Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_027992 Vanilla planifolia HOM05D006367 ORTHO05D007942 4.0e-198 694.5 335 100.0
Nn5g28853 Nelumbo nucifera HOM05D006367 ORTHO05D007942 5.2e-73 278.9 245 56.7
DCAR_011462 Daucus carota HOM05D006367 ORTHO05D007942 5.8e-72 275.4 244 53.7
Manes.12G144300 Manihot esculenta HOM05D006367 ORTHO05D007942 2.2e-71 273.5 221 59.7
COL.COLO4_10985 Corchorus olitorius HOM05D006367 ORTHO05D007942 1.1e-70 271.2 232 57.8
RcHm_v2.0_Chr2g0117401 Rosa chinensis HOM05D006367 ORTHO05D007942 2.4e-70 270.0 242 55.0
MBI04_g33338_MAGBIO Magnolia biondii HOM05D006367 ORTHO05D007942 4.1e-70 269.2 218 57.3
Gohir.A02G136100 Gossypium hirsutum HOM05D006367 ORTHO05D007942 1.6e-69 267.3 219 60.7
TAR625G1249 Trochodendron aralioides HOM05D006367 ORTHO05D007942 1.6e-69 267.3 213 58.2
Zm00001eb361490 Zea mays HOM05D006367 ORTHO05D007942 2.1e-69 266.9 245 54.3
FAN23G0352 Fragaria x ananassa HOM05D006367 ORTHO05D007942 2.7e-69 266.5 242 55.4
Potri.005G085800 Populus trichocarpa HOM05D006367 ORTHO05D007942 2.7e-69 266.5 221 57.0
Prupe.6G168900 Prunus persica HOM05D006367 ORTHO05D007942 2.7e-69 266.5 219 59.8
Sopen04g022980 Solanum pennellii HOM05D006367 ORTHO05D007942 3.5e-69 266.2 271 51.7
RcHm_v2.0_Chr2g0117461 Rosa chinensis HOM05D006367 ORTHO05D007942 6.0e-69 265.4 213 59.2
Sabra05G0070700 Salix brachista HOM05D006367 ORTHO05D007942 6.0e-69 265.4 226 56.2
Duzib187G0980 Durio zibethinus HOM05D006367 ORTHO05D007942 7.8e-69 265.0 233 57.9
Gorai.003G048000 Gossypium raimondii HOM05D006367 ORTHO05D007942 7.8e-69 265.0 219 60.3
Os01g0716400 Oryza sativa ssp. japonica HOM05D006367 ORTHO05D007942 7.8e-69 265.0 215 58.6
Thecc.01G115500 Theobroma cacao HOM05D006367 ORTHO05D007942 7.8e-69 265.0 233 57.5
MD10G1028700 Malus domestica HOM05D006367 ORTHO05D007942 1.0e-68 264.6 230 55.7
QL06p031689 Quercus lobata HOM05D006367 ORTHO05D007942 1.7e-68 263.8 213 59.2
FAN26G2292 Fragaria x ananassa HOM05D006367 ORTHO05D007942 3.0e-68 263.1 242 54.1
Eucgr.I00312 Eucalyptus grandis HOM05D006367 ORTHO05D007942 3.9e-68 262.7 233 55.4
Solyc04g051610.3 Solanum lycopersicum HOM05D006367 ORTHO05D007942 5.1e-68 262.3 271 51.7
FAN19G1918 Fragaria x ananassa HOM05D006367 ORTHO05D007942 6.6e-68 261.9 242 54.1
Rhsim10G0148300 Rhododendron simsii HOM05D006367 ORTHO05D007942 6.6e-68 261.9 222 55.9
Aqoxy6G00434 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 1.5e-67 260.8 230 54.8
CANSAT21G2601 Cannabis sativa HOM05D006367 ORTHO05D007942 7.3e-67 258.5 223 56.5
CiPaw.04G090000 Carya illinoinensis HOM05D006367 ORTHO05D007942 7.3e-67 258.5 213 58.7
Cc04_g11230 Coffea canephora HOM05D006367 ORTHO05D007942 7.3e-67 258.5 223 57.8
Oeu028362.1 Olea europaea HOM05D006367 ORTHO05D007942 7.3e-67 258.5 236 55.5
Cc07_g16470 Coffea canephora HOM05D006367 ORTHO05D007942 1.2e-66 257.7 223 57.4
Cfa002770 Carpinus fangiana HOM05D006367 ORTHO05D007942 1.6e-66 257.3 212 59.9
Haze_25063 Corylus avellana HOM05D006367 ORTHO05D007942 4.7e-66 255.8 212 59.4
PSO675G5206 Papaver somniferum HOM05D006367 ORTHO05D007942 4.7e-66 255.8 214 54.7
TWI75G1400 Tripterygium wilfordii HOM05D006367 ORTHO05D007942 6.2e-66 255.4 242 52.5
Sc14g0009250 Simmondsia chinensis HOM05D006367 ORTHO05D007942 1.4e-65 254.2 215 56.7
MSTRG.23307 Avicennia marina HOM05D006367 ORTHO05D007942 1.8e-65 253.8 230 56.5
Nitab4.5_0000184g0160 Nicotiana tabacum HOM05D006367 ORTHO05D007942 1.8e-65 253.8 281 49.1
Atru.chr7.1822 Acer truncatum HOM05D006367 ORTHO05D007942 2.4e-65 253.4 223 56.1
arahy.Tifrunner.gnm1.ann1.511U58 Arachis hypogaea HOM05D006367 ORTHO05D007942 3.1e-65 253.1 225 53.8
PGSC0003DMG400023291 Solanum tuberosum HOM05D006367 ORTHO05D007942 3.1e-65 253.1 255 51.8
Ciclev10025312m.g Citrus clementina HOM05D006367 ORTHO05D007942 4.0e-65 252.7 221 52.5
Thhalv10000126m.g Eutrema salsugineum HOM05D006367 ORTHO05D007942 6.8e-65 251.9 222 56.3
Nitab4.5_0009050g0050 Nicotiana tabacum HOM05D006367 ORTHO05D007942 6.8e-65 251.9 258 51.2
arahy.Tifrunner.gnm1.ann1.GSD986 Arachis hypogaea HOM05D006367 ORTHO05D007942 1.2e-64 251.1 225 53.3
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 1.5e-64 250.8 229 54.1
PGR004G1961 Punica granatum HOM05D006367 ORTHO05D007942 1.5e-64 250.8 229 55.5
VMungo0251G2542 Vigna mungo HOM05D006367 ORTHO05D007942 1.5e-64 250.8 225 52.9
AT2G21860 Arabidopsis thaliana HOM05D006367 ORTHO05D007942 2.0e-64 250.4 222 56.3
Carub.0004s0089 Capsella rubella HOM05D006367 ORTHO05D007942 4.4e-64 249.2 212 56.1
SalBow6G4439 Salvia bowleyana HOM05D006367 ORTHO05D007942 5.8e-64 248.8 219 52.5
SGA_v2.0_scaffold2G01287 Striga asiatica HOM05D006367 ORTHO05D007942 7.6e-64 248.4 227 53.3
THA.LOC104807726 Tarenaya hassleriana HOM05D006367 ORTHO05D007942 7.6e-64 248.4 219 53.9
Migut.H02447 Erythranthe guttata HOM05D006367 ORTHO05D007942 9.9e-64 248.1 240 51.7
CARHR112860 Cardamine hirsuta HOM05D006367 ORTHO05D007942 2.2e-63 246.9 222 55.9
Aa31LG7G14760 Aethionema arabicum HOM05D006367 ORTHO05D007942 6.4e-63 245.4 210 56.2
Hma1.2p1_0696F.1_g204650 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 1.1e-62 244.6 219 57.1
Hund02300 Selenicereus undatus HOM05D006367 ORTHO05D007942 1.9e-62 243.8 255 49.4
BcaB06g27790 Brassica carinata HOM05D006367 ORTHO05D007942 2.4e-62 243.4 216 55.1
EL10Ac7g17324 Beta vulgaris HOM05D006367 ORTHO05D007942 3.2e-62 243.0 213 54.0
CDE04G0187 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 3.2e-62 243.0 224 49.1
BcaC02g08760 Brassica carinata HOM05D006367 ORTHO05D007942 4.1e-62 242.7 210 54.3
C04p50960 Brassica napus HOM05D006367 ORTHO05D007942 4.1e-62 242.7 210 54.3
AL4G11170 Arabidopsis lyrata HOM05D006367 ORTHO05D007942 1.2e-61 241.1 220 54.5
ECA240G4594 Erigeron canadensis HOM05D006367 ORTHO05D007942 3.5e-61 239.6 239 50.6
MELO3C034581.2 Cucumis melo HOM05D006367 ORTHO05D007942 4.6e-61 239.2 213 54.9
Dinv42673 Davidia involucrata HOM05D006367 ORTHO05D007942 4.6e-61 239.2 220 53.6
Psat7g050440 Pisum sativum HOM05D006367 ORTHO05D007942 4.6e-61 239.2 260 47.3
Sp4g00950 Schrenkiella parvula HOM05D006367 ORTHO05D007942 7.8e-61 238.4 218 52.3
AUR62040525 Chenopodium quinoa HOM05D006367 ORTHO05D007942 1.3e-60 237.7 259 48.3
A04p16450 Brassica napus HOM05D006367 ORTHO05D007942 1.7e-60 237.3 210 53.3
BraA04t17280Z Brassica rapa HOM05D006367 ORTHO05D007942 1.7e-60 237.3 210 53.3
AUR62039784 Chenopodium quinoa HOM05D006367 ORTHO05D007942 2.3e-60 236.9 257 47.5
HanXRQChr03g0078741 Helianthus annuus HOM05D006367 ORTHO05D007942 1.1e-59 234.6 252 47.6
ATR1120G154 Amborella trichopoda HOM05D006367 ORTHO05D007942 5.6e-59 232.3 217 51.2
Lsat_1_v5_gn_5_44981 Lactuca sativa HOM05D006367 ORTHO05D007942 1.2e-58 231.1 253 47.8
Peaxi162Scf00106g01216 Petunia axillaris HOM05D006367 ORTHO05D007942 1.3e-55 221.1 245 47.8
Hma1.2p1_0696F.1_g204660 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 6.4e-55 218.8 188 56.9
CARHR112850 Cardamine hirsuta HOM05D006367 ORTHO05D007942 8.4e-55 218.4 212 50.9
Lalb_Chr07g0184731 Lupinus albus HOM05D006367 ORTHO05D007942 8.4e-55 218.4 254 46.1
Glyma.05G184900 Glycine max HOM05D006367 ORTHO05D007942 1.9e-54 217.2 225 48.0
Lj4g0025161 Lotus japonicus HOM05D006367 ORTHO05D007942 1.9e-54 217.2 226 47.8
ClCG02G000950 Citrullus lanatus HOM05D006367 ORTHO05D007942 5.4e-54 215.7 217 50.2
CDE06G2209 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 9.3e-54 214.9 189 54.0
unitig_899.g14612 Utricularia gibba HOM05D006367 ORTHO05D007942 7.8e-53 211.8 191 54.5
Actinidia05379 Actinidia chinensis HOM05D006367 ORTHO05D007942 3.9e-52 209.5 174 56.3
CsaV3_2G017740 Cucumis sativus L. HOM05D006367 ORTHO05D007942 5.1e-52 209.1 217 50.2
Phvul.002G265800 Phaseolus vulgaris HOM05D006367 ORTHO05D007942 5.1e-52 209.1 225 45.8
Ca_17687_v3 Cicer arietinum L. HOM05D006367 ORTHO05D007942 6.6e-52 208.8 213 48.4
MELO3C020965.2 Cucumis melo HOM05D006367 ORTHO05D007942 1.1e-51 208.0 214 49.5
RcHm_v2.0_Chr2g0117441 Rosa chinensis HOM05D006367 ORTHO05D007942 2.5e-51 206.8 203 52.2
CAN.G1044.2 Capsicum annuum HOM05D006367 ORTHO05D007942 4.3e-51 206.1 249 46.6
Glyma.08G142900 Glycine max HOM05D006367 ORTHO05D007942 5.6e-51 205.7 249 44.6
CSS0012231 Camellia sinensis var. sinensis HOM05D006367 ORTHO05D007942 7.3e-51 205.3 174 55.2
Medtr8g092050 Medicago truncatula HOM05D006367 ORTHO05D007942 1.3e-50 204.5 214 47.7
FvH4_1g22940 Fragaria vesca HOM05D006367 ORTHO05D007942 6.2e-50 202.2 203 52.2
TPR.G2178 Trifolium pratense HOM05D006367 ORTHO05D007942 6.2e-50 202.2 213 46.9
HPP92_006456 Vanilla planifolia HOM05D006367 ORTHO05D007942 3.1e-49 199.9 101 97.0
Gohir.D03G046900 Gossypium hirsutum HOM05D006367 ORTHO05D007942 2.2e-47 193.7 154 62.3
Eucgr.L02754 Eucalyptus grandis HOM05D006367 ORTHO05D007942 9.3e-46 188.3 227 44.5
SMO367G0721 Selaginella moellendorffii HOM05D006367 ORTHO05D007942 3.9e-44 183.0 213 43.7
Sed0027379 Sechium edule HOM05D006367 ORTHO05D007942 2.1e-42 177.2 152 57.2
Lj4P863T60 Lonicera japonica HOM05D006367 ORTHO05D007942 9.9e-40 168.3 201 45.3
Pp3c8_810 Physcomitrium patens HOM05D006367 ORTHO05D007942 2.9e-39 166.8 239 36.0
AagrBONN_evm.TU.Sc2ySwM_344.2769 Anthoceros agrestis HOM05D006367 ORTHO05D007942 8.7e-36 155.2 241 35.3
Nitab4.5_0005102g0010 Nicotiana tabacum HOM05D006367 ORTHO05D007942 7.6e-32 142.1 197 41.1
GSVIVG01022252001 Vitis vinifera HOM05D006367 ORTHO05D007942 2.5e-30 137.1 144 49.3
CBR_g8843 Chara braunii HOM05D006367 ORTHO05D007942 5.1e-28 129.4 302 30.5
PGSC0003DMG400020963 Solanum tuberosum HOM05D006367 ORTHO05D007942 4.1e-25 119.8 126 50.8
AagrBONN_evm.TU.Sc2ySwM_344.1355 Anthoceros agrestis HOM05D006367 ORTHO05D007942 3.2e-22 110.2 224 29.0
Cre09.g388060 Chlamydomonas reinhardtii HOM05D006367 ORTHO05D007942 1.2e-21 108.2 225 31.1
PGSC0003DMG400004546 Solanum tuberosum HOM05D006367 ORTHO05D007942 2.5e-19 100.5 171 34.5
vmacro12891 Vaccinium macrocarpon HOM05D006367 ORTHO05D007942 2.7e-13 80.5 83 47.0
CARHR293120 Cardamine hirsuta HOM05D006367 ORTHO05D007942 3.9e-12 76.6 88 45.5
BolC4t26688H Brassica oleracea HOM05D002293 ORTHO05D005475 9.7e-11 72.0 54 55.6
MCO11G553 Micromonas commoda HOM05D006367 ORTHO05D007942 2.9e-07 60.5 236 23.7
CARHR034070 Cardamine hirsuta HOM05D006367 ORTHO05D007942 5.0e-07 59.7 95 40.0


User provided reference genes

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