Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_028506 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.9e-31 138.3 89 100.0
HPP92_028576 Vanilla planifolia HOM05D003551 ORTHO05D004869 9.5e-14 80.1 101 64.4
HPP92_027088 Vanilla planifolia HOM05D003551 ORTHO05D004869 9.2e-09 63.5 38 84.2
Potri.008G182900 Populus trichocarpa HOM05D003551 ORTHO05D004869 2.0e-08 62.4 36 88.9
Os04g0630000 Oryza sativa ssp. japonica HOM05D003551 ORTHO05D004869 2.7e-08 62.0 36 86.1
HPP92_011125 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.7e-08 62.0 54 64.8
HPP92_027649 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.5e-08 61.6 37 81.1
Lalb_Chr23g0277731 Lupinus albus HOM05D003551 ORTHO05D004869 4.5e-08 61.2 42 76.2
Zm00001eb069620 Zea mays HOM05D003551 ORTHO05D004869 4.5e-08 61.2 36 83.3
Sabra08G0139300 Salix brachista HOM05D003551 ORTHO05D004869 5.9e-08 60.8 54 64.8
TAR374G0642 Trochodendron aralioides HOM05D003551 ORTHO05D004869 5.9e-08 60.8 38 84.2
CiPaw.06G064600 Carya illinoinensis HOM05D003551 ORTHO05D004869 7.8e-08 60.5 38 81.6
Ca_25128_v3 Cicer arietinum L. HOM05D003551 ORTHO05D004869 1.7e-07 59.3 38 78.9
EL10Ac6g14297 Beta vulgaris HOM05D003551 ORTHO05D004869 2.3e-07 58.9 38 78.9
Nn4g22519 Nelumbo nucifera HOM05D003551 ORTHO05D004869 2.3e-07 58.9 38 81.6
QL05p021165 Quercus lobata HOM05D003551 ORTHO05D004869 2.9e-07 58.5 54 64.8
Haze_12293 Corylus avellana HOM05D003551 ORTHO05D004869 3.9e-07 58.2 36 80.6
Eucgr.H02450 Eucalyptus grandis HOM05D003551 ORTHO05D004869 3.9e-07 58.2 38 76.3
Gohir.A12G268000 Gossypium hirsutum HOM05D003551 ORTHO05D004869 3.9e-07 58.2 54 64.8
Gohir.D12G268400 Gossypium hirsutum HOM05D003551 ORTHO05D004869 3.9e-07 58.2 54 64.8
Gorai.008G288600 Gossypium raimondii HOM05D003551 ORTHO05D004869 3.9e-07 58.2 54 64.8
Medtr3g086350 Medicago truncatula HOM05D003551 ORTHO05D004869 3.9e-07 58.2 38 78.9
vmacro01109 Vaccinium macrocarpon HOM05D003551 ORTHO05D004869 3.9e-07 58.2 38 78.9
Cfa009260 Carpinus fangiana HOM05D003551 ORTHO05D004869 5.0e-07 57.8 36 77.8
Ciclev10030726m.g Citrus clementina HOM05D003551 ORTHO05D004869 5.0e-07 57.8 38 78.9
TPR.G5678 Trifolium pratense HOM05D003551 ORTHO05D004869 5.0e-07 57.8 38 76.3
GSVIVG01000585001 Vitis vinifera HOM05D003551 ORTHO05D004869 5.0e-07 57.8 36 80.6
Atru.chr11.1973 Acer truncatum HOM05D003551 ORTHO05D004869 6.6e-07 57.4 54 61.1
CSS0025446 Camellia sinensis var. sinensis HOM05D003551 ORTHO05D004869 6.6e-07 57.4 38 76.3
Oeu028968.1 Olea europaea HOM05D003551 ORTHO05D004869 6.6e-07 57.4 38 76.3
Sed0023493 Sechium edule HOM05D003551 ORTHO05D004869 6.6e-07 57.4 42 69.0
Cpa.g.sc33.80 Carica papaya HOM05D003551 ORTHO05D004869 8.6e-07 57.0 42 73.8
COL.COLO4_23531 Corchorus olitorius HOM05D003551 ORTHO05D004869 8.6e-07 57.0 54 63.0
Lj1g0001310 Lotus japonicus HOM05D003551 ORTHO05D004869 8.6e-07 57.0 42 69.0
LjContig00312_ERROPOS870357g0004032 Lotus japonicus HOM05D003551 ORTHO05D004869 8.6e-07 57.0 42 69.0
Psat2g160640 Pisum sativum HOM05D003551 ORTHO05D004869 8.6e-07 57.0 36 77.8
Rhsim12G0038300 Rhododendron simsii HOM05D003551 ORTHO05D004869 8.6e-07 57.0 38 76.3
Sc04g0005980 Simmondsia chinensis HOM05D003551 ORTHO05D004869 8.6e-07 57.0 38 78.9
Cc11_g16150 Coffea canephora HOM05D003551 ORTHO05D004869 1.1e-06 56.6 38 76.3
Lj6C816T3 Lonicera japonica HOM05D003551 ORTHO05D004869 1.1e-06 56.6 36 80.6
PSO017G3678 Papaver somniferum HOM05D003551 ORTHO05D004869 1.1e-06 56.6 36 77.8
PSO478G3924 Papaver somniferum HOM05D003551 ORTHO05D004869 1.1e-06 56.6 36 77.8
Thecc.02G267000 Theobroma cacao HOM05D003551 ORTHO05D004869 1.1e-06 56.6 54 63.0
unitig_22.g6420 Utricularia gibba HOM05D003551 ORTHO05D004869 1.1e-06 56.6 38 76.3
HPP92_006576 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.1e-06 56.6 34 85.3
HanXRQChr08g0208471 Helianthus annuus HOM05D003551 ORTHO05D004869 1.5e-06 56.2 36 80.6
Manes.12G019500 Manihot esculenta HOM05D003551 ORTHO05D004869 1.5e-06 56.2 54 61.1
CDE02G2789 Ceratophyllum demersum HOM05D003551 ORTHO05D004869 1.9e-06 55.8 35 77.1
ECA240G1955 Erigeron canadensis HOM05D003551 ORTHO05D004869 1.9e-06 55.8 36 77.8
Glyma.11G244500 Glycine max HOM05D003551 ORTHO05D004869 1.9e-06 55.8 42 73.8
Hma1.2p1_0079F.1_g041260 Hydrangea macrophylla HOM05D003551 ORTHO05D004869 1.9e-06 55.8 42 73.8
Lsat_1_v5_gn_8_153700 Lactuca sativa HOM05D003551 ORTHO05D004869 1.9e-06 55.8 36 77.8
Phvul.001G256500 Phaseolus vulgaris HOM05D003551 ORTHO05D004869 2.5e-06 55.5 42 71.4
Prupe.1G240500 Prunus persica HOM05D003551 ORTHO05D004869 2.5e-06 55.5 36 77.8
ClCG03G002050 Citrullus lanatus HOM05D003551 ORTHO05D004869 3.3e-06 55.1 41 73.2
MELO3C026845.2 Cucumis melo HOM05D003551 ORTHO05D004869 3.3e-06 55.1 41 70.7
Dinv14754 Davidia involucrata HOM05D003551 ORTHO05D004869 3.3e-06 55.1 38 78.9
MD16G1105900 Malus domestica HOM05D003551 ORTHO05D004869 3.3e-06 55.1 36 75.0
TWI36G0896 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 3.3e-06 55.1 36 75.0
HPP92_028371 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.3e-06 55.1 36 80.6
MELO3C022674.2 Cucumis melo HOM05D003551 ORTHO05D004869 4.3e-06 54.7 41 70.7
CsaV3_1G012700 Cucumis sativus L. HOM05D003551 ORTHO05D004869 4.3e-06 54.7 41 70.7
Duzib268G0822 Durio zibethinus HOM05D003551 ORTHO05D004869 4.3e-06 54.7 54 61.1
SalBow2G2049 Salvia bowleyana HOM05D003551 ORTHO05D004869 4.3e-06 54.7 38 73.7
THA.LOC104809236 Tarenaya hassleriana HOM05D003551 ORTHO05D004869 4.3e-06 54.7 54 61.1
arahy.Tifrunner.gnm1.ann1.A5BQBU Arachis hypogaea HOM05D003551 ORTHO05D004869 5.6e-06 54.3 43 67.4
arahy.Tifrunner.gnm1.ann1.MWLQ6N Arachis hypogaea HOM05D003551 ORTHO05D004869 5.6e-06 54.3 43 67.4
VMungo0540G0742 Vigna mungo HOM05D003551 ORTHO05D004869 5.6e-06 54.3 42 69.0
MSTRG.7955 Avicennia marina HOM05D003551 ORTHO05D004869 7.3e-06 53.9 54 57.4
Peaxi162Scf00062g00716 Petunia axillaris HOM05D003551 ORTHO05D004869 7.3e-06 53.9 38 73.7
PGSC0003DMG400004723 Solanum tuberosum HOM05D003551 ORTHO05D004869 7.3e-06 53.9 54 61.1
TWI75G1217 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 7.3e-06 53.9 36 72.2
CAN.G484.3 Capsicum annuum HOM05D003551 ORTHO05D004869 9.5e-06 53.5 54 59.3
Nitab4.5_0001290g0150 Nicotiana tabacum HOM05D003551 ORTHO05D004869 9.5e-06 53.5 54 61.1
Nitab4.5_0004725g0020 Nicotiana tabacum HOM05D003551 ORTHO05D004869 9.5e-06 53.5 54 61.1
Oeu014152.4 Olea europaea HOM05D003551 ORTHO05D004869 9.5e-06 53.5 38 76.3
TWI34G1512 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 9.5e-06 53.5 35 74.3
HPP92_028550 Vanilla planifolia HOM05D003551 ORTHO05D004869 9.5e-06 53.5 34 82.4


User provided reference genes

Program Settings