Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_028229 Vanilla planifolia HOM05D006218 ORTHO05D007338 7.4e-46 186.8 92 100.0
HPP92_001390 Vanilla planifolia HOM05D006218 ORTHO05D007338 7.7e-43 176.8 92 92.4
Duzib093G0304 Durio zibethinus HOM05D006218 ORTHO05D007338 1.7e-26 122.5 92 66.3
Duzib041G0398 Durio zibethinus HOM05D006218 ORTHO05D007338 1.9e-25 119.0 92 60.9
Thecc.08G062100 Theobroma cacao HOM05D006218 ORTHO05D007338 1.9e-25 119.0 92 62.0
QL02p015030 Quercus lobata HOM05D006218 ORTHO05D007338 2.5e-25 118.6 91 60.4
QL02p015096 Quercus lobata HOM05D006218 ORTHO05D007338 5.5e-25 117.5 91 60.4
Gorai.009G186600 Gossypium raimondii HOM05D006218 ORTHO05D007338 6.1e-24 114.0 92 59.8
PGR083G1452 Punica granatum HOM05D006218 ORTHO05D007338 6.1e-24 114.0 92 56.5
Gohir.D05G181600 Gossypium hirsutum HOM05D006218 ORTHO05D007338 8.0e-24 113.6 92 59.8
EL10Ac4g09913 Beta vulgaris HOM05D006218 ORTHO05D007338 1.4e-23 112.8 92 57.6
Hma1.2p1_0060F.1_g032840 Hydrangea macrophylla HOM05D006218 ORTHO05D007338 1.4e-23 112.8 92 58.7
GSVIVG01013390001 Vitis vinifera HOM05D006218 ORTHO05D007338 1.4e-23 112.8 92 59.8
Prupe.5G009500 Prunus persica HOM05D006218 ORTHO05D007338 1.8e-23 112.5 92 59.8
MD16G1284000 Malus domestica HOM05D006218 ORTHO05D007338 5.2e-23 110.9 92 59.8
AUR62000761 Chenopodium quinoa HOM05D006218 ORTHO05D007338 1.2e-22 109.8 92 56.5
SHI24507 Sapria himalayana HOM05D006218 ORTHO05D007338 3.4e-22 108.2 92 55.4
Ah.04g161150 Amaranthus hybridus HOM05D006218 ORTHO05D007338 5.7e-22 107.5 92 55.4
CiPaw.08G075100 Carya illinoinensis HOM05D006218 ORTHO05D007338 7.5e-22 107.1 92 55.4
Rhsim10G0062900 Rhododendron simsii HOM05D006218 ORTHO05D007338 2.8e-21 105.1 92 55.4
Dinv31962 Davidia involucrata HOM05D006218 ORTHO05D007338 3.7e-21 104.8 92 56.5
TWI39G0099 Tripterygium wilfordii HOM05D006218 ORTHO05D007338 1.1e-20 103.2 92 54.3
RcHm_v2.0_Chr6g0271871 Rosa chinensis HOM05D006218 ORTHO05D007338 1.4e-20 102.8 92 55.4
Cfa014110 Carpinus fangiana HOM05D006218 ORTHO05D007338 2.4e-20 102.1 80 58.8
Ciclev10000757m.g Citrus clementina HOM05D006218 ORTHO05D007338 2.4e-20 102.1 92 54.3
Rhsim10G0066100 Rhododendron simsii HOM05D006218 ORTHO05D007338 3.1e-20 101.7 92 54.3
CANSAT80G1826 Cannabis sativa HOM05D006218 ORTHO05D007338 7.0e-20 100.5 92 54.3
Thhalv10003177m.g Eutrema salsugineum HOM05D006218 ORTHO05D007338 7.0e-20 100.5 84 57.1
RcHm_v2.0_Chr7g0215761 Rosa chinensis HOM05D006218 ORTHO05D007338 7.0e-20 100.5 92 55.4
CSS0036772 Camellia sinensis var. sinensis HOM05D006218 ORTHO05D007338 2.7e-19 98.6 92 53.3
CSS0043525 Camellia sinensis var. sinensis HOM05D006218 ORTHO05D007338 2.7e-19 98.6 92 53.3
Lsat_1_v5_gn_2_69281 Lactuca sativa HOM05D006218 ORTHO05D007338 2.2e-18 95.5 92 51.1
Aa31LG9G12480 Aethionema arabicum HOM05D006218 ORTHO05D007338 3.8e-18 94.7 76 60.5
Medtr2g100200 Medicago truncatula HOM05D006218 ORTHO05D007338 3.8e-18 94.7 92 52.2
TPR.G6568 Trifolium pratense HOM05D006218 ORTHO05D007338 3.8e-18 94.7 92 52.2
CsaV3_4G037400 Cucumis sativus L. HOM05D006218 ORTHO05D007338 6.5e-18 94.0 92 52.2
MELO3C017038.2 Cucumis melo HOM05D006218 ORTHO05D007338 1.5e-17 92.8 92 51.1
Atru.BG.229.p Acer truncatum HOM05D006218 ORTHO05D007338 4.2e-17 91.3 91 52.7
Cc00_g16990 Coffea canephora HOM05D006218 ORTHO05D007338 5.5e-17 90.9 92 48.9
Sed0014170 Sechium edule HOM05D006218 ORTHO05D007338 3.6e-16 88.2 92 47.8
AL8G16360 Arabidopsis lyrata HOM05D006218 ORTHO05D007338 6.1e-16 87.4 75 57.3
ATR0807G041 Amborella trichopoda HOM05D006218 ORTHO05D007338 2.3e-15 85.5 77 53.2
COL.COLO4_19322 Corchorus olitorius HOM05D006218 ORTHO05D007338 3.0e-15 85.1 92 47.8
FvH4_5g24880 Fragaria vesca HOM05D006218 ORTHO05D007338 8.8e-15 83.6 79 53.2
Gohir.A05G178200 Gossypium hirsutum HOM05D006218 ORTHO05D007338 1.2e-14 83.2 71 54.9
Carub.0008s0482 Capsella rubella HOM05D006218 ORTHO05D007338 5.7e-14 80.9 70 57.1
A06p47680 Brassica napus HOM05D006218 ORTHO05D007338 9.8e-14 80.1 64 60.9
ClCG11G018820 Citrullus lanatus HOM05D006218 ORTHO05D007338 1.3e-13 79.7 85 48.2
Sopen02g018380 Solanum pennellii HOM05D006218 ORTHO05D007338 2.2e-13 79.0 68 55.9
FvH4_5g25350 Fragaria vesca HOM05D006218 ORTHO05D007338 1.4e-12 76.3 71 53.5
PGSC0003DMG400021154 Solanum tuberosum HOM05D006218 ORTHO05D007338 1.8e-12 75.9 64 56.2
arahy.Tifrunner.gnm1.ann1.9489MQ Arachis hypogaea HOM05D006218 ORTHO05D007338 4.1e-12 74.7 69 53.6
FAN18G0123 Fragaria x ananassa HOM05D006218 ORTHO05D007338 5.4e-12 74.3 71 52.1
RcHm_v2.0_Chr7g0219831 Rosa chinensis HOM05D006218 ORTHO05D007338 7.0e-12 73.9 80 50.0
Lalb_Chr03g0040821 Lupinus albus HOM05D006218 ORTHO05D007338 2.0e-11 72.4 63 54.0
BcaC06g31676 Brassica carinata HOM05D006218 ORTHO05D007338 7.8e-11 70.5 57 57.9
BraA06t27636Z Brassica rapa HOM05D006218 ORTHO05D007338 7.8e-11 70.5 60 58.3
Manes.01G131700 Manihot esculenta HOM05D006218 ORTHO05D007338 7.8e-11 70.5 57 56.1
Sc16g0011970 Simmondsia chinensis HOM05D006218 ORTHO05D007338 1.0e-10 70.1 47 66.0
Eucgr.F01783 Eucalyptus grandis HOM05D006218 ORTHO05D007338 1.3e-10 69.7 58 53.4
CAN.G1202.7 Capsicum annuum HOM05D006218 ORTHO05D007338 2.3e-10 68.9 57 56.1
BcaC06g34625 Brassica carinata HOM05D006218 ORTHO05D007338 3.8e-10 68.2 54 59.3
SalBow6G0752 Salvia bowleyana HOM05D006218 ORTHO05D007338 3.8e-10 68.2 56 53.6
THA.LOC104801948 Tarenaya hassleriana HOM05D006218 ORTHO05D007338 6.6e-10 67.4 47 61.7
CDE02G2496 Ceratophyllum demersum HOM05D006218 ORTHO05D007338 8.6e-10 67.0 47 59.6
AT5G43820 Arabidopsis thaliana HOM05D006218 ORTHO05D007338 2.5e-09 65.5 46 63.0
CARHR179660 Cardamine hirsuta HOM05D006218 ORTHO05D007338 2.5e-09 65.5 46 60.9
BolC7t43164H Brassica oleracea HOM05D006218 ORTHO05D007338 4.3e-09 64.7 55 56.4
DCAR_006421 Daucus carota HOM05D006218 ORTHO05D007338 7.3e-09 63.9 84 44.0
Potri.005G247200 Populus trichocarpa HOM05D006218 ORTHO05D007338 9.5e-09 63.5 54 55.6
Nitab4.5_0003027g0060 Nicotiana tabacum HOM05D006218 ORTHO05D007338 1.6e-08 62.8 41 70.7
SEGI_33548 Sequoiadendron giganteum HOM05D006218 ORTHO05D007338 1.6e-08 62.8 78 37.2
Rhsim07G0256800 Rhododendron simsii HOM05D006218 ORTHO05D007338 3.6e-08 61.6 43 65.1
Glyma.15G113600 Glycine max HOM05D006218 ORTHO05D007338 8.0e-08 60.5 47 55.3
Ca_01194_v3 Cicer arietinum L. HOM05D006218 ORTHO05D007338 1.4e-07 59.7 47 55.3
Psat5g293680 Pisum sativum HOM05D006218 ORTHO05D007338 1.4e-07 59.7 55 50.9
C07p26360 Brassica napus HOM05D006218 ORTHO05D007338 3.0e-07 58.5 50 56.0
VMungo1080G0052 Vigna mungo HOM05D006218 ORTHO05D007338 3.0e-07 58.5 58 53.4
Rhsim10G0063100 Rhododendron simsii HOM05D006218 ORTHO05D007338 5.2e-07 57.8 43 58.1
RcHm_v2.0_Chr6g0271981 Rosa chinensis HOM05D006218 ORTHO05D007338 6.8e-07 57.4 47 55.3
Phvul.002G162200 Phaseolus vulgaris HOM05D006218 ORTHO05D007338 1.5e-06 56.2 43 55.8
ECA247G3408 Erigeron canadensis HOM05D006218 ORTHO05D007338 2.0e-06 55.8 60 46.7
VMungo0251G2195 Vigna mungo HOM05D006218 ORTHO05D007338 3.4e-06 55.1 57 49.1
Nn5g30994 Nelumbo nucifera HOM05D006218 ORTHO05D007338 7.5e-06 53.9 32 71.9
Sabra05G0191200 Salix brachista HOM05D006218 ORTHO05D007338 9.8e-06 53.5 54 51.9


User provided reference genes

Program Settings