Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_028384 Vanilla planifolia HOM05D004182 ORTHO05D007321 6.3e-29 130.2 70 100.0
HPP92_028405 Vanilla planifolia HOM05D004182 ORTHO05D007321 6.3e-29 130.2 70 100.0
HPP92_028414 Vanilla planifolia HOM05D004182 ORTHO05D007321 6.3e-29 130.2 70 100.0
HPP92_028420 Vanilla planifolia HOM05D004182 ORTHO05D007321 6.3e-29 130.2 70 100.0
HPP92_028429 Vanilla planifolia HOM05D004182 ORTHO05D007321 6.3e-29 130.2 70 100.0
HPP92_028433 Vanilla planifolia HOM05D004182 ORTHO05D007321 6.3e-29 130.2 70 100.0
Nn031s41606 Nelumbo nucifera HOM05D004182 ORTHO05D007321 2.5e-17 91.7 49 98.0
Nn064s42221 Nelumbo nucifera HOM05D004182 ORTHO05D007321 2.5e-17 91.7 49 98.0
Nn349s46475 Nelumbo nucifera HOM05D004182 ORTHO05D007321 2.5e-17 91.7 49 98.0
Nn403s46571 Nelumbo nucifera HOM05D004182 ORTHO05D007321 2.5e-17 91.7 49 98.0
Nn4g25379 Nelumbo nucifera HOM05D004182 ORTHO05D007321 2.5e-17 91.7 49 98.0
Nn6g32823 Nelumbo nucifera HOM05D004182 ORTHO05D007321 2.1e-16 88.6 79 69.6
Nn8g40575 Nelumbo nucifera HOM05D004182 ORTHO05D007321 3.0e-15 84.7 48 89.6
BcaC04g20782 Brassica carinata HOM05D004182 ORTHO05D007321 3.3e-14 81.3 49 91.8
BolSC29t60499H Brassica oleracea HOM05D004182 ORTHO05D007321 3.3e-14 81.3 49 91.8
BolSC29t60540H Brassica oleracea HOM05D004182 ORTHO05D007321 3.3e-14 81.3 74 71.6
BolSC29t60624H Brassica oleracea HOM05D004182 ORTHO05D007321 3.3e-14 81.3 49 91.8
BolSC35t60684H Brassica oleracea HOM05D004182 ORTHO05D007321 3.3e-14 81.3 49 91.8
BolSC46t60966H Brassica oleracea HOM05D004182 ORTHO05D007321 3.3e-14 81.3 49 91.8
BolSC47t61059H Brassica oleracea HOM05D004182 ORTHO05D007321 3.3e-14 81.3 74 71.6
BolSC49t61134H Brassica oleracea HOM05D004182 ORTHO05D007321 3.3e-14 81.3 49 91.8
BraSC138t45528Z Brassica rapa HOM05D004182 ORTHO05D007321 3.3e-14 81.3 49 91.8
BraSC59t46534Z Brassica rapa HOM05D004182 ORTHO05D007321 3.3e-14 81.3 49 91.8
CARHR282390 Cardamine hirsuta HOM05D004182 ORTHO05D007321 3.3e-14 81.3 49 91.8
CARHR282490 Cardamine hirsuta HOM05D004182 ORTHO05D007321 3.3e-14 81.3 49 91.8
Ca_24280_v3 Cicer arietinum L. HOM05D004182 ORTHO05D007321 4.4e-14 80.9 49 89.8
VMungo0720G0997 Vigna mungo HOM05D004182 ORTHO05D007321 5.7e-14 80.5 49 87.8
VMungo0942G0003 Vigna mungo HOM05D004182 ORTHO05D007321 5.7e-14 80.5 49 87.8
Glyma.09G164000 Glycine max HOM05D004182 ORTHO05D007321 1.3e-13 79.3 49 85.7
Gohir.A12G165450 Gossypium hirsutum HOM05D004182 ORTHO05D007321 1.3e-13 79.3 49 87.8
Nn219s45281 Nelumbo nucifera HOM05D004182 ORTHO05D007321 1.7e-13 79.0 42 97.6
Nn442s46688 Nelumbo nucifera HOM05D004182 ORTHO05D007321 1.7e-13 79.0 42 97.6
Psat0s9163g0080 Pisum sativum HOM05D004182 ORTHO05D007321 2.2e-13 78.6 49 87.8
Gohir.1Z049982 Gossypium hirsutum HOM05D004182 ORTHO05D007321 3.7e-13 77.8 49 87.8
Gohir.1Z051066 Gossypium hirsutum HOM05D004182 ORTHO05D007321 3.7e-13 77.8 49 87.8
Gohir.A04G039255 Gossypium hirsutum HOM05D004182 ORTHO05D007321 3.7e-13 77.8 49 87.8
arahy.Tifrunner.gnm1.ann1.DWP51K Arachis hypogaea HOM05D000963 ORTHO05D007321 4.8e-13 77.4 49 85.7
arahy.Tifrunner.gnm1.ann1.NV4G0I Arachis hypogaea HOM05D004182 ORTHO05D007321 4.8e-13 77.4 49 85.7
arahy.Tifrunner.gnm1.ann1.QIZU11 Arachis hypogaea HOM05D007250 ORTHO05D009162 4.8e-13 77.4 49 85.7
arahy.Tifrunner.gnm1.ann1.TV6F30 Arachis hypogaea HOM05D004182 ORTHO05D007321 4.8e-13 77.4 49 85.7
arahy.Tifrunner.gnm1.ann1.UTH6FS Arachis hypogaea HOM05D004182 ORTHO05D007321 4.8e-13 77.4 49 85.7
Sopen06g015050 Solanum pennellii HOM05D004182 ORTHO05D007321 4.8e-13 77.4 49 87.8
Sopen09g020810 Solanum pennellii HOM05D004182 ORTHO05D007321 4.8e-13 77.4 49 87.8
BraSC58t46455Z Brassica rapa HOM05D004182 ORTHO05D007321 6.3e-13 77.0 49 87.8
EL10Ac7g17372 Beta vulgaris HOM05D004182 ORTHO05D007321 8.2e-13 76.6 49 85.7
EL10As10g23966 Beta vulgaris HOM05D004182 ORTHO05D007321 8.2e-13 76.6 49 85.7
arahy.Tifrunner.gnm1.ann1.73L6LP Arachis hypogaea HOM05D004182 ORTHO05D007321 1.1e-12 76.3 49 83.7
Psat7g033600 Pisum sativum HOM05D004182 ORTHO05D007321 1.1e-12 76.3 49 85.7
Psat5g118800 Pisum sativum HOM05D004182 ORTHO05D007321 2.4e-12 75.1 49 83.7
arahy.Tifrunner.gnm1.ann1.04MME8 Arachis hypogaea HOM05D004182 ORTHO05D007321 3.1e-12 74.7 49 83.7
arahy.Tifrunner.gnm1.ann1.MI7UCB Arachis hypogaea HOM05D004182 ORTHO05D007321 3.1e-12 74.7 49 83.7
Psat0s2011g0080 Pisum sativum HOM05D004182 ORTHO05D007321 4.1e-12 74.3 48 83.3
BraSC179t45780Z Brassica rapa HOM05D004182 ORTHO05D007321 7.0e-12 73.6 45 91.1
Nn070s42382 Nelumbo nucifera HOM05D004182 ORTHO05D007321 9.1e-12 73.2 39 94.9
Sopen10g016590 Solanum pennellii HOM05D004182 ORTHO05D007321 1.2e-11 72.8 49 83.7
EL10Ac8g19701 Beta vulgaris HOM05D004182 ORTHO05D007321 1.6e-11 72.4 70 67.1
Hma1.2p1_1418F.1_g282260 Hydrangea macrophylla HOM05D004182 ORTHO05D007321 1.6e-11 72.4 49 81.6
Lsat_1_v5_gn_0_47640 Lactuca sativa HOM05D004182 ORTHO05D007321 2.0e-11 72.0 49 83.7
PGSC0003DMG400043035 Solanum tuberosum HOM05D004182 ORTHO05D007321 2.6e-11 71.6 58 74.1
Phvul.003G041600 Phaseolus vulgaris HOM05D004182 ORTHO05D007321 1.3e-10 69.3 49 77.6
Psat5g167880 Pisum sativum HOM05D000009 ORTHO05D000008 1.3e-10 69.3 49 79.6
Psat4g168320 Pisum sativum HOM05D004182 ORTHO05D007321 1.7e-10 68.9 69 66.7
Phvul.010G068400 Phaseolus vulgaris HOM05D004182 ORTHO05D007321 2.9e-10 68.2 48 79.2
BolSC29t60554H Brassica oleracea HOM05D004182 ORTHO05D007321 5.0e-10 67.4 50 78.0
BcaC05g26432 Brassica carinata HOM05D004182 ORTHO05D007321 6.5e-10 67.0 48 79.2
CARHR044290 Cardamine hirsuta HOM05D004182 ORTHO05D007321 1.5e-09 65.9 41 87.8
Hma1.2p1_0043F.1_g025830 Hydrangea macrophylla HOM05D004182 ORTHO05D007321 1.9e-09 65.5 49 71.4
Glyma.09G133950 Glycine max HOM05D004182 ORTHO05D007321 2.5e-09 65.1 49 71.4
Sc14g0004760 Simmondsia chinensis HOM05D004182 ORTHO05D007321 2.5e-09 65.1 49 77.6
arahy.Tifrunner.gnm1.ann1.8WTZ4N Arachis hypogaea HOM05D004182 ORTHO05D007321 5.5e-09 63.9 43 81.4
Sopen02g002730 Solanum pennellii HOM05D004182 ORTHO05D007321 5.5e-09 63.9 49 73.5
Nn029s41584 Nelumbo nucifera HOM05D004182 ORTHO05D007321 7.2e-09 63.5 39 87.2
Nn212s45203 Nelumbo nucifera HOM05D004182 ORTHO05D007321 7.2e-09 63.5 39 87.2
Nn264s45947 Nelumbo nucifera HOM05D004182 ORTHO05D007321 7.2e-09 63.5 39 87.2
Nn304s46229 Nelumbo nucifera HOM05D004182 ORTHO05D007321 7.2e-09 63.5 39 87.2
C09p40270 Brassica napus HOM05D004182 ORTHO05D007321 9.4e-09 63.2 49 75.5
Psat3g186560 Pisum sativum HOM05D001387 ORTHO05D001250 1.2e-08 62.8 48 72.9
Glyma.03G084500 Glycine max HOM05D004182 ORTHO05D007321 3.6e-08 61.2 43 79.1
Hma1.2p1_0594F.1_g185812 Hydrangea macrophylla HOM05D004182 ORTHO05D007321 4.7e-08 60.8 37 89.2
Phvul.010G003500 Phaseolus vulgaris HOM05D004182 ORTHO05D007321 4.7e-08 60.8 48 72.9
Sed0007203 Sechium edule HOM05D004182 ORTHO05D007321 4.7e-08 60.8 38 89.5
Sed0018388 Sechium edule HOM05D004182 ORTHO05D007321 4.7e-08 60.8 38 89.5
Sed0018833 Sechium edule HOM05D004182 ORTHO05D007321 4.7e-08 60.8 38 89.5
Sed0022676 Sechium edule HOM05D004182 ORTHO05D007321 4.7e-08 60.8 38 89.5
AL9U11930 Arabidopsis lyrata HOM05D001966 ORTHO05D007227 6.1e-08 60.5 38 89.5
LjContig00318g0013893 Lotus japonicus HOM05D004182 ORTHO05D007321 6.1e-08 60.5 37 89.2
Gohir.D05G169433 Gossypium hirsutum HOM05D004182 ORTHO05D007321 8.0e-08 60.1 49 73.5
Migut.I00342 Erythranthe guttata HOM05D004182 ORTHO05D007321 1.0e-07 59.7 38 86.8
Sc03g0005670 Simmondsia chinensis HOM05D004182 ORTHO05D007321 1.0e-07 59.7 42 78.6
ClCG02G009760 Citrullus lanatus HOM05D001966 ORTHO05D000002 1.4e-07 59.3 37 89.2
arahy.Tifrunner.gnm1.ann1.GMF9U8 Arachis hypogaea HOM05D004182 ORTHO05D007321 6.7e-07 57.0 38 84.2
Gohir.D13G041550 Gossypium hirsutum HOM05D004182 ORTHO05D007321 6.7e-07 57.0 49 67.3
arahy.Tifrunner.gnm1.ann1.S1ZEXT Arachis hypogaea HOM05D004182 ORTHO05D007321 8.8e-07 56.6 37 81.1
EL10As15g24133 Beta vulgaris HOM05D004182 ORTHO05D007321 1.5e-06 55.8 38 81.6
arahy.Tifrunner.gnm1.ann1.096T0J Arachis hypogaea HOM05D004182 ORTHO05D007321 4.4e-06 54.3 47 63.8
arahy.Tifrunner.gnm1.ann1.5LT2YD Arachis hypogaea HOM05D000580 ORTHO05D007321 5.7e-06 53.9 40 75.0
SHI36542 Sapria himalayana HOM05D004182 ORTHO05D007321 5.7e-06 53.9 49 65.3
CAN.G1119.15 Capsicum annuum HOM05D002978 ORTHO05D003339 7.5e-06 53.5 49 63.3
Cpa.g.c43052.1 Carica papaya HOM05D004182 ORTHO05D007321 7.5e-06 53.5 39 79.5
Sc21g0003840 Simmondsia chinensis HOM05D004182 ORTHO05D007321 7.5e-06 53.5 39 79.5
Sopen09g027020 Solanum pennellii HOM05D001966 ORTHO05D011119 9.7e-06 53.1 36 83.3


User provided reference genes

Program Settings