Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_028201 Vanilla planifolia HOM05D003739 ORTHO05D003996 0.0e+00 1875.1 975 100.0
HPP92_008918 Vanilla planifolia HOM05D003739 ORTHO05D003996 0.0e+00 1392.5 893 84.2
TAR628G0054 Trochodendron aralioides HOM05D003739 ORTHO05D003996 1.6e-37 162.5 268 44.8
Nn4g24182 Nelumbo nucifera HOM05D003739 ORTHO05D003996 2.7e-37 161.8 292 42.5
Ciclev10027900m.g Citrus clementina HOM05D003739 ORTHO05D003996 7.4e-35 153.7 425 33.2
CDE06G1699 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 1.3e-34 152.9 272 40.1
CANSAT54G2857 Cannabis sativa HOM05D003739 ORTHO05D003996 1.6e-34 152.5 235 43.8
QL11p044151 Quercus lobata HOM05D003739 ORTHO05D003996 2.8e-34 151.8 268 41.0
MSTRG.9105 Avicennia marina HOM05D003739 ORTHO05D003996 6.2e-34 150.6 575 29.2
CiPaw.06G133400 Carya illinoinensis HOM05D003739 ORTHO05D003996 4.5e-32 144.4 294 38.1
TWI79G1707 Tripterygium wilfordii HOM05D003739 ORTHO05D003996 7.6e-32 143.7 250 39.2
Lalb_Chr11g0068001 Lupinus albus HOM05D003739 ORTHO05D003996 1.3e-31 142.9 249 41.4
CiPaw.10G121500 Carya illinoinensis HOM05D003739 ORTHO05D003996 2.2e-31 142.1 252 40.5
arahy.Tifrunner.gnm1.ann1.H3NIN5 Arachis hypogaea HOM05D003739 ORTHO05D003996 2.9e-31 141.7 255 37.3
CANSAT11G0250 Cannabis sativa HOM05D003739 ORTHO05D003996 3.8e-31 141.4 270 38.9
Oeu005537.3 Olea europaea HOM05D003739 ORTHO05D003996 8.4e-31 140.2 297 38.0
PSO339G5323 Papaver somniferum HOM05D003739 ORTHO05D003996 1.1e-30 139.8 335 34.6
CSS0038123 Camellia sinensis var. sinensis HOM05D003739 ORTHO05D003996 1.4e-30 139.4 295 35.9
Cc09_g05210 Coffea canephora HOM05D003739 ORTHO05D003996 1.4e-30 139.4 314 34.4
GSVIVG01023816001 Vitis vinifera HOM05D003739 ORTHO05D003996 1.9e-30 139.0 262 40.8
Thecc.08G060300 Theobroma cacao HOM05D003739 ORTHO05D003996 9.3e-30 136.7 263 38.4
Nitab4.5_0010401g0020 Nicotiana tabacum HOM05D003739 ORTHO05D003996 1.2e-29 136.3 214 41.6
Sopen02g026250 Solanum pennellii HOM05D003739 ORTHO05D003996 2.7e-29 135.2 240 39.2
PSO063G1830 Papaver somniferum HOM05D003739 ORTHO05D003996 3.5e-29 134.8 291 35.7
Lsat_1_v5_gn_5_112881 Lactuca sativa HOM05D003739 ORTHO05D003996 4.6e-29 134.4 576 26.0
VMungo1215G1752 Vigna mungo HOM05D003739 ORTHO05D003996 4.6e-29 134.4 222 40.5
Gohir.D09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 1.0e-28 133.3 238 39.5
Gorai.006G107300 Gossypium raimondii HOM05D003739 ORTHO05D003996 1.0e-28 133.3 221 40.7
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 1.3e-28 132.9 278 37.4
Sed0001527 Sechium edule HOM05D003739 ORTHO05D003996 1.3e-28 132.9 396 31.3
CsaV3_5G020720 Cucumis sativus L. HOM05D003739 ORTHO05D003996 2.3e-28 132.1 232 37.9
PSO675G5166 Papaver somniferum HOM05D003739 ORTHO05D003996 2.3e-28 132.1 327 33.6
Migut.F00900 Erythranthe guttata HOM05D003739 ORTHO05D003996 3.0e-28 131.7 524 28.2
Aqoxy2G03991 Aquilegia oxysepala HOM05D003739 ORTHO05D003996 3.9e-28 131.3 347 32.6
unitig_46.g18632 Utricularia gibba HOM05D003739 ORTHO05D003996 3.9e-28 131.3 247 37.7
HPP92_008919 Vanilla planifolia HOM05D003739 ORTHO05D003996 5.1e-28 131.0 72 97.2
CAN.G809.70 Capsicum annuum HOM05D003739 ORTHO05D003996 8.7e-28 130.2 277 37.2
LjContig00222g0016564 Lotus japonicus HOM05D003739 ORTHO05D003996 1.5e-27 129.4 232 38.8
Duzib187G1144 Durio zibethinus HOM05D003739 ORTHO05D003996 1.9e-27 129.0 282 35.5
Potri.010G019600 Populus trichocarpa HOM05D003739 ORTHO05D003996 1.9e-27 129.0 315 34.0
PGSC0003DMG402017733 Solanum tuberosum HOM05D003739 ORTHO05D003996 1.9e-27 129.0 283 36.0
PSO541G6540 Papaver somniferum HOM05D003739 ORTHO05D003996 2.5e-27 128.6 287 34.1
Phvul.002G039700 Phaseolus vulgaris HOM05D003739 ORTHO05D003996 2.5e-27 128.6 251 37.8
Atru.chr12.1298 Acer truncatum HOM05D003739 ORTHO05D003996 4.3e-27 127.9 279 37.6
RcHm_v2.0_Chr5g0054461 Rosa chinensis HOM05D003739 ORTHO05D003996 4.3e-27 127.9 270 37.0
Glyma.01G228200 Glycine max HOM05D003739 ORTHO05D003996 1.6e-26 125.9 297 35.0
MBI16_g35489_MAGBIO Magnolia biondii HOM05D033968 ORTHO05D003996 1.6e-26 125.9 316 36.4
Prupe.8G091800 Prunus persica HOM05D003739 ORTHO05D003996 2.8e-26 125.2 281 39.5
Hund09717 Selenicereus undatus HOM05D003739 ORTHO05D003996 2.8e-26 125.2 260 39.2
Manes.11G084700 Manihot esculenta HOM05D003739 ORTHO05D003996 3.7e-26 124.8 227 38.8
Peaxi162Scf00048g01417 Petunia axillaris HOM05D003739 ORTHO05D003996 3.7e-26 124.8 245 38.4
Sed0009728 Sechium edule HOM05D003739 ORTHO05D003996 3.7e-26 124.8 266 33.5
Eucgr.A01623 Eucalyptus grandis HOM05D003739 ORTHO05D003996 8.2e-26 123.6 221 39.4
Medtr8g091830 Medicago truncatula HOM05D003739 ORTHO05D003996 8.2e-26 123.6 241 40.7
SGA_v2.0_scaffold62G21539 Striga asiatica HOM05D003739 ORTHO05D003996 8.2e-26 123.6 258 38.0
RcHm_v2.0_Chr6g0265811 Rosa chinensis HOM05D003739 ORTHO05D003996 1.1e-25 123.2 664 26.4
Thhalv10024751m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 1.4e-25 122.9 261 34.9
FvH4_2g03400 Fragaria vesca HOM05D003739 ORTHO05D003996 1.4e-25 122.9 280 33.9
FvH4_2g09520 Fragaria vesca HOM05D003739 ORTHO05D003996 1.4e-25 122.9 277 33.9
PGR042G2822 Punica granatum HOM05D003739 ORTHO05D003996 1.8e-25 122.5 318 34.6
ATR0564G411 Amborella trichopoda HOM05D003739 ORTHO05D003996 2.4e-25 122.1 271 33.6
ECA234G4722 Erigeron canadensis HOM05D003739 ORTHO05D003996 4.1e-25 121.3 413 29.5
Sabra10G0016300 Salix brachista HOM05D003739 ORTHO05D003996 4.1e-25 121.3 300 35.0
Atru.chr5.3065 Acer truncatum HOM05D003739 ORTHO05D003996 5.3e-25 120.9 270 36.7
Cfa005045 Carpinus fangiana HOM05D003739 ORTHO05D003996 6.9e-25 120.6 747 26.4
Hund09716 Selenicereus undatus HOM05D003739 ORTHO05D003996 1.2e-24 119.8 250 36.4
ClCG01G008230 Citrullus lanatus HOM05D003739 ORTHO05D003996 1.5e-24 119.4 339 31.6
Nitab4.5_0006794g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 1.5e-24 119.4 604 25.8
FAN24G2517 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.0e-24 119.0 713 24.1
MD10G1070200 Malus domestica HOM05D003739 ORTHO05D003996 2.0e-24 119.0 258 37.6
AL7G11100 Arabidopsis lyrata HOM05D003739 ORTHO05D003996 3.4e-24 118.2 251 35.1
AUR62005990 Chenopodium quinoa HOM05D003739 ORTHO05D003996 4.5e-24 117.9 316 33.2
arahy.Tifrunner.gnm1.ann1.TF9NF6 Arachis hypogaea HOM05D003739 ORTHO05D003996 1.0e-23 116.7 270 35.6
COL.COLO4_32233 Corchorus olitorius HOM05D003739 ORTHO05D003996 1.3e-23 116.3 335 30.7
Lj6g0022884 Lotus japonicus HOM05D003739 ORTHO05D003996 1.7e-23 115.9 176 42.0
Aa31LG6G16100 Aethionema arabicum HOM05D003739 ORTHO05D003996 2.9e-23 115.2 242 35.1
AUR62028080 Chenopodium quinoa HOM05D003739 ORTHO05D003996 2.9e-23 115.2 275 36.4
TPR.G2246 Trifolium pratense HOM05D003739 ORTHO05D003996 6.5e-23 114.0 596 27.5
Dinv13445 Davidia involucrata HOM05D003739 ORTHO05D003996 4.2e-22 111.3 194 35.6
AT4G39160 Arabidopsis thaliana HOM05D003739 ORTHO05D003996 7.2e-22 110.5 255 33.7
Glyma.11G010900 Glycine max HOM05D003739 ORTHO05D003996 7.2e-22 110.5 534 27.2
SalBow6G4317 Salvia bowleyana HOM05D003739 ORTHO05D003996 7.2e-22 110.5 203 38.4
TAR376G0790 Trochodendron aralioides HOM05D003739 ORTHO05D003996 7.2e-22 110.5 189 39.7
Psat7g051640 Pisum sativum HOM05D003739 ORTHO05D003996 1.2e-21 109.8 235 39.6
Aa31LG7G15010 Aethionema arabicum HOM05D003739 ORTHO05D003996 2.1e-21 109.0 179 36.9
CARHR247590 Cardamine hirsuta HOM05D003739 ORTHO05D003996 3.6e-21 108.2 192 39.6
FAN27G2905 Fragaria x ananassa HOM05D003739 ORTHO05D003996 7.9e-21 107.1 708 25.1
Nitab4.5_0004903g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 7.9e-21 107.1 628 25.8
FvH4_2g09510 Fragaria vesca HOM05D003739 ORTHO05D003996 1.0e-20 106.7 227 33.5
A06p48670 Brassica napus HOM05D003739 ORTHO05D003996 1.8e-20 105.9 265 32.8
BraA06t27734Z Brassica rapa HOM05D003739 ORTHO05D003996 1.8e-20 105.9 265 32.8
THA.LOC104800691 Tarenaya hassleriana HOM05D003739 ORTHO05D003996 1.8e-20 105.9 219 33.3
C03p77640 Brassica napus HOM05D003739 ORTHO05D003996 3.9e-20 104.8 274 31.4
BolC3t20021H Brassica oleracea HOM05D003739 ORTHO05D003996 3.9e-20 104.8 274 31.4
BolC7t46745H Brassica oleracea HOM05D003739 ORTHO05D003996 3.9e-20 104.8 259 34.7
BcaNung03888 Brassica carinata HOM05D003739 ORTHO05D003996 5.1e-20 104.4 252 32.9
SEGI_13436 Sequoiadendron giganteum HOM05D003739 ORTHO05D003996 5.1e-20 104.4 154 42.9
Medtr8g091850 Medicago truncatula HOM05D003739 ORTHO05D003996 8.8e-20 103.6 202 39.1
HanXRQChr10g0289001 Helianthus annuus HOM05D003739 ORTHO05D003996 1.1e-19 103.2 277 35.0
FAN15G1163 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.0e-19 102.4 729 23.5
A08p23790 Brassica napus HOM05D003739 ORTHO05D003996 2.5e-19 102.1 241 32.4
Carub.0007s0104 Capsella rubella HOM05D003739 ORTHO05D003996 2.5e-19 102.1 580 26.6
BraA08t34331Z Brassica rapa HOM05D003739 ORTHO05D003996 5.7e-19 100.9 279 31.5
Zm00001eb261130 Zea mays HOM05D025681 ORTHO05D003996 9.7e-19 100.1 202 36.1
CARHR106820 Cardamine hirsuta HOM05D003739 ORTHO05D003996 1.7e-18 99.4 233 33.9
Sp3g07810 Schrenkiella parvula HOM05D003739 ORTHO05D000043 2.2e-18 99.0 276 31.5
BcaB03g12246 Brassica carinata HOM05D003739 ORTHO05D003996 4.8e-18 97.8 234 32.1
FAN24G0708 Fragaria x ananassa HOM05D003739 ORTHO05D003996 6.3e-18 97.4 463 25.3
Actinidia35828 Actinidia chinensis HOM05D003739 ORTHO05D003996 1.1e-17 96.7 239 35.1
Ca_17694_v3 Cicer arietinum L. HOM05D003739 ORTHO05D003996 1.4e-17 96.3 293 32.8
Hma1.2p1_1073F.1_g254250 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 1.4e-17 96.3 141 39.0
Zm00001eb249730 Zea mays HOM05D025681 ORTHO05D003996 1.4e-17 96.3 145 41.4
Gohir.A09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 1.2e-16 93.2 238 34.0
BcaC01g00285 Brassica carinata HOM05D000394 ORTHO05D000299 2.0e-16 92.4 267 29.2
Psat7g051160 Pisum sativum HOM05D003739 ORTHO05D003996 7.7e-16 90.5 204 37.7
BraA09t36326Z Brassica rapa HOM05D003739 ORTHO05D003996 2.9e-15 88.6 179 34.6
Dinv05659 Davidia involucrata HOM05D003739 ORTHO05D003996 2.9e-15 88.6 122 42.6
C09p07090 Brassica napus HOM05D003739 ORTHO05D003996 1.4e-14 86.3 240 30.0
BcaC04g23559 Brassica carinata HOM05D003739 ORTHO05D003996 2.5e-14 85.5 250 30.8
BcaNung02353 Brassica carinata HOM05D003739 ORTHO05D003996 3.2e-14 85.1 185 35.1
FAN27G3438 Fragaria x ananassa HOM05D003739 ORTHO05D003996 3.2e-14 85.1 304 27.3
Pp3c18_8710 Physcomitrium patens HOM05D003739 ORTHO05D003996 2.7e-13 82.0 287 29.3
CARHR112440 Cardamine hirsuta HOM05D003739 ORTHO05D003996 4.7e-13 81.3 60 61.7
Mapoly0023s0090 Marchantia polymorpha HOM05D003739 ORTHO05D003996 4.7e-13 81.3 202 30.2
EL10Ac3g05170 Beta vulgaris HOM05D003739 ORTHO05D003996 7.9e-13 80.5 317 30.9
Lj8C306T17 Lonicera japonica HOM05D003739 ORTHO05D003996 7.9e-13 80.5 203 31.5
BolC9t53626H Brassica oleracea HOM05D003739 ORTHO05D003996 1.0e-12 80.1 240 30.0
Pp3c21_11880 Physcomitrium patens HOM05D003739 ORTHO05D003996 1.4e-12 79.7 133 39.8
A09p06800 Brassica napus HOM05D003739 ORTHO05D003996 1.8e-12 79.3 242 30.6
Glyma.20G185167 Glycine max HOM05D003739 ORTHO05D003996 2.3e-12 79.0 105 41.0
TPR.G2191 Trifolium pratense HOM05D003739 ORTHO05D003996 6.7e-12 77.4 169 35.5
Medtr4g067250 Medicago truncatula HOM05D003739 ORTHO05D003996 8.8e-12 77.0 234 27.4
C07p63340 Brassica napus HOM05D003739 ORTHO05D003996 9.7e-11 73.6 308 28.6
CBR_g31667 Chara braunii HOM05D003739 ORTHO05D003996 9.7e-11 73.6 111 36.9
AagrBONN_evm.TU.Sc2ySwM_340.755 Anthoceros agrestis HOM05D003739 ORTHO05D003996 2.2e-10 72.4 137 34.3
AagrBONN_evm.TU.Sc2ySwM_344.3723 Anthoceros agrestis HOM05D003739 ORTHO05D003996 2.2e-10 72.4 137 34.3
vmacro15435 Vaccinium macrocarpon HOM05D003739 ORTHO05D003996 3.7e-10 71.6 284 26.8
Cpa.g.sc14.123 Carica papaya HOM05D003739 ORTHO05D003996 1.4e-09 69.7 139 33.8
AagrBONN_evm.TU.Sc2ySwM_368.1462 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.0e-09 67.4 209 31.6
FAN15G1290 Fragaria x ananassa HOM05D003739 ORTHO05D003996 7.0e-09 67.4 129 33.3
Dinv07186 Davidia involucrata HOM05D000053 ORTHO05D045112 1.5e-08 66.2 143 31.5
RcHm_v2.0_Chr6g0265821 Rosa chinensis HOM05D003739 ORTHO05D003996 4.5e-08 64.7 464 22.2
MCO01G601 Micromonas commoda HOM05D003739 ORTHO05D003996 7.7e-08 63.9 104 36.5
AagrBONN_evm.TU.Sc2ySwM_344.4525 Anthoceros agrestis HOM05D003739 ORTHO05D003996 2.9e-07 62.0 221 29.4
DCAR_004344 Daucus carota HOM05D003739 ORTHO05D003996 1.4e-06 59.7 356 25.0
CDE02G4347 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 1.9e-06 59.3 55 50.9
Manes.04G075172 Manihot esculenta HOM05D003739 ORTHO05D003996 2.5e-06 58.9 71 47.9


User provided reference genes

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