Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_028026 Vanilla planifolia HOM05D004515 ORTHO05D006013 1.0e-108 396.7 204 100.0
HPP92_012630 Vanilla planifolia HOM05D004515 ORTHO05D006013 8.6e-103 377.1 202 97.0
Nn2g11487 Nelumbo nucifera HOM05D004515 ORTHO05D006013 2.6e-75 285.8 193 75.6
Manes.07G128900 Manihot esculenta HOM05D004515 ORTHO05D006013 2.2e-74 282.7 193 75.1
Thecc.10G018200 Theobroma cacao HOM05D004515 ORTHO05D006013 4.9e-74 281.6 193 73.6
Manes.10G013300 Manihot esculenta HOM05D004515 ORTHO05D006013 8.4e-74 280.8 191 74.3
TAR633G2451 Trochodendron aralioides HOM05D004515 ORTHO05D006013 8.4e-74 280.8 197 72.1
Glyma.18G028000 Glycine max HOM05D004515 ORTHO05D006013 3.2e-73 278.9 191 75.4
Glyma.11G229300 Glycine max HOM05D004515 ORTHO05D006013 5.4e-73 278.1 191 74.9
Sabra08G0049800 Salix brachista HOM05D004515 ORTHO05D006013 7.1e-73 277.7 193 72.0
Potri.008G067900 Populus trichocarpa HOM05D004515 ORTHO05D006013 9.3e-73 277.3 193 72.0
COL.COLO4_25711 Corchorus olitorius HOM05D004515 ORTHO05D006013 1.2e-72 276.9 191 72.3
Duzib128G1522 Durio zibethinus HOM05D004515 ORTHO05D006013 1.2e-72 276.9 193 72.0
VMungo1383G2049 Vigna mungo HOM05D004515 ORTHO05D006013 1.2e-72 276.9 191 74.3
Lalb_Chr08g0231721 Lupinus albus HOM05D004515 ORTHO05D006013 2.1e-72 276.2 193 72.5
Gorai.010G198300 Gossypium raimondii HOM05D004515 ORTHO05D006013 2.7e-72 275.8 194 71.1
CiPaw.02G192100 Carya illinoinensis HOM05D004515 ORTHO05D006013 3.5e-72 275.4 193 73.1
Rhsim03G0143400 Rhododendron simsii HOM05D004515 ORTHO05D006013 3.5e-72 275.4 193 72.0
vmacro06973 Vaccinium macrocarpon HOM05D004515 ORTHO05D006013 3.5e-72 275.4 193 72.5
MELO3C008295.2 Cucumis melo HOM05D004515 ORTHO05D006013 1.3e-71 273.5 197 69.0
Gohir.A06G163900 Gossypium hirsutum HOM05D004515 ORTHO05D006013 1.3e-71 273.5 194 70.6
Sc11g0005040 Simmondsia chinensis HOM05D004515 ORTHO05D006013 1.3e-71 273.5 197 70.1
Sed0023990 Sechium edule HOM05D004515 ORTHO05D006013 1.7e-71 273.1 197 69.0
Prupe.2G249400 Prunus persica HOM05D004515 ORTHO05D006013 2.3e-71 272.7 191 73.3
Atru.chr12.26 Acer truncatum HOM05D004515 ORTHO05D006013 3.9e-71 271.9 191 71.7
QL08p063123 Quercus lobata HOM05D004515 ORTHO05D006013 3.9e-71 271.9 193 71.5
TWI09G1318 Tripterygium wilfordii HOM05D004515 ORTHO05D006013 3.9e-71 271.9 193 71.5
GSVIVG01032832001 Vitis vinifera HOM05D004515 ORTHO05D006013 3.9e-71 271.9 191 72.8
Gohir.D06G169400 Gossypium hirsutum HOM05D004515 ORTHO05D006013 5.1e-71 271.6 192 71.4
Cfa001324 Carpinus fangiana HOM05D004515 ORTHO05D006013 6.6e-71 271.2 193 71.5
PGR044G1178 Punica granatum HOM05D004515 ORTHO05D006013 6.6e-71 271.2 191 72.3
TPR.G16214 Trifolium pratense HOM05D004515 ORTHO05D006013 6.6e-71 271.2 193 71.0
Cpa.g.sc19.178 Carica papaya HOM05D004515 ORTHO05D006013 8.7e-71 270.8 193 73.1
Lj6g0019651 Lotus japonicus HOM05D004515 ORTHO05D006013 8.7e-71 270.8 193 71.0
Hma1.2p1_0703F.1_g206460 Hydrangea macrophylla HOM05D004515 ORTHO05D006013 1.9e-70 269.6 193 70.5
CsaV3_6G001820 Cucumis sativus L. HOM05D004515 ORTHO05D006013 2.5e-70 269.2 197 68.0
Lj1C955G2 Lonicera japonica HOM05D004515 ORTHO05D006013 2.5e-70 269.2 193 71.5
arahy.Tifrunner.gnm1.ann1.61SRII Arachis hypogaea HOM05D004515 ORTHO05D006013 3.3e-70 268.9 193 70.5
Haze_17221 Corylus avellana HOM05D004515 ORTHO05D006013 3.3e-70 268.9 190 72.1
Oeu025167.1 Olea europaea HOM05D004515 ORTHO05D006013 3.3e-70 268.9 198 68.2
COL.COLO4_25712 Corchorus olitorius HOM05D004515 ORTHO05D006013 4.3e-70 268.5 191 70.2
Phvul.001G242500 Phaseolus vulgaris HOM05D004515 ORTHO05D006013 4.3e-70 268.5 191 72.3
unitig_747.g21413 Utricularia gibba HOM05D004515 ORTHO05D006013 5.6e-70 268.1 193 69.9
arahy.Tifrunner.gnm1.ann1.RFU602 Arachis hypogaea HOM05D004515 ORTHO05D006013 7.3e-70 267.7 193 70.5
Hund13856 Selenicereus undatus HOM05D004515 ORTHO05D006013 7.3e-70 267.7 193 68.9
Ciclev10031189m.g Citrus clementina HOM05D004515 ORTHO05D006013 9.6e-70 267.3 198 71.2
Nitab4.5_0001171g0050 Nicotiana tabacum HOM05D004515 ORTHO05D006013 1.3e-69 266.9 193 68.9
Migut.F01384 Erythranthe guttata HOM05D004515 ORTHO05D006013 2.1e-69 266.2 193 67.4
Peaxi162Scf00825g00122 Petunia axillaris HOM05D004515 ORTHO05D006013 2.1e-69 266.2 193 67.9
SGA_v2.0_scaffold44G16693 Striga asiatica HOM05D004515 ORTHO05D006013 2.8e-69 265.8 193 67.4
Eucgr.J00216 Eucalyptus grandis HOM05D004515 ORTHO05D006013 3.6e-69 265.4 193 68.9
PSO339G0388 Papaver somniferum HOM05D004515 ORTHO05D006013 6.2e-69 264.6 193 67.9
PSO801G0853 Papaver somniferum HOM05D004515 ORTHO05D006013 1.1e-68 263.8 193 67.9
ATR0618G041 Amborella trichopoda HOM05D004515 ORTHO05D006013 1.4e-68 263.5 193 68.4
THA.LOC104810499 Tarenaya hassleriana HOM05D004515 ORTHO05D006013 1.4e-68 263.5 193 69.4
Nitab4.5_0003999g0010 Nicotiana tabacum HOM05D004515 ORTHO05D006013 1.8e-68 263.1 195 68.7
Solyc06g051730.4 Solanum lycopersicum HOM05D004515 ORTHO05D006013 1.8e-68 263.1 193 68.4
Sopen06g017680 Solanum pennellii HOM05D004515 ORTHO05D006013 1.8e-68 263.1 193 68.4
EL10Ac2g04822 Beta vulgaris HOM05D004515 ORTHO05D006013 3.1e-68 262.3 197 66.0
Ah.16g103480 Amaranthus hybridus HOM05D004515 ORTHO05D006013 4.0e-68 261.9 197 67.5
RcHm_v2.0_Chr1g0370101 Rosa chinensis HOM05D004515 ORTHO05D006013 4.0e-68 261.9 193 68.4
AUR62022874 Chenopodium quinoa HOM05D004515 ORTHO05D006013 6.9e-68 261.2 197 66.0
CDE02G2203 Ceratophyllum demersum HOM05D004515 ORTHO05D006013 9.0e-68 260.8 193 68.9
Duzib114G1023 Durio zibethinus HOM05D004515 ORTHO05D006013 9.0e-68 260.8 193 69.4
Oeu005845.1 Olea europaea HOM05D004515 ORTHO05D006013 9.0e-68 260.8 193 67.9
Psat5g126840 Pisum sativum HOM05D004515 ORTHO05D006013 1.2e-67 260.4 197 70.1
FAN01G2906 Fragaria x ananassa HOM05D004515 ORTHO05D006013 3.4e-67 258.8 197 67.5
Cc02_g06590 Coffea canephora HOM05D004515 ORTHO05D006013 4.4e-67 258.5 193 68.4
Aqoxy2G00906 Aquilegia oxysepala HOM05D004515 ORTHO05D006013 9.9e-67 257.3 190 67.9
FvH4_7g24400 Fragaria vesca HOM05D004515 ORTHO05D006013 9.9e-67 257.3 193 67.9
SalBow6G5289 Salvia bowleyana HOM05D004515 ORTHO05D006013 2.9e-66 255.8 193 64.8
HanXRQChr14g0459811 Helianthus annuus HOM05D004515 ORTHO05D006013 3.8e-66 255.4 194 64.9
Thhalv10016489m.g Eutrema salsugineum HOM05D004515 ORTHO05D006013 1.4e-65 253.4 193 66.3
MD01G1152400 Malus domestica HOM05D004515 ORTHO05D006013 1.9e-65 253.1 189 67.7
C04p07340 Brassica napus HOM05D004515 ORTHO05D006013 4.2e-65 251.9 200 64.0
BolC4t22357H Brassica oleracea HOM05D004515 ORTHO05D006013 4.2e-65 251.9 200 64.0
CARHR135050 Cardamine hirsuta HOM05D004515 ORTHO05D006013 4.2e-65 251.9 193 66.8
Sp4g22390 Schrenkiella parvula HOM05D004515 ORTHO05D006013 7.1e-65 251.1 193 65.8
BcaB02g09054 Brassica carinata HOM05D004515 ORTHO05D006013 1.2e-64 250.4 193 65.3
A05p06380 Brassica napus HOM05D004515 ORTHO05D006013 1.6e-64 250.0 193 65.3
MD07G1221400 Malus domestica HOM05D004515 ORTHO05D006013 1.6e-64 250.0 189 67.2
Actinidia29699 Actinidia chinensis HOM05D004515 ORTHO05D006013 2.1e-64 249.6 177 70.6
Aa31LG5G19520 Aethionema arabicum HOM05D004515 ORTHO05D006013 2.1e-64 249.6 193 65.3
Carub.0004s2225 Capsella rubella HOM05D004515 ORTHO05D006013 2.7e-64 249.2 193 65.3
FAN06G4539 Fragaria x ananassa HOM05D004515 ORTHO05D006013 2.7e-64 249.2 193 66.8
FAN10G4299 Fragaria x ananassa HOM05D000946 ORTHO05D006013 2.7e-64 249.2 197 66.0
Medtr3g070410 Medicago truncatula HOM05D004515 ORTHO05D006013 3.5e-64 248.8 197 66.0
Hund13854 Selenicereus undatus HOM05D004515 ORTHO05D006013 4.6e-64 248.4 191 66.0
AL4G37730 Arabidopsis lyrata HOM05D004515 ORTHO05D006013 6.0e-64 248.1 193 64.8
Lsat_1_v5_gn_5_153581 Lactuca sativa HOM05D004515 ORTHO05D006013 7.9e-64 247.7 193 62.2
AT2G40090 Arabidopsis thaliana HOM05D004515 ORTHO05D006013 1.0e-63 247.3 193 64.2
A03p22540 Brassica napus HOM05D004515 ORTHO05D006013 1.5e-62 243.4 193 63.2
C03p26690 Brassica napus HOM05D004515 ORTHO05D006013 1.5e-62 243.4 193 63.2
BraA05t19606Z Brassica rapa HOM05D004515 ORTHO05D006013 1.5e-62 243.4 191 66.0
HanXRQChr08g0222111 Helianthus annuus HOM05D004515 ORTHO05D006013 3.1e-60 235.7 191 61.8
CSS0009607 Camellia sinensis var. sinensis HOM05D004515 ORTHO05D006013 1.7e-58 229.9 158 72.2
ECA238G3319 Erigeron canadensis HOM05D004515 ORTHO05D006013 1.7e-58 229.9 155 71.6
CSS0001103 Camellia sinensis var. sinensis HOM05D004515 ORTHO05D006013 8.4e-58 227.6 153 73.9
Lsat_1_v5_gn_8_12281 Lactuca sativa HOM05D004515 ORTHO05D006013 2.7e-56 222.6 191 59.2
ClCG11G006170 Citrullus lanatus HOM05D004515 ORTHO05D006013 3.5e-56 222.2 137 76.6
DCAR_024830 Daucus carota HOM05D004515 ORTHO05D006013 3.9e-55 218.8 133 78.2
AUR62012243 Chenopodium quinoa HOM05D004515 ORTHO05D006013 1.1e-54 217.2 132 76.5
SMO266G0006 Selaginella moellendorffii HOM05D004515 ORTHO05D006013 4.6e-48 195.3 190 52.1
Pp3c22_5080 Physcomitrium patens HOM05D004515 ORTHO05D006013 4.3e-46 188.7 193 51.3
CDE04G3525 Ceratophyllum demersum HOM05D004515 ORTHO05D006013 3.1e-44 182.6 193 50.8
CBR_g58691 Chara braunii HOM05D004515 ORTHO05D006013 3.1e-44 182.6 188 48.4
Ca_15120_v3 Cicer arietinum L. HOM05D004515 ORTHO05D006013 1.4e-41 173.7 102 81.4
ECA233G1018 Erigeron canadensis HOM05D000093 ORTHO05D006013 3.3e-38 162.5 172 50.0
Dinv10627 Davidia involucrata HOM05D004515 ORTHO05D006013 3.7e-37 159.1 94 76.6
Os03g0698350 Oryza sativa ssp. japonica HOM05D004515 ORTHO05D006013 6.9e-36 154.8 91 79.1
FAN06G0292 Fragaria x ananassa HOM05D004515 ORTHO05D006013 2.6e-35 152.9 93 75.3
Eucgr.J00212 Eucalyptus grandis HOM05D004515 ORTHO05D006013 4.5e-35 152.1 128 64.1
BcaB01g03589 Brassica carinata HOM05D004515 ORTHO05D006013 2.7e-32 142.9 128 60.2
BcaC01g05436 Brassica carinata HOM05D004515 ORTHO05D006013 2.7e-32 142.9 128 60.2
Duzib068G0254 Durio zibethinus HOM05D004515 ORTHO05D006013 7.9e-32 141.4 91 70.3
HanXRQChr14g0459791 Helianthus annuus HOM05D004515 ORTHO05D006013 1.3e-29 134.0 84 69.0
Cre10.g428150 Chlamydomonas reinhardtii HOM05D004515 ORTHO05D006013 5.3e-28 128.6 148 45.3
SEGI_04270 Sequoiadendron giganteum HOM05D004515 ORTHO05D006013 1.8e-23 113.6 69 72.5
Haze_26396 Corylus avellana HOM05D000290 ORTHO05D006013 3.7e-21 105.9 181 33.7
BraA03t11480Z Brassica rapa HOM05D004515 ORTHO05D006013 3.8e-18 95.9 69 63.8
SEGI_31356 Sequoiadendron giganteum HOM05D004515 ORTHO05D006013 3.7e-13 79.3 72 66.7
BcaB01g03588 Brassica carinata HOM05D004515 ORTHO05D006013 2.7e-11 73.2 44 70.5
BcaC01g05435 Brassica carinata HOM05D004515 ORTHO05D006013 2.7e-11 73.2 44 70.5
Mapoly0097s0048 Marchantia polymorpha HOM05D000290 ORTHO05D006676 3.2e-09 66.2 206 28.6
SMO365G0022 Selaginella moellendorffii HOM05D000290 ORTHO05D006676 7.2e-09 65.1 124 34.7
ATR0598G192 Amborella trichopoda HOM05D000290 ORTHO05D006676 9.4e-09 64.7 120 35.0
Cfa022329 Carpinus fangiana HOM05D000290 ORTHO05D006013 9.4e-09 64.7 152 31.6
MCO16G390 Micromonas commoda HOM05D000290 ORTHO05D006013 2.1e-08 63.5 124 33.1
Gohir.D07G175800 Gossypium hirsutum HOM05D000290 ORTHO05D006676 1.4e-07 60.8 205 27.3
Gorai.001G196700 Gossypium raimondii HOM05D000290 ORTHO05D006676 1.4e-07 60.8 205 27.3
CiPaw.04G048800 Carya illinoinensis HOM05D000290 ORTHO05D006676 1.8e-07 60.5 194 29.4
CBR_g48308 Chara braunii HOM05D000290 ORTHO05D006676 2.3e-07 60.1 125 34.4
Eucgr.J01633 Eucalyptus grandis HOM05D004515 ORTHO05D006676 5.2e-07 58.9 128 29.7
CANSAT01G1953 Cannabis sativa HOM05D000290 ORTHO05D006676 6.8e-07 58.5 189 29.1
Pp3c13_6150 Physcomitrium patens HOM05D000290 ORTHO05D006676 8.8e-07 58.2 135 29.6
Aqoxy3G04138_Aqoxy3G04139 Aquilegia oxysepala HOM05D000290 ORTHO05D006676 1.5e-06 57.4 130 31.5
Aqoxy514s002 Aquilegia oxysepala HOM05D004515 ORTHO05D006676 1.5e-06 57.4 130 31.5
PGR042G1712 Punica granatum HOM05D000290 ORTHO05D006676 1.5e-06 57.4 124 34.7
Gohir.A07G169400 Gossypium hirsutum HOM05D000290 ORTHO05D006676 2.0e-06 57.0 207 26.1
Sabra04G0049700 Salix brachista HOM05D000290 ORTHO05D006676 2.0e-06 57.0 125 33.6
Nn4g24663 Nelumbo nucifera HOM05D000290 ORTHO05D006676 2.6e-06 56.6 125 32.0
Os11g0549635 Oryza sativa ssp. japonica HOM05D000290 ORTHO05D006676 3.4e-06 56.2 126 33.3
TWI74G0971 Tripterygium wilfordii HOM05D000290 ORTHO05D006676 3.4e-06 56.2 123 31.7
HanXRQChr09g0259791 Helianthus annuus HOM05D000290 ORTHO05D006676 4.4e-06 55.8 130 30.8
AUR62018236 Chenopodium quinoa HOM05D000290 ORTHO05D006676 7.5e-06 55.1 127 31.5
Cc07_g12870 Coffea canephora HOM05D000290 ORTHO05D006676 7.5e-06 55.1 126 31.7


User provided reference genes

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