitig_8.g3689 Utricularia gibba HOM05D004868 ORTHO05D006030 2.7e-48 195.7 147 62.6
CiPaw.08G177900 Carya illinoinensis HOM05D004868 ORTHO05D006030 7.7e-48 194.1 147 64.6
SEGI_16580 Sequoiadendron giganteum HOM05D004868 ORTHO05D006030 3.8e-47 191.8 148 64.2
SHI18309 Sapria himalayana HOM05D004868 ORTHO05D006030 4.2e-46 188.3 147 59.9
SMO203G0024 Selaginella moellendorffii HOM05D004868 ORTHO05D006030 9.4e-46 187.2 152 57.9
CDE08G0242 Ceratophyllum demersum HOM05D004868 ORTHO05D006030 4.4e-43 178.3 130 65.4
CDE02G4194 Ceratophyllum demersum HOM05D001090 ORTHO05D002687 1.8e-41 172.9 127 65.4
AagrBONN_evm.TU.Sc2ySwM_344.3690 Anthoceros agrestis HOM05D004868 ORTHO05D006030 1.0e-39 167.2 148 59.5
Pp3c9_1110 Physcomitrium patens HOM05D004868 ORTHO05D006030 1.1e-38 163.7 152 53.3
TAR365G1069 Trochodendron aralioides HOM05D004868 ORTHO05D006030 5.6e-38 161.4 128 61.7
CARHR079420 Cardamine hirsuta HOM05D004868 ORTHO05D006030 2.0e-32 142.9 104 65.4
Sc09g0003690 Simmondsia chinensis HOM05D004868 ORTHO05D006030 1.3e-31 140.2 103 64.1
A06p37760 Brassica napus HOM05D004868 ORTHO05D006030 8.6e-31 137.5 96 66.7
Nn3g21303 Nelumbo nucifera HOM05D004868 ORTHO05D006030 2.5e-30 136.0 100 63.0
BcaC05g29994 Brassica carinata HOM05D004868 ORTHO05D006030 3.3e-30 135.6 144 50.7
BcaB04g19280 Brassica carinata HOM05D004868 ORTHO05D006030 3.7e-18 95.5 68 63.2


User provided reference genes

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