Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_028083 Vanilla planifolia HOM05D005277 ORTHO05D006319 3.4e-106 388.3 185 100.0
HPP92_016701 Vanilla planifolia HOM05D005277 ORTHO05D006319 7.2e-32 141.4 66 97.0
Duzib133G1303 Durio zibethinus HOM05D005277 ORTHO05D006319 6.1e-23 111.7 66 77.3
Gorai.004G156900 Gossypium raimondii HOM05D005277 ORTHO05D006319 8.0e-23 111.3 66 77.3
Os09g0560300 Oryza sativa ssp. japonica HOM05D005277 ORTHO05D006319 8.0e-23 111.3 64 79.7
BraA03t15618Z Brassica rapa HOM05D005277 ORTHO05D006319 1.0e-22 110.9 87 66.7
TWI59G0525 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 1.0e-22 110.9 66 75.8
Duzib138G0488 Durio zibethinus HOM05D005277 ORTHO05D006319 1.8e-22 110.2 66 75.8
Gohir.D07G149400 Gossypium hirsutum HOM05D005277 ORTHO05D006319 1.8e-22 110.2 66 75.8
Gorai.001G170800 Gossypium raimondii HOM05D005277 ORTHO05D006319 1.8e-22 110.2 66 75.8
FAN03G2608 Fragaria x ananassa HOM05D005277 ORTHO05D006319 5.2e-22 108.6 66 77.3
COL.COLO4_12662 Corchorus olitorius HOM05D005277 ORTHO05D006319 6.7e-22 108.2 66 74.2
A03p65670 Brassica napus HOM05D005277 ORTHO05D006319 8.8e-22 107.8 66 77.3
CARHR248750 Cardamine hirsuta HOM05D005277 ORTHO05D006319 8.8e-22 107.8 66 78.8
Thhalv10026679m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 8.8e-22 107.8 66 78.8
Gohir.A07G143600 Gossypium hirsutum HOM05D005277 ORTHO05D006319 8.8e-22 107.8 66 74.2
MBI07_g12793_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 1.2e-21 107.5 65 76.9
Potri.014G079800 Populus trichocarpa HOM05D005277 ORTHO05D006319 1.2e-21 107.5 65 75.4
TWI23G0263 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 1.2e-21 107.5 66 72.7
Thhalv10029049m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 1.5e-21 107.1 74 70.3
Manes.01G260200 Manihot esculenta HOM05D005277 ORTHO05D006319 1.5e-21 107.1 66 74.2
Potri.002G155800 Populus trichocarpa HOM05D005277 ORTHO05D006319 1.5e-21 107.1 65 75.4
arahy.Tifrunner.gnm1.ann1.A7XXX8 Arachis hypogaea HOM05D005277 ORTHO05D006319 2.0e-21 106.7 66 74.2
arahy.Tifrunner.gnm1.ann1.I9WHAY Arachis hypogaea HOM05D005277 ORTHO05D006319 2.0e-21 106.7 66 74.2
CDE06G0676 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 2.0e-21 106.7 58 82.8
MBI06_g06483_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 2.0e-21 106.7 70 74.3
Sc23g0003110 Simmondsia chinensis HOM05D005277 ORTHO05D006319 2.0e-21 106.7 66 78.8
Gohir.A08G129800 Gossypium hirsutum HOM05D005277 ORTHO05D006319 2.6e-21 106.3 66 72.7
QL08p049830 Quercus lobata HOM05D005277 ORTHO05D006319 3.3e-21 105.9 96 54.2
Sed0006100 Sechium edule HOM05D005277 ORTHO05D006319 3.3e-21 105.9 66 77.3
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 4.4e-21 105.5 67 73.1
Nn1g01427 Nelumbo nucifera HOM05D005277 ORTHO05D006319 5.7e-21 105.1 66 74.2
Hund16947 Selenicereus undatus HOM05D005277 ORTHO05D006319 5.7e-21 105.1 66 77.3
Aa31LG5G410 Aethionema arabicum HOM05D005277 ORTHO05D006319 7.5e-21 104.8 66 77.3
FAN01G0371 Fragaria x ananassa HOM05D005277 ORTHO05D006319 7.5e-21 104.8 66 77.3
FAN06G3712 Fragaria x ananassa HOM05D005277 ORTHO05D006319 7.5e-21 104.8 66 77.3
FAN06G3877 Fragaria x ananassa HOM05D005277 ORTHO05D006319 7.5e-21 104.8 66 77.3
Sp6g00620 Schrenkiella parvula HOM05D005277 ORTHO05D006319 7.5e-21 104.8 66 77.3
Zm00001eb320330 Zea mays HOM05D005277 ORTHO05D006319 7.5e-21 104.8 58 79.3
Manes.05G038000 Manihot esculenta HOM05D005277 ORTHO05D006319 9.7e-21 104.4 66 72.7
Sp7g35520 Schrenkiella parvula HOM05D002845 ORTHO05D006319 9.7e-21 104.4 64 78.1
Zm00001eb104680 Zea mays HOM05D005277 ORTHO05D006319 9.7e-21 104.4 59 78.0
CDE05G2617 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 1.3e-20 104.0 66 75.8
Gohir.D08G151200 Gossypium hirsutum HOM05D005277 ORTHO05D006319 1.3e-20 104.0 66 71.2
Sabra14G0058000 Salix brachista HOM05D005277 ORTHO05D006319 1.3e-20 104.0 68 69.1
Hund27308 Selenicereus undatus HOM05D005277 ORTHO05D006319 1.3e-20 104.0 65 76.9
AL6G52850 Arabidopsis lyrata HOM05D005277 ORTHO05D006319 1.7e-20 103.6 66 75.8
MELO3C023322.2 Cucumis melo HOM05D005277 ORTHO05D006319 1.7e-20 103.6 76 71.1
Ah.05g176400 Amaranthus hybridus HOM05D005277 ORTHO05D006319 2.2e-20 103.2 67 68.7
GSVIVG01026823001 Vitis vinifera HOM05D005277 ORTHO05D006319 2.2e-20 103.2 86 60.5
Haze_15461 Corylus avellana HOM05D005277 ORTHO05D006319 2.8e-20 102.8 69 71.0
RcHm_v2.0_Chr1g0353371 Rosa chinensis HOM05D005277 ORTHO05D006319 2.8e-20 102.8 66 74.2
Thecc.01G365200 Theobroma cacao HOM05D005277 ORTHO05D006319 2.8e-20 102.8 66 74.2
EL10Ac1g00522 Beta vulgaris HOM05D005277 ORTHO05D006319 3.7e-20 102.4 67 74.6
CsaV3_2G015020 Cucumis sativus L. HOM05D005277 ORTHO05D006319 3.7e-20 102.4 66 74.2
Lj1g0008169 Lotus japonicus HOM05D005277 ORTHO05D006319 3.7e-20 102.4 65 73.8
BolC7t46684H Brassica oleracea HOM05D005277 ORTHO05D006319 4.8e-20 102.1 69 69.6
Carub.0006s3664 Capsella rubella HOM05D005277 ORTHO05D006319 4.8e-20 102.1 66 74.2
THA.LOC104801449 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 4.8e-20 102.1 66 72.7
Atru.chr5.442 Acer truncatum HOM05D005277 ORTHO05D006319 6.3e-20 101.7 73 67.1
C07p62700 Brassica napus HOM05D005277 ORTHO05D006319 6.3e-20 101.7 66 71.2
CiPaw.02G027600 Carya illinoinensis HOM05D005277 ORTHO05D006319 6.3e-20 101.7 66 74.2
Prupe.2G159900 Prunus persica HOM05D005277 ORTHO05D006319 6.3e-20 101.7 66 77.3
MD01G1052300 Malus domestica HOM05D005277 ORTHO05D006319 8.2e-20 101.3 66 77.3
RcHm_v2.0_Chr0c39g0503241 Rosa chinensis HOM05D005277 ORTHO05D006319 8.2e-20 101.3 65 72.3
RcHm_v2.0_Chr1g0353201 Rosa chinensis HOM05D005277 ORTHO05D006319 8.2e-20 101.3 65 72.3
Cpa.g.c32742 Carica papaya HOM05D005277 ORTHO05D006319 1.1e-19 100.9 65 70.8
AT4G00585 Arabidopsis thaliana HOM05D005277 ORTHO05D006319 1.4e-19 100.5 66 74.2
CSS0040378 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 1.4e-19 100.5 68 72.1
ClCG11G004150 Citrullus lanatus HOM05D005277 ORTHO05D006319 1.4e-19 100.5 66 74.2
Oeu021782.1 Olea europaea HOM05D005277 ORTHO05D006319 1.4e-19 100.5 69 71.0
RcHm_v2.0_Chr1g0353351 Rosa chinensis HOM05D005277 ORTHO05D006319 1.4e-19 100.5 64 73.4
Cfa003961 Carpinus fangiana HOM05D005277 ORTHO05D006319 1.8e-19 100.1 66 72.7
Lsat_1_v5_gn_8_8281 Lactuca sativa HOM05D005277 ORTHO05D006319 2.4e-19 99.8 68 73.5
THA.LOC104817018 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 2.4e-19 99.8 59 78.0
SHI13469 Sapria himalayana HOM05D005277 ORTHO05D006319 3.1e-19 99.4 85 56.5
Rhsim03G0179700 Rhododendron simsii HOM05D005277 ORTHO05D006319 5.3e-19 98.6 64 71.9
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 5.3e-19 98.6 67 73.1
Actinidia32868 Actinidia chinensis HOM05D005277 ORTHO05D006319 7.0e-19 98.2 66 68.2
Actinidia34103 Actinidia chinensis HOM05D005277 ORTHO05D006319 9.1e-19 97.8 66 68.2
Nitab4.5_0008315g0010 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.2e-18 97.4 63 73.0
PGR042G3267 Punica granatum HOM05D005277 ORTHO05D006319 1.2e-18 97.4 66 68.2
CANSAT56G2015 Cannabis sativa HOM05D005277 ORTHO05D006319 1.6e-18 97.1 66 71.2
Ca_07884_v3 Cicer arietinum L. HOM05D005277 ORTHO05D006319 1.6e-18 97.1 66 71.2
HanXRQChr08g0209231 Helianthus annuus HOM05D005277 ORTHO05D006319 1.6e-18 97.1 57 78.9
Sed0005058 Sechium edule HOM05D005277 ORTHO05D006319 1.6e-18 97.1 66 72.7
Hma1.2p1_2482F.1_g323010 Hydrangea macrophylla HOM05D005277 ORTHO05D006319 2.0e-18 96.7 65 70.8
Lalb_Chr19g0127071 Lupinus albus HOM05D005277 ORTHO05D006319 2.0e-18 96.7 64 71.9
BcaNung07162 Brassica carinata HOM05D005277 ORTHO05D006319 2.7e-18 96.3 59 76.3
ECA233G3829 Erigeron canadensis HOM05D005277 ORTHO05D006319 2.7e-18 96.3 66 69.7
Nitab4.5_0000080g0040 Nicotiana tabacum HOM05D005277 ORTHO05D006319 2.7e-18 96.3 65 70.8
Phvul.008G068800 Phaseolus vulgaris HOM05D005277 ORTHO05D006319 2.7e-18 96.3 66 71.2
A03p32120 Brassica napus HOM05D005277 ORTHO05D006319 3.5e-18 95.9 55 76.4
BraA03t12382Z Brassica rapa HOM05D005277 ORTHO05D006319 3.5e-18 95.9 55 76.4
CiPaw.01G056300 Carya illinoinensis HOM05D005277 ORTHO05D006319 3.5e-18 95.9 66 69.7
BcaNung05359 Brassica carinata HOM05D005277 ORTHO05D006319 4.5e-18 95.5 54 75.9
Ciclev10023111m.g Citrus clementina HOM05D005277 ORTHO05D006319 4.5e-18 95.5 66 68.2
Medtr7g076630 Medicago truncatula HOM05D005277 ORTHO05D006319 4.5e-18 95.5 66 71.2
BolC3t16185H Brassica oleracea HOM05D005277 ORTHO05D006319 5.9e-18 95.1 59 74.6
BraA09t35720Z Brassica rapa HOM05D005277 ORTHO05D006319 5.9e-18 95.1 94 50.0
PSO782G2674 Papaver somniferum HOM05D005277 ORTHO05D006319 5.9e-18 95.1 66 69.7
A09p00410 Brassica napus HOM05D005277 ORTHO05D006319 7.7e-18 94.7 57 73.7
Nitab4.5_0000716g0150 Nicotiana tabacum HOM05D005277 ORTHO05D006319 7.7e-18 94.7 69 66.7
Nitab4.5_0003365g0020 Nicotiana tabacum HOM05D005277 ORTHO05D006319 7.7e-18 94.7 69 66.7
TPR.G37794 Trifolium pratense HOM05D005277 ORTHO05D006319 7.7e-18 94.7 65 69.2
unitig_0.g2484 Utricularia gibba HOM05D002154 ORTHO05D002362 7.7e-18 94.7 63 73.0
HanXRQChr02g0054711 Helianthus annuus HOM05D005277 ORTHO05D006319 1.0e-17 94.4 66 74.2
BcaC04g24159 Brassica carinata HOM05D005277 ORTHO05D006319 1.3e-17 94.0 59 74.6
C09p00490 Brassica napus HOM05D005277 ORTHO05D006319 1.3e-17 94.0 58 74.1
Peaxi162Scf01969g00020 Petunia axillaris HOM05D005277 ORTHO05D006319 1.3e-17 94.0 66 66.7
BolC9t52983H Brassica oleracea HOM05D005277 ORTHO05D006319 1.7e-17 93.6 65 69.2
Glyma.09G263000 Glycine max HOM05D005277 ORTHO05D006319 2.2e-17 93.2 48 79.2
Lalb_Chr01g0021101 Lupinus albus HOM05D005277 ORTHO05D006319 2.2e-17 93.2 55 76.4
BcaC01g06868 Brassica carinata HOM05D005277 ORTHO05D006319 2.9e-17 92.8 66 66.7
BcaNung05357 Brassica carinata HOM05D005277 ORTHO05D006319 2.9e-17 92.8 66 66.7
Psat3g111720 Pisum sativum HOM05D005277 ORTHO05D006319 2.9e-17 92.8 66 69.7
vmacro06693 Vaccinium macrocarpon HOM05D005277 ORTHO05D006319 2.9e-17 92.8 65 66.2
Peaxi162Scf00915g00031 Petunia axillaris HOM05D005277 ORTHO05D006319 3.8e-17 92.4 65 66.2
BcaB01g02260 Brassica carinata HOM05D005277 ORTHO05D006319 8.5e-17 91.3 66 66.7
Solyc03g025910.3 Solanum lycopersicum HOM05D005277 ORTHO05D006319 8.5e-17 91.3 65 69.2
Sopen03g004720 Solanum pennellii HOM05D005277 ORTHO05D006319 8.5e-17 91.3 65 69.2
PGSC0003DMG400014288 Solanum tuberosum HOM05D005277 ORTHO05D006319 8.5e-17 91.3 65 69.2
Migut.F00352 Erythranthe guttata HOM05D005277 ORTHO05D006319 1.5e-16 90.5 66 66.7
Glyma.18G229200 Glycine max HOM05D005277 ORTHO05D006319 1.5e-16 90.5 48 77.1
C03p39140 Brassica napus HOM05D005277 ORTHO05D006319 3.2e-16 89.4 57 71.9
AUR62004311 Chenopodium quinoa HOM05D005277 ORTHO05D006319 3.2e-16 89.4 57 70.2
Aqoxy7G00369 Aquilegia oxysepala HOM05D005277 ORTHO05D006319 4.2e-16 89.0 66 68.2
CSS0022794 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 5.5e-16 88.6 66 65.2
ATR0721G079 Amborella trichopoda HOM05D005277 ORTHO05D006319 9.4e-16 87.8 58 69.0
ATR0763G077 Amborella trichopoda HOM05D005277 ORTHO05D006319 1.2e-15 87.4 67 64.2
ATR0174G019 Amborella trichopoda HOM05D005277 ORTHO05D006319 3.6e-15 85.9 59 67.8
AUR62022763 Chenopodium quinoa HOM05D005277 ORTHO05D006319 6.1e-15 85.1 63 65.1
CSS0038928 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 8.8e-14 81.3 74 54.1
SalBow2G0266 Salvia bowleyana HOM05D005277 ORTHO05D006319 1.5e-13 80.5 63 61.9
FAN10G1490 Fragaria x ananassa HOM05D005277 ORTHO05D006319 2.6e-13 79.7 38 86.8
Cc00_g02540 Coffea canephora HOM05D005277 ORTHO05D006319 4.4e-13 79.0 62 61.3
GSVIVG01010541001 Vitis vinifera HOM05D005277 ORTHO05D006319 5.7e-13 78.6 40 82.5
DCAR_018191 Daucus carota HOM05D005277 ORTHO05D006319 3.7e-12 75.9 48 66.7
SMO203G0011 Selaginella moellendorffii HOM05D005277 ORTHO05D006319 2.4e-11 73.2 55 56.4
AagrBONN_evm.TU.Sc2ySwM_369.4 Anthoceros agrestis HOM05D005277 ORTHO05D006319 2.0e-10 70.1 61 60.7
Cc02_g03110 Coffea canephora HOM05D005277 ORTHO05D006319 2.0e-10 70.1 40 72.5
Pp3c7_13700 Physcomitrium patens HOM05D005277 ORTHO05D006319 2.0e-10 70.1 66 54.5
Mapoly0023s0078 Marchantia polymorpha HOM05D005277 ORTHO05D006319 2.7e-10 69.7 66 57.6


User provided reference genes

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