Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_028037 Vanilla planifolia HOM05D004631 ORTHO05D005223 1.6e-129 466.1 235 100.0
Nn4g22438 Nelumbo nucifera HOM05D004631 ORTHO05D005223 1.2e-68 263.8 237 57.4
PSO782G2324 Papaver somniferum HOM05D004631 ORTHO05D005223 7.4e-66 254.6 233 54.9
Lj7A605T75 Lonicera japonica HOM05D004631 ORTHO05D005223 1.6e-65 253.4 235 57.0
PSO063G4908 Papaver somniferum HOM05D004631 ORTHO05D005223 1.6e-65 253.4 233 54.5
MBI05_g32279_MAGBIO Magnolia biondii HOM05D004631 ORTHO05D005223 4.8e-65 251.9 231 56.7
Haze_14815 Corylus avellana HOM05D004631 ORTHO05D005223 5.3e-64 248.4 230 55.2
GSVIVG01001850001 Vitis vinifera HOM05D004631 ORTHO05D005223 6.9e-64 248.1 239 55.2
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 1.2e-63 247.3 235 54.9
TWI59G0755 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 1.2e-63 247.3 235 52.3
QL02p072911 Quercus lobata HOM05D004631 ORTHO05D005223 2.0e-63 246.5 239 54.0
CAN.G473.59 Capsicum annuum HOM05D004631 ORTHO05D005223 2.6e-63 246.1 236 55.9
Cfa007277 Carpinus fangiana HOM05D004631 ORTHO05D005223 2.6e-63 246.1 238 53.4
Sopen02g038460 Solanum pennellii HOM05D004631 ORTHO05D005223 2.6e-63 246.1 236 55.1
Solyc02g093820.4 Solanum lycopersicum HOM05D004631 ORTHO05D005223 4.5e-63 245.4 236 55.5
Prupe.3G299600 Prunus persica HOM05D004631 ORTHO05D005223 5.9e-63 245.0 235 54.5
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 5.9e-63 245.0 235 55.7
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 1.0e-62 244.2 233 54.1
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 1.0e-62 244.2 236 53.0
PGSC0003DMG400020270 Solanum tuberosum HOM05D004631 ORTHO05D005223 1.3e-62 243.8 236 55.1
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 2.9e-62 242.7 236 53.8
vmacro05924 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 2.9e-62 242.7 235 54.5
CiPaw.04G033100 Carya illinoinensis HOM05D004631 ORTHO05D005223 5.0e-62 241.9 236 54.2
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 5.0e-62 241.9 235 54.0
Gohir.D10G085100 Gossypium hirsutum HOM05D004631 ORTHO05D005223 1.4e-61 240.4 238 52.5
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 1.4e-61 240.4 235 51.9
Cpa.g.c34704 Carica papaya HOM05D004631 ORTHO05D005223 1.9e-61 240.0 229 55.5
HanXRQChr17g0549531 Helianthus annuus HOM05D004631 ORTHO05D005223 1.9e-61 240.0 238 53.8
TAR371G0552 Trochodendron aralioides HOM05D004631 ORTHO05D005223 3.2e-61 239.2 235 53.6
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 4.2e-61 238.8 236 55.1
Gorai.011G093000 Gossypium raimondii HOM05D004631 ORTHO05D005223 4.2e-61 238.8 238 52.1
Manes.07G089400 Manihot esculenta HOM05D004631 ORTHO05D005223 5.5e-61 238.4 235 51.1
DCAR_021756 Daucus carota HOM05D004631 ORTHO05D005223 9.4e-61 237.7 238 54.6
TAR629G3282 Trochodendron aralioides HOM05D004631 ORTHO05D005223 9.4e-61 237.7 235 54.5
HPP92_027613 Vanilla planifolia HOM05D004631 ORTHO05D005223 9.4e-61 237.7 116 99.1
CiPaw.03G050500 Carya illinoinensis HOM05D004631 ORTHO05D005223 1.2e-60 237.3 238 53.4
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 2.1e-60 236.5 236 54.2
Hma1.2p1_0227F.1_g095910 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 2.1e-60 236.5 238 54.6
CSS0019474 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 2.7e-60 236.1 235 53.6
COL.COLO4_29276 Corchorus olitorius HOM05D004631 ORTHO05D005223 3.6e-60 235.7 229 52.8
Duzib264G0826 Durio zibethinus HOM05D004631 ORTHO05D005223 3.6e-60 235.7 236 53.0
SGA_v2.0_scaffold18G08240 Striga asiatica HOM05D004631 ORTHO05D005223 3.6e-60 235.7 238 52.1
Hma1.2p1_0279F.1_g112270 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 6.1e-60 235.0 235 53.6
PGR142G2057 Punica granatum HOM05D004631 ORTHO05D005223 6.1e-60 235.0 238 53.4
Gohir.A10G160500 Gossypium hirsutum HOM05D004631 ORTHO05D005223 1.0e-59 234.2 240 51.7
Cc07_g00410 Coffea canephora HOM05D004631 ORTHO05D005223 1.4e-59 233.8 235 53.2
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 1.4e-59 233.8 235 53.6
FAN02G2863 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.4e-59 233.8 235 53.6
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 1.8e-59 233.4 235 51.1
Potri.001G264500 Populus trichocarpa HOM05D004631 ORTHO05D005223 2.3e-59 233.0 235 51.5
Sabra16G0162600 Salix brachista HOM05D004631 ORTHO05D005223 3.9e-59 232.3 235 51.1
Eucgr.I01692 Eucalyptus grandis HOM05D004631 ORTHO05D005223 5.1e-59 231.9 237 51.9
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 6.7e-59 231.5 235 52.8
Sabra09G0043700 Salix brachista HOM05D004631 ORTHO05D005223 8.8e-59 231.1 235 51.5
Glyma.16G063100 Glycine max HOM05D004631 ORTHO05D005223 1.1e-58 230.7 238 51.7
FAN05G1873 Fragaria x ananassa HOM05D004631 ORTHO05D005223 2.5e-58 229.6 236 53.4
Lalb_Chr14g0363051 Lupinus albus HOM05D004631 ORTHO05D005223 4.3e-58 228.8 238 52.1
Oeu050430.2 Olea europaea HOM05D004631 ORTHO05D005223 4.3e-58 228.8 270 48.5
Rhsim08G0046200 Rhododendron simsii HOM05D004631 ORTHO05D005223 4.3e-58 228.8 235 53.6
DCAR_011290 Daucus carota HOM05D004631 ORTHO05D005223 5.7e-58 228.4 237 51.9
TWI23G0469 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 5.7e-58 228.4 235 49.8
FAN14G1903 Fragaria x ananassa HOM05D004631 ORTHO05D005223 9.7e-58 227.6 236 53.0
Glyma.19G082400 Glycine max HOM05D004631 ORTHO05D005223 9.7e-58 227.6 241 51.9
Os04g0485200 Oryza sativa ssp. japonica HOM05D004631 ORTHO05D005223 9.7e-58 227.6 230 50.9
Potri.009G059300 Populus trichocarpa HOM05D004631 ORTHO05D005223 3.7e-57 225.7 237 50.2
vmacro18314 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 3.7e-57 225.7 233 54.5
unitig_62.g23368 Utricularia gibba HOM05D004631 ORTHO05D005223 4.8e-57 225.3 226 51.8
Carub.0005s0558 Capsella rubella HOM05D004631 ORTHO05D005223 6.3e-57 224.9 232 51.3
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 8.2e-57 224.6 238 49.6
Atru.chr6.2487 Acer truncatum HOM05D004631 ORTHO05D005223 1.1e-56 224.2 235 51.5
AT3G27310 Arabidopsis thaliana HOM05D004631 ORTHO05D005223 1.1e-56 224.2 232 51.7
arahy.Tifrunner.gnm1.ann1.NS464T Arachis hypogaea HOM05D004631 ORTHO05D005223 1.8e-56 223.4 221 54.8
FAN09G3073 Fragaria x ananassa HOM05D004631 ORTHO05D005223 3.1e-56 222.6 236 51.7
arahy.Tifrunner.gnm1.ann1.5W0L45 Arachis hypogaea HOM05D004631 ORTHO05D005223 4.1e-56 222.2 221 54.8
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 5.3e-56 221.9 270 46.7
Gorai.012G089800 Gossypium raimondii HOM05D004631 ORTHO05D005223 9.1e-56 221.1 239 50.2
CARHR148590 Cardamine hirsuta HOM05D004631 ORTHO05D005223 2.6e-55 219.5 238 49.2
Ca_04405_v3 Cicer arietinum L. HOM05D004631 ORTHO05D005223 2.6e-55 219.5 224 52.7
Gohir.D04G079800 Gossypium hirsutum HOM05D004631 ORTHO05D005223 3.4e-55 219.2 239 49.8
Sed0025843 Sechium edule HOM05D004631 ORTHO05D005223 3.4e-55 219.2 238 51.3
Zm00001eb425170 Zea mays HOM05D004631 ORTHO05D005223 3.4e-55 219.2 238 50.4
Dinv25693 Davidia involucrata HOM05D004631 ORTHO05D005223 5.9e-55 218.4 194 57.2
Zm00001eb079230 Zea mays HOM05D004631 ORTHO05D005223 5.9e-55 218.4 238 49.6
TPR.G29003 Trifolium pratense HOM05D004631 ORTHO05D005223 7.7e-55 218.0 223 52.0
AL5G16540 Arabidopsis lyrata HOM05D004631 ORTHO05D005223 1.0e-54 217.6 232 50.4
BcaC06g31006 Brassica carinata HOM05D004631 ORTHO05D005223 1.0e-54 217.6 232 50.4
BcaC06g33833 Brassica carinata HOM05D004631 ORTHO05D005223 1.7e-54 216.9 219 52.1
BolC7t44152H Brassica oleracea HOM05D004631 ORTHO05D005223 1.7e-54 216.9 219 52.1
ATR0824G076 Amborella trichopoda HOM05D004631 ORTHO05D005223 2.2e-54 216.5 232 50.0
Thhalv10004822m.g Eutrema salsugineum HOM05D004631 ORTHO05D005223 2.2e-54 216.5 236 49.2
C07p36360 Brassica napus HOM05D004631 ORTHO05D005223 5.0e-54 215.3 219 51.1
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 6.5e-54 214.9 233 48.5
Lj2g0014181 Lotus japonicus HOM05D004631 ORTHO05D005223 1.1e-53 214.2 227 50.7
Actinidia05943 Actinidia chinensis HOM05D000918 ORTHO05D000791 1.9e-53 213.4 199 56.3
Lsat_1_v5_gn_0_32720 Lactuca sativa HOM05D004631 ORTHO05D005223 2.5e-53 213.0 236 48.3
ClCG11G006850 Citrullus lanatus HOM05D004631 ORTHO05D005223 7.2e-53 211.5 260 45.8
ECA246G0472 Erigeron canadensis HOM05D004631 ORTHO05D005223 9.4e-53 211.1 248 48.0
Sed0000329 Sechium edule HOM05D004631 ORTHO05D005223 9.4e-53 211.1 238 49.6
CsaV3_6G001200 Cucumis sativus L. HOM05D004631 ORTHO05D005223 1.6e-52 210.3 238 48.7
HanXRQChr15g0487081 Helianthus annuus HOM05D004631 ORTHO05D005223 1.6e-52 210.3 243 51.9
Psat1g084240 Pisum sativum HOM05D004631 ORTHO05D005223 2.7e-52 209.5 218 50.0
EL10Ac5g10455 Beta vulgaris HOM05D004631 ORTHO05D005223 4.7e-52 208.8 235 46.8
A06p41300 Brassica napus HOM05D004631 ORTHO05D005223 4.7e-52 208.8 219 49.8
BraA06t27055Z Brassica rapa HOM05D004631 ORTHO05D005223 4.7e-52 208.8 219 49.8
AUR62032242 Chenopodium quinoa HOM05D004631 ORTHO05D005223 4.7e-52 208.8 240 48.3
Gohir.A05G341700 Gossypium hirsutum HOM05D004631 ORTHO05D005223 6.1e-52 208.4 191 55.5
AUR62011927 Chenopodium quinoa HOM05D004631 ORTHO05D005223 1.0e-51 207.6 240 48.3
Peaxi162Scf00420g00342 Petunia axillaris HOM05D004631 ORTHO05D005223 6.7e-51 204.9 236 48.7
Peaxi162Scf00420g00345 Petunia axillaris HOM05D004631 ORTHO05D005223 6.7e-51 204.9 236 48.7
Dinv33383 Davidia involucrata HOM05D004631 ORTHO05D005223 8.8e-51 204.5 167 62.3
Lsat_1_v5_gn_4_185741 Lactuca sativa HOM05D004631 ORTHO05D005223 1.1e-50 204.1 235 49.8
Phvul.008G148800 Phaseolus vulgaris HOM05D004631 ORTHO05D005223 1.1e-50 204.1 240 50.4
Sp2g16470 Schrenkiella parvula HOM05D004631 ORTHO05D005223 1.5e-50 203.8 236 47.9
Sc03g0007030 Simmondsia chinensis HOM05D004631 ORTHO05D005223 2.6e-50 203.0 194 53.6
VMungo1383G3654 Vigna mungo HOM05D004631 ORTHO05D005223 4.4e-50 202.2 236 49.2
Aa31LG2G5340 Aethionema arabicum HOM05D004631 ORTHO05D005223 5.7e-50 201.8 240 45.8
MSTRG.3110 Avicennia marina HOM05D004631 ORTHO05D005223 1.7e-49 200.3 231 46.8
Lj1g0026695 Lotus japonicus HOM05D004631 ORTHO05D005223 2.2e-49 199.9 243 46.9
ECA232G0338 Erigeron canadensis HOM05D004631 ORTHO05D005223 1.4e-48 197.2 239 48.1
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 7.0e-48 194.9 181 55.8
Medtr6g023080 Medicago truncatula HOM05D004631 ORTHO05D005223 9.1e-48 194.5 210 49.0
SalBow1G3920 Salvia bowleyana HOM05D004631 ORTHO05D005223 1.0e-46 191.0 267 41.6
Nitab4.5_0001863g0070 Nicotiana tabacum HOM05D004631 ORTHO05D005223 2.9e-46 189.5 229 48.0
SalBow1G0328 Salvia bowleyana HOM05D004631 ORTHO05D005223 2.9e-46 189.5 271 42.4
Oeu058758.2 Olea europaea HOM05D004631 ORTHO05D005223 5.0e-46 188.7 167 58.7
Mapoly0078s0021 Marchantia polymorpha HOM05D004631 ORTHO05D005223 4.7e-44 182.2 237 43.0
MELO3C008218.2 Cucumis melo HOM05D004631 ORTHO05D005223 2.2e-41 173.3 191 49.7
Medtr6g022770 Medicago truncatula HOM05D004631 ORTHO05D005223 6.3e-41 171.8 123 66.7
TPR.G2332 Trifolium pratense HOM05D004631 ORTHO05D005223 1.8e-40 170.2 196 48.0
Medtr0531s0010 Medicago truncatula HOM05D004631 ORTHO05D005223 2.0e-39 166.8 168 51.8
Ciclev10003548m.g Citrus clementina HOM05D004631 ORTHO05D005223 2.9e-38 162.9 250 44.4
Pp3c7_140 Physcomitrium patens HOM05D004631 ORTHO05D005223 8.0e-36 154.8 234 42.3
HPP92_027614 Vanilla planifolia HOM05D004631 ORTHO05D005223 2.3e-35 153.3 79 98.7
MD10G1138200 Malus domestica HOM05D004631 ORTHO05D005223 6.8e-35 151.8 123 59.3
Prupe.8G176800 Prunus persica HOM05D004631 ORTHO05D005223 6.8e-35 151.8 128 60.2
SMO199G0125 Selaginella moellendorffii HOM05D004631 ORTHO05D005223 3.7e-33 146.0 227 39.2
Potri.001G337533 Populus trichocarpa HOM05D004631 ORTHO05D005223 1.5e-26 124.0 129 48.8
Nitab4.5_0008718g0050 Nicotiana tabacum HOM05D004631 ORTHO05D005223 3.4e-26 122.9 180 47.2
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 1.7e-25 120.6 116 59.5
Eucgr.L03061 Eucalyptus grandis HOM05D004631 ORTHO05D005223 2.4e-24 116.7 85 61.2
Medtr4g103350 Medicago truncatula HOM05D004631 ORTHO05D005223 2.0e-23 113.6 153 44.4
FAN24G1590 Fragaria x ananassa HOM05D004631 ORTHO05D005223 3.5e-23 112.8 135 48.9
FAN27G0193 Fragaria x ananassa HOM05D004631 ORTHO05D005223 3.5e-23 112.8 135 48.9
FvH4_2g09210 Fragaria vesca HOM05D004631 ORTHO05D005223 1.0e-22 111.3 134 48.5
A09p03370 Brassica napus HOM05D004631 ORTHO05D005223 7.3e-21 105.1 119 47.1
BraA09t35975Z Brassica rapa HOM05D004631 ORTHO05D005223 7.3e-21 105.1 119 47.1
BraA09t35976Z Brassica rapa HOM05D004631 ORTHO05D005223 7.3e-21 105.1 119 47.1
BcaC04g23906 Brassica carinata HOM05D004631 ORTHO05D005223 1.3e-17 94.4 82 59.8
Zm00001eb055680 Zea mays HOM05D004631 ORTHO05D005223 1.1e-13 81.3 106 47.2
RcHm_v2.0_Chr6g0265061 Rosa chinensis HOM05D004631 ORTHO05D005223 5.6e-13 79.0 120 44.2
SMO361G0508 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 9.5e-13 78.2 211 31.3
SMO361G0265 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 1.2e-12 77.8 243 28.8
BcaB04g19435 Brassica carinata HOM05D002252 ORTHO05D002451 2.9e-09 66.6 102 38.2
CBR_g3474 Chara braunii HOM05D006041 ORTHO05D007473 2.0e-07 60.5 158 27.8
MSTRG.2140 Avicennia marina HOM05D006041 ORTHO05D007473 2.7e-07 60.1 119 31.9
CANSAT01G0691 Cannabis sativa HOM05D006041 ORTHO05D007473 4.6e-07 59.3 91 36.3
Actinidia36166 Actinidia chinensis HOM05D004631 ORTHO05D005223 1.3e-06 57.8 62 50.0
MELO3C005281.2 Cucumis melo HOM05D006041 ORTHO05D007473 1.3e-06 57.8 128 30.5
DCAR_007323 Daucus carota HOM05D006041 ORTHO05D007473 1.3e-06 57.8 91 35.2
Thhalv10004151m.g Eutrema salsugineum HOM05D006041 ORTHO05D007473 1.7e-06 57.4 119 34.5
Glyma.05G235400 Glycine max HOM05D006041 ORTHO05D007473 2.3e-06 57.0 91 36.3
MBI19_g21093_MAGBIO Magnolia biondii HOM05D006041 ORTHO05D007473 2.3e-06 57.0 139 30.2
Phvul.002G319700 Phaseolus vulgaris HOM05D006041 ORTHO05D007473 2.3e-06 57.0 91 36.3
Rhsim09G0037900 Rhododendron simsii HOM05D006041 ORTHO05D007473 3.0e-06 56.6 120 31.7
arahy.Tifrunner.gnm1.ann1.BAL5EB Arachis hypogaea HOM05D006041 ORTHO05D007473 3.9e-06 56.2 91 35.2
Haze_10912 Corylus avellana HOM05D006041 ORTHO05D007473 3.9e-06 56.2 91 36.3
Os09g0401600 Oryza sativa ssp. japonica HOM05D006041 ORTHO05D007473 3.9e-06 56.2 115 32.2
CSS0021041 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 5.0e-06 55.8 119 31.9
CSS0021655 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 5.0e-06 55.8 119 31.9
Cc11_g08020 Coffea canephora HOM05D006041 ORTHO05D007473 5.0e-06 55.8 120 32.5
ECA233G3443 Erigeron canadensis HOM05D006041 ORTHO05D007473 5.0e-06 55.8 121 33.1
Glyma.08G042900 Glycine max HOM05D006041 ORTHO05D007473 5.0e-06 55.8 91 35.2
Gohir.A01G147900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 5.0e-06 55.8 171 26.9
Gorai.002G173400 Gossypium raimondii HOM05D006041 ORTHO05D007473 5.0e-06 55.8 134 30.6
Lsat_1_v5_gn_8_45641 Lactuca sativa HOM05D006041 ORTHO05D007473 5.0e-06 55.8 121 31.4
PGR142G4228 Punica granatum HOM05D006041 ORTHO05D007473 5.0e-06 55.8 122 27.0
Sabra16G0218300 Salix brachista HOM05D004631 ORTHO05D005223 5.0e-06 55.8 44 54.5
PGSC0003DMG400032118 Solanum tuberosum HOM05D006041 ORTHO05D007473 5.0e-06 55.8 91 34.1
arahy.Tifrunner.gnm1.ann1.IVEQ23 Arachis hypogaea HOM05D006041 ORTHO05D007473 8.6e-06 55.1 91 34.1
Cpa.g.c27573.2 Carica papaya HOM05D006041 ORTHO05D007473 8.6e-06 55.1 91 35.2
Gohir.D01G141100 Gossypium hirsutum HOM05D006041 ORTHO05D007473 8.6e-06 55.1 91 34.1


User provided reference genes

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