Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_028396 Vanilla planifolia HOM05D001966 ORTHO05D007227 3.3e-86 321.6 159 100.0
HPP92_028404 Vanilla planifolia HOM05D001966 ORTHO05D007227 3.3e-86 321.6 159 100.0
HPP92_028413 Vanilla planifolia HOM05D001966 ORTHO05D007227 3.3e-86 321.6 159 100.0
HPP92_028421 Vanilla planifolia HOM05D001966 ORTHO05D007227 3.3e-86 321.6 159 100.0
HPP92_028428 Vanilla planifolia HOM05D001966 ORTHO05D007227 3.3e-86 321.6 159 100.0
HPP92_028434 Vanilla planifolia HOM05D001966 ORTHO05D007227 3.3e-86 321.6 159 100.0
arahy.Tifrunner.gnm1.ann1.8D90VP Arachis hypogaea HOM05D001966 ORTHO05D007227 6.8e-55 217.6 159 76.7
arahy.Tifrunner.gnm1.ann1.KZKE62 Arachis hypogaea HOM05D001966 ORTHO05D007227 3.2e-52 208.8 181 66.3
arahy.Tifrunner.gnm1.ann1.6ZZ12G Arachis hypogaea HOM05D001966 ORTHO05D007227 2.5e-49 199.1 142 75.4
arahy.Tifrunner.gnm1.ann1.77ZW6W Arachis hypogaea HOM05D001966 ORTHO05D007227 6.0e-43 177.9 142 69.7
arahy.Tifrunner.gnm1.ann1.EGZ6K4 Arachis hypogaea HOM05D001966 ORTHO05D007227 6.0e-43 177.9 142 69.7
Sed0014217 Sechium edule HOM05D001966 ORTHO05D007227 3.9e-42 175.3 160 62.5
Sed0012652 Sechium edule HOM05D001966 ORTHO05D007227 8.6e-42 174.1 160 61.9
C09p24670 Brassica napus HOM05D001966 ORTHO05D007227 1.6e-40 169.9 158 60.1
C09p39340 Brassica napus HOM05D001966 ORTHO05D007227 1.6e-40 169.9 158 60.1
VMungo0720G2248 Vigna mungo HOM05D001966 ORTHO05D007227 1.6e-40 169.9 159 61.6
AL9U11930 Arabidopsis lyrata HOM05D001966 ORTHO05D007227 4.7e-40 168.3 157 59.9
arahy.Tifrunner.gnm1.ann1.WI2XKB Arachis hypogaea HOM05D001966 ORTHO05D007227 1.1e-39 167.2 170 61.2
ClCG02G009760 Citrullus lanatus HOM05D001966 ORTHO05D000002 1.8e-39 166.4 157 61.8
arahy.Tifrunner.gnm1.ann1.I9YN8I Arachis hypogaea HOM05D001966 ORTHO05D007227 3.1e-39 165.6 138 65.2
arahy.Tifrunner.gnm1.ann1.3I0RGA Arachis hypogaea HOM05D001966 ORTHO05D007227 2.6e-38 162.5 170 55.3
Sc05g0004050 Simmondsia chinensis HOM05D001966 ORTHO05D007227 3.4e-38 162.2 157 59.2
arahy.Tifrunner.gnm1.ann1.FN7561 Arachis hypogaea HOM05D001966 ORTHO05D007227 4.4e-38 161.8 145 64.8
VMungo1127G1224 Vigna mungo HOM05D001966 ORTHO05D007227 7.5e-38 161.0 158 59.5
BcaC04g20781 Brassica carinata HOM05D001966 ORTHO05D010449 4.6e-35 151.8 147 58.5
BcaNung07085 Brassica carinata HOM05D001966 ORTHO05D010449 4.6e-35 151.8 147 58.5
LjContig00489g0013211 Lotus japonicus HOM05D001966 ORTHO05D007227 6.0e-35 151.4 143 62.9
Gohir.1Z049882 Gossypium hirsutum HOM05D001966 ORTHO05D007227 1.4e-31 140.2 143 60.8
Gohir.A04G039270 Gossypium hirsutum HOM05D001966 ORTHO05D007227 1.4e-31 140.2 143 60.8
Gohir.A05G323724 Gossypium hirsutum HOM05D001966 ORTHO05D007227 1.4e-31 140.2 143 60.8
Sed0001460 Sechium edule HOM05D001966 ORTHO05D007227 3.1e-31 139.0 159 49.7
HPP92_028385 Vanilla planifolia HOM05D001966 ORTHO05D007227 4.4e-30 135.2 63 100.0
CDE02G0843 Ceratophyllum demersum HOM05D001966 ORTHO05D007227 1.4e-28 130.2 63 95.2
Gohir.D02G016950 Gossypium hirsutum HOM05D001966 ORTHO05D007227 3.5e-27 125.6 160 51.9
RhsimPtG0005300 Rhododendron simsii HOM05D001966 ORTHO05D007227 3.5e-27 125.6 63 92.1
LjContig00319g0014927 Lotus japonicus HOM05D001966 ORTHO05D007227 7.8e-27 124.4 141 58.2
Aqoxy2G01968 Aquilegia oxysepala HOM05D001966 ORTHO05D007227 1.7e-26 123.2 61 91.8
Hma1.2p1_0544F.1_g175783 Hydrangea macrophylla HOM05D001966 ORTHO05D007227 1.7e-26 123.2 63 90.5
Cfa023004 Carpinus fangiana HOM05D001966 ORTHO05D007227 3.0e-26 122.5 63 90.5
Lsat_1_v5_gn_2_20521 Lactuca sativa HOM05D001966 ORTHO05D007227 3.0e-26 122.5 63 88.9
Lsat_1_v5_gn_3_110440 Lactuca sativa HOM05D001966 ORTHO05D007227 3.0e-26 122.5 63 88.9
Lsat_1_v5_gn_4_147680 Lactuca sativa HOM05D001966 ORTHO05D007227 3.0e-26 122.5 63 88.9
Lsat_1_v5_gn_4_147860 Lactuca sativa HOM05D001966 ORTHO05D007227 3.0e-26 122.5 63 88.9
Lsat_1_v5_gn_5_181880 Lactuca sativa HOM05D001966 ORTHO05D007227 3.0e-26 122.5 63 88.9
Lsat_1_v5_gn_9_39281 Lactuca sativa HOM05D001966 ORTHO05D007227 3.0e-26 122.5 63 88.9
BolSC29t60539H Brassica oleracea HOM05D001966 ORTHO05D007227 4.3e-25 118.6 63 87.3
BolSC29t60556H Brassica oleracea HOM05D001966 ORTHO05D007227 4.3e-25 118.6 63 87.3
BolSC35t60713H Brassica oleracea HOM05D001966 ORTHO05D007227 4.3e-25 118.6 63 87.3
BolSC44t60814H Brassica oleracea HOM05D001966 ORTHO05D007227 4.3e-25 118.6 63 87.3
BolSC45t60900H Brassica oleracea HOM05D001966 ORTHO05D007227 4.3e-25 118.6 63 87.3
BolSC45t60918H Brassica oleracea HOM05D001966 ORTHO05D007227 4.3e-25 118.6 63 87.3
BolSC46t60967H Brassica oleracea HOM05D001966 ORTHO05D007227 4.3e-25 118.6 63 87.3
BolSC49t61133H Brassica oleracea HOM05D001966 ORTHO05D007227 4.3e-25 118.6 63 87.3
BraSC103t45419Z Brassica rapa HOM05D001966 ORTHO05D007227 4.3e-25 118.6 63 87.3
BraSC25t45921Z Brassica rapa HOM05D001966 ORTHO05D007227 4.3e-25 118.6 63 87.3
BraSC59t46509Z Brassica rapa HOM05D001966 ORTHO05D007227 4.3e-25 118.6 63 87.3
BraSC59t46540Z Brassica rapa HOM05D001966 ORTHO05D007227 4.3e-25 118.6 63 87.3
Potri.011G074201 Populus trichocarpa HOM05D001966 ORTHO05D007227 4.3e-25 118.6 61 88.5
arahy.Tifrunner.gnm1.ann1.ZHN7AL Arachis hypogaea HOM05D001966 ORTHO05D007227 1.6e-24 116.7 63 87.3
Lsat_1_v5_gn_6_94301 Lactuca sativa HOM05D001966 ORTHO05D007227 1.6e-24 116.7 63 85.7
Sc25g0002010 Simmondsia chinensis HOM05D001966 ORTHO05D007227 1.6e-24 116.7 65 86.2
Gorai.005G020800 Gossypium raimondii HOM05D001966 ORTHO05D007227 2.1e-24 116.3 160 49.4
arahy.Tifrunner.gnm1.ann1.JURL6Q Arachis hypogaea HOM05D001966 ORTHO05D007227 6.2e-24 114.8 63 85.7
EL10As10g23965 Beta vulgaris HOM05D001966 ORTHO05D007227 1.4e-23 113.6 65 84.6
Gorai.006G045900 Gossypium raimondii HOM05D001966 ORTHO05D007227 1.5e-22 110.2 154 44.8
HanXRQChr05g0134861 Helianthus annuus HOM05D001966 ORTHO05D007227 4.4e-22 108.6 58 84.5
ClCG11G009300 Citrullus lanatus HOM05D001966 ORTHO05D007227 7.6e-22 107.8 55 87.3
Phvul.003G067400 Phaseolus vulgaris HOM05D001966 ORTHO05D007227 9.9e-22 107.5 62 79.0
Medtr0002s0250 Medicago truncatula HOM05D001966 ORTHO05D007227 1.7e-21 106.7 91 64.8
Medtr3g035620 Medicago truncatula HOM05D001966 ORTHO05D007227 1.7e-21 106.7 91 64.8
VMungo0464G1535 Vigna mungo HOM05D001966 ORTHO05D007227 2.2e-21 106.3 82 67.1
FvH4_c3g00070 Fragaria vesca HOM05D001966 ORTHO05D007227 6.4e-21 104.8 66 83.3
Glyma.08G276350 Glycine max HOM05D001966 ORTHO05D007227 8.4e-21 104.4 62 74.2
DCAR_001522 Daucus carota HOM05D001966 ORTHO05D007227 1.9e-20 103.2 63 77.8
EL10Ac8g19705 Beta vulgaris HOM05D001966 ORTHO05D007227 5.4e-20 101.7 65 78.5
FAN01G2668 Fragaria x ananassa HOM05D001966 ORTHO05D007227 1.6e-19 100.1 66 80.3
Lsat_1_v5_gn_3_13340 Lactuca sativa HOM05D001966 ORTHO05D007227 3.5e-19 99.0 56 80.4
Phvul.002G203700 Phaseolus vulgaris HOM05D001966 ORTHO05D007227 3.5e-19 99.0 78 73.1
BolSC29t60498H Brassica oleracea HOM05D001966 ORTHO05D007227 4.6e-19 98.6 50 88.0
BolSC35t60683H Brassica oleracea HOM05D001966 ORTHO05D007227 4.6e-19 98.6 50 88.0
BolSC44t60831H Brassica oleracea HOM05D001966 ORTHO05D007227 4.6e-19 98.6 50 88.0
arahy.Tifrunner.gnm1.ann1.F2PHFK Arachis hypogaea HOM05D000890 ORTHO05D000697 1.7e-18 96.7 50 88.0
EL10As6g23662 Beta vulgaris HOM05D001325 ORTHO05D001540 1.7e-18 96.7 52 84.6
Glyma.05G084525 Glycine max HOM05D001966 ORTHO05D007227 6.6e-18 94.7 62 74.2
Gohir.A09G039165 Gossypium hirsutum HOM05D001966 ORTHO05D007227 1.1e-17 94.0 149 42.3
Glyma.09G133875 Glycine max HOM05D001966 ORTHO05D007227 9.6e-17 90.9 61 72.1
Peaxi162Scf00080g00518 Petunia axillaris HOM05D001966 ORTHO05D007227 9.6e-17 90.9 52 78.8
SHI36539 Sapria himalayana HOM05D001966 ORTHO05D007227 1.1e-15 87.4 44 90.9
ECA247G0757 Erigeron canadensis HOM05D000006 ORTHO05D000001 5.3e-15 85.1 63 65.1
SHI36394 Sapria himalayana HOM05D001966 ORTHO05D007227 1.2e-14 84.0 44 86.4
arahy.Tifrunner.gnm1.ann1.UQV5ZS Arachis hypogaea HOM05D001966 ORTHO05D007227 4.4e-14 82.0 39 97.4
arahy.Tifrunner.gnm1.ann1.Z8IK0I Arachis hypogaea HOM05D001966 ORTHO05D007227 4.4e-14 82.0 39 97.4
Migut.B00950 Erythranthe guttata HOM05D001966 ORTHO05D007227 4.4e-14 82.0 39 97.4
Sopen06g012240 Solanum pennellii HOM05D000014 ORTHO05D000016 4.4e-14 82.0 39 97.4
BraSC58t46466Z Brassica rapa HOM05D001966 ORTHO05D007227 3.8e-13 79.0 39 94.9
BcaNung01515 Brassica carinata HOM05D001966 ORTHO05D010449 4.9e-13 78.6 38 94.7
Peaxi162Scf00383g00065 Petunia axillaris HOM05D001966 ORTHO05D007227 1.4e-12 77.0 39 92.3
arahy.Tifrunner.gnm1.ann1.Q8ISGW Arachis hypogaea HOM05D001966 ORTHO05D007227 2.4e-12 76.3 47 74.5
BcaC04g22012 Brassica carinata HOM05D001966 ORTHO05D007227 2.4e-12 76.3 39 92.3
FAN13G0121 Fragaria x ananassa HOM05D001966 ORTHO05D007227 2.4e-12 76.3 65 66.2
arahy.Tifrunner.gnm1.ann1.HASF1T Arachis hypogaea HOM05D001966 ORTHO05D007227 1.2e-11 73.9 39 89.7
MD15G1346300 Malus domestica HOM05D001966 ORTHO05D007227 1.6e-11 73.6 39 92.3
Sed0008904 Sechium edule HOM05D001966 ORTHO05D007227 2.3e-10 69.7 49 63.3
arahy.Tifrunner.gnm1.ann1.N1DH3R Arachis hypogaea HOM05D001966 ORTHO05D007227 3.9e-10 68.9 58 60.3
Hma1.2p1_0544F.1_g175786 Hydrangea macrophylla HOM05D001966 ORTHO05D007227 1.9e-09 66.6 33 90.9
Gohir.D02G151976 Gossypium hirsutum HOM05D001966 ORTHO05D010449 7.3e-09 64.7 116 44.0
Oeu022559.1 Olea europaea HOM05D001966 ORTHO05D011119 1.6e-08 63.5 93 49.5
arahy.Tifrunner.gnm1.ann1.EF1F4B Arachis hypogaea HOM05D000963 ORTHO05D010073 6.2e-08 61.6 86 51.2
EL10Ac8g19704 Beta vulgaris HOM05D001966 ORTHO05D007227 6.2e-08 61.6 28 92.9
Gohir.D09G040060 Gossypium hirsutum HOM05D001966 ORTHO05D007227 4.0e-07 58.9 59 55.9
ClCG04G004710 Citrullus lanatus HOM05D001966 ORTHO05D007429 5.8e-06 55.1 110 36.4
MELO3C027875.2 Cucumis melo HOM05D001966 ORTHO05D007227 5.8e-06 55.1 33 72.7
Nitab4.5_0003065g0030 Nicotiana tabacum HOM05D000216 ORTHO05D000634 7.6e-06 54.7 24 91.7
CAN.G1441.4 Capsicum annuum HOM05D001966 ORTHO05D007227 9.9e-06 54.3 40 72.5


User provided reference genes

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