Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_027704 Vanilla planifolia HOM05D003483 ORTHO05D004101 5.9e-83 310.8 158 100.0
arahy.Tifrunner.gnm1.ann1.19GFYA Arachis hypogaea HOM05D003483 ORTHO05D004101 1.8e-23 113.2 204 38.2
PSO170G3925 Papaver somniferum HOM05D003483 ORTHO05D004101 1.8e-23 113.2 154 44.8
HPP92_011153 Vanilla planifolia HOM05D003483 ORTHO05D004101 1.2e-22 110.5 64 89.1
Duzib132G0067 Durio zibethinus HOM05D003483 ORTHO05D004101 2.6e-22 109.4 210 37.1
MBI03_g28296_MAGBIO Magnolia biondii HOM05D003483 ORTHO05D004101 2.2e-21 106.3 203 36.5
PGR142G0005 Punica granatum HOM05D003483 ORTHO05D004101 8.3e-21 104.4 228 33.8
Lj9A307T41 Lonicera japonica HOM05D003483 ORTHO05D004101 1.4e-20 103.6 206 33.5
Peaxi162Scf00011g00242 Petunia axillaris HOM05D003483 ORTHO05D004101 1.9e-20 103.2 193 36.8
TAR381G1595 Trochodendron aralioides HOM05D003483 ORTHO05D004101 2.4e-20 102.8 199 36.2
AUR62017510 Chenopodium quinoa HOM05D003483 ORTHO05D004101 3.2e-20 102.4 181 37.0
ATR0684G013 Amborella trichopoda HOM05D003483 ORTHO05D004101 4.1e-20 102.1 195 34.4
Haze_01648 Corylus avellana HOM05D003483 ORTHO05D004101 4.1e-20 102.1 183 37.7
HanXRQChr06g0185051 Helianthus annuus HOM05D003483 ORTHO05D004101 4.1e-20 102.1 248 31.5
Nn1g08607 Nelumbo nucifera HOM05D003483 ORTHO05D004101 5.4e-20 101.7 170 39.4
Hma1.2p1_0557F.1_g178380 Hydrangea macrophylla HOM05D003483 ORTHO05D004101 7.0e-20 101.3 252 31.7
COL.COLO4_17881 Corchorus olitorius HOM05D003483 ORTHO05D004101 9.2e-20 100.9 192 35.9
CDE02G1133 Ceratophyllum demersum HOM05D003483 ORTHO05D004101 1.2e-19 100.5 193 35.2
Dinv19357 Davidia involucrata HOM05D003483 ORTHO05D004101 1.2e-19 100.5 218 33.5
Psat1g224560 Pisum sativum HOM05D003483 ORTHO05D004101 1.2e-19 100.5 232 34.1
PGR142G1721 Punica granatum HOM05D003483 ORTHO05D004101 1.6e-19 100.1 199 35.7
SalBow6G5065 Salvia bowleyana HOM05D003483 ORTHO05D004101 2.0e-19 99.8 232 32.8
SalBow6G7249 Salvia bowleyana HOM05D003483 ORTHO05D004101 2.0e-19 99.8 232 32.8
PSO017G4111 Papaver somniferum HOM05D003483 ORTHO05D004101 4.6e-19 98.6 244 32.0
Migut.N01039 Erythranthe guttata HOM05D003483 ORTHO05D004101 6.0e-19 98.2 260 30.8
Glyma.08G185800 Glycine max HOM05D003483 ORTHO05D004101 6.0e-19 98.2 228 32.5
Phvul.006G213100 Phaseolus vulgaris HOM05D003483 ORTHO05D004101 1.0e-18 97.4 202 33.7
arahy.Tifrunner.gnm1.ann1.021TT5 Arachis hypogaea HOM05D003483 ORTHO05D004101 1.3e-18 97.1 195 34.4
Cc02_g22350 Coffea canephora HOM05D003483 ORTHO05D004101 1.3e-18 97.1 217 34.1
CANSAT11G2020 Cannabis sativa HOM05D003483 ORTHO05D004101 1.7e-18 96.7 226 32.7
Gohir.A01G177800 Gossypium hirsutum HOM05D003483 ORTHO05D004101 1.7e-18 96.7 222 33.8
VMungo0540G1714 Vigna mungo HOM05D003483 ORTHO05D004101 1.7e-18 96.7 228 31.6
Cc02_g22380 Coffea canephora HOM05D003483 ORTHO05D004101 2.3e-18 96.3 192 34.4
Glyma.15G047700 Glycine max HOM05D003483 ORTHO05D004101 2.3e-18 96.3 209 33.0
unitig_699.g19861 Utricularia gibba HOM05D003483 ORTHO05D004101 2.3e-18 96.3 197 34.0
arahy.Tifrunner.gnm1.ann1.MUYK2J Arachis hypogaea HOM05D003483 ORTHO05D004101 3.0e-18 95.9 178 36.0
FvH4_5g29660 Fragaria vesca HOM05D003483 ORTHO05D004101 3.0e-18 95.9 191 35.1
FAN18G3047 Fragaria x ananassa HOM05D003483 ORTHO05D004101 3.0e-18 95.9 191 35.1
vmacro01768 Vaccinium macrocarpon HOM05D003483 ORTHO05D004101 3.0e-18 95.9 189 33.3
Ca_00080_v3 Cicer arietinum L. HOM05D003483 ORTHO05D004101 3.9e-18 95.5 233 33.0
Medtr2g007300 Medicago truncatula HOM05D003483 ORTHO05D004101 3.9e-18 95.5 206 33.5
GSVIVG01022995001 Vitis vinifera HOM05D003483 ORTHO05D004101 3.9e-18 95.5 229 32.8
MELO3C010097.2 Cucumis melo HOM05D003483 ORTHO05D004101 5.0e-18 95.1 205 33.7
Nn1g08897 Nelumbo nucifera HOM05D003483 ORTHO05D004101 6.6e-18 94.7 192 36.5
GSVIVG01022998001 Vitis vinifera HOM05D003483 ORTHO05D004101 6.6e-18 94.7 190 35.3
CSS0026849 Camellia sinensis var. sinensis HOM05D003483 ORTHO05D004101 8.6e-18 94.4 227 31.7
CsaV3_1G045010 Cucumis sativus L. HOM05D003483 ORTHO05D004101 8.6e-18 94.4 205 33.7
Manes.07G014600 Manihot esculenta HOM05D003483 ORTHO05D004101 8.6e-18 94.4 191 35.1
Potri.003G020700 Populus trichocarpa HOM05D003483 ORTHO05D004101 8.6e-18 94.4 189 34.4
Actinidia39049 Actinidia chinensis HOM05D003483 ORTHO05D004101 1.1e-17 94.0 210 30.5
MD15G1421500 Malus domestica HOM05D003483 ORTHO05D004101 1.1e-17 94.0 202 32.2
Thecc.02G039900 Theobroma cacao HOM05D003483 ORTHO05D004101 1.1e-17 94.0 201 33.8
arahy.Tifrunner.gnm1.ann1.G5V2PN Arachis hypogaea HOM05D003483 ORTHO05D004101 1.5e-17 93.6 199 33.2
Gorai.012G160700 Gossypium raimondii HOM05D003483 ORTHO05D004101 1.5e-17 93.6 192 33.9
Nitab4.5_0003819g0040 Nicotiana tabacum HOM05D003483 ORTHO05D004101 1.5e-17 93.6 194 35.1
TPR.G2131 Trifolium pratense HOM05D003483 ORTHO05D004101 1.5e-17 93.6 248 30.2
Lj6g0009955 Lotus japonicus HOM05D003483 ORTHO05D004101 1.9e-17 93.2 242 31.0
SGA_v2.0_scaffold145G36069 Striga asiatica HOM05D003483 ORTHO05D004101 1.9e-17 93.2 256 30.5
FAN13G0976 Fragaria x ananassa HOM05D003483 ORTHO05D004101 2.5e-17 92.8 191 34.6
Nitab4.5_0002245g0170 Nicotiana tabacum HOM05D003483 ORTHO05D004101 2.5e-17 92.8 194 35.1
Potri.001G209600 Populus trichocarpa HOM05D003483 ORTHO05D004101 2.5e-17 92.8 190 35.8
RcHm_v2.0_Chr7g0222941 Rosa chinensis HOM05D003483 ORTHO05D004101 2.5e-17 92.8 191 34.6
Haze_01644 Corylus avellana HOM05D003483 ORTHO05D004101 3.3e-17 92.4 208 33.2
DCAR_021518 Daucus carota HOM05D003483 ORTHO05D004101 3.3e-17 92.4 205 31.2
Glyma.15G047000 Glycine max HOM05D003483 ORTHO05D004101 3.3e-17 92.4 189 33.3
Sabra01G0161900 Salix brachista HOM05D003483 ORTHO05D004101 3.3e-17 92.4 190 35.3
FAN04G0580 Fragaria x ananassa HOM05D003483 ORTHO05D004101 4.3e-17 92.0 192 34.4
Gorai.002G209300 Gossypium raimondii HOM05D003483 ORTHO05D004101 4.3e-17 92.0 191 34.6
PGSC0003DMG400023753 Solanum tuberosum HOM05D003483 ORTHO05D004101 4.3e-17 92.0 194 34.5
CAN.G1577.5 Capsicum annuum HOM05D003483 ORTHO05D004101 5.6e-17 91.7 231 31.2
QL02p098396 Quercus lobata HOM05D003483 ORTHO05D004101 5.6e-17 91.7 215 33.0
Sed0016447 Sechium edule HOM05D003483 ORTHO05D004101 5.6e-17 91.7 200 34.5
Thecc.02G039800 Theobroma cacao HOM05D003483 ORTHO05D004101 7.3e-17 91.3 191 34.6
TAR376G1167 Trochodendron aralioides HOM05D003483 ORTHO05D004101 7.3e-17 91.3 47 85.1
VMungo0540G0086 Vigna mungo HOM05D003483 ORTHO05D004101 7.3e-17 91.3 225 31.1
Gohir.A04G126900 Gossypium hirsutum HOM05D003483 ORTHO05D004101 9.5e-17 90.9 191 33.5
Solyc11g044530.2 Solanum lycopersicum HOM05D003483 ORTHO05D004101 1.6e-16 90.1 231 30.3
Zm00001eb054390 Zea mays HOM05D003483 ORTHO05D004101 1.6e-16 90.1 45 86.7
Glyma.08G185000 Glycine max HOM05D003483 ORTHO05D004101 2.1e-16 89.7 253 30.0
Manes.07G014500 Manihot esculenta HOM05D003483 ORTHO05D004101 2.1e-16 89.7 190 34.2
Atru.chr6.836 Acer truncatum HOM05D003483 ORTHO05D004101 2.8e-16 89.4 191 34.0
Medtr2g007640 Medicago truncatula HOM05D003483 ORTHO05D004101 2.8e-16 89.4 195 32.3
Phvul.006G214200 Phaseolus vulgaris HOM05D003483 ORTHO05D004101 2.8e-16 89.4 191 34.0
TWI59G0966 Tripterygium wilfordii HOM05D003483 ORTHO05D004101 2.8e-16 89.4 190 33.7
Eucgr.I02715 Eucalyptus grandis HOM05D003483 ORTHO05D004101 3.6e-16 89.0 45 86.7
Cfa005534 Carpinus fangiana HOM05D003483 ORTHO05D004101 4.7e-16 88.6 45 82.2
Gohir.D01G168600 Gossypium hirsutum HOM05D003483 ORTHO05D004101 4.7e-16 88.6 191 34.0
MD15G1421400 Malus domestica HOM05D003483 ORTHO05D004101 4.7e-16 88.6 208 32.7
QL02p098403 Quercus lobata HOM05D003483 ORTHO05D004101 4.7e-16 88.6 203 33.0
Rhsim11G0130100 Rhododendron simsii HOM05D003483 ORTHO05D004101 6.2e-16 88.2 210 31.0
CAN.G336.10 Capsicum annuum HOM05D003483 ORTHO05D004101 8.1e-16 87.8 257 30.0
ClCG09G014000 Citrullus lanatus HOM05D003483 ORTHO05D004101 8.1e-16 87.8 47 83.0
CSS0010590 Camellia sinensis var. sinensis HOM05D003483 ORTHO05D004101 1.1e-15 87.4 46 80.4
CSS0047210 Camellia sinensis var. sinensis HOM05D003483 ORTHO05D004101 1.1e-15 87.4 46 80.4
TPR.G22934 Trifolium pratense HOM05D003483 ORTHO05D004101 1.1e-15 87.4 46 80.4
Ciclev10002308m.g Citrus clementina HOM05D003483 ORTHO05D004101 1.4e-15 87.0 45 82.2
Nitab4.5_0000044g0170 Nicotiana tabacum HOM05D003483 ORTHO05D004101 1.4e-15 87.0 47 83.0
Nitab4.5_0001783g0130 Nicotiana tabacum HOM05D003483 ORTHO05D004101 1.4e-15 87.0 47 83.0
Peaxi162Scf00152g01330 Petunia axillaris HOM05D003483 ORTHO05D004101 1.4e-15 87.0 47 83.0
Hund01591 Selenicereus undatus HOM05D003483 ORTHO05D004101 2.3e-15 86.3 229 32.8
PGSC0003DMG400033698 Solanum tuberosum HOM05D003483 ORTHO05D004101 2.3e-15 86.3 47 80.9
TPR.G2065 Trifolium pratense HOM05D003483 ORTHO05D004101 2.3e-15 86.3 48 77.1
CiPaw.05G043400 Carya illinoinensis HOM05D003483 ORTHO05D004101 5.2e-15 85.1 47 80.9
Eucgr.I02716 Eucalyptus grandis HOM05D003483 ORTHO05D004101 5.2e-15 85.1 214 32.2
Gohir.D04G171800 Gossypium hirsutum HOM05D003483 ORTHO05D004101 5.2e-15 85.1 183 34.4
Os03g0704100 Oryza sativa ssp. japonica HOM05D003483 ORTHO05D004101 5.2e-15 85.1 45 82.2
vmacro19900 Vaccinium macrocarpon HOM05D003483 ORTHO05D004101 5.2e-15 85.1 46 82.6
Aqoxy5G02410 Aquilegia oxysepala HOM05D003483 ORTHO05D004101 6.8e-15 84.7 254 29.1
Ca_00085_v3 Cicer arietinum L. HOM05D003483 ORTHO05D004101 6.8e-15 84.7 45 77.8
Sabra03G0012000 Salix brachista HOM05D003483 ORTHO05D004101 6.8e-15 84.7 44 84.1
HanXRQChr03g0066831 Helianthus annuus HOM05D003483 ORTHO05D004101 1.5e-14 83.6 188 32.4
Sopen01g046760 Solanum pennellii HOM05D003483 ORTHO05D004101 2.0e-14 83.2 45 82.2
Hma1.2p1_0217F.1_g091970 Hydrangea macrophylla HOM05D003483 ORTHO05D004101 2.6e-14 82.8 45 80.0
Lsat_1_v5_gn_9_118240 Lactuca sativa HOM05D003483 ORTHO05D004101 2.6e-14 82.8 246 30.9
RcHm_v2.0_Chr7g0222931 Rosa chinensis HOM05D003483 ORTHO05D004101 2.6e-14 82.8 48 77.1
ECA240G0807 Erigeron canadensis HOM05D003483 ORTHO05D004101 3.4e-14 82.4 47 76.6
CARHR147060 Cardamine hirsuta HOM05D003483 ORTHO05D004101 4.4e-14 82.0 45 75.6
Lj6g0022843 Lotus japonicus HOM05D003483 ORTHO05D004101 4.4e-14 82.0 190 32.1
Aa31LG2G6290 Aethionema arabicum HOM05D003483 ORTHO05D004101 5.8e-14 81.6 45 75.6
Cpa.g.sc2.4 Carica papaya HOM05D003483 ORTHO05D004101 5.8e-14 81.6 48 75.0
Thhalv10004837m.g Eutrema salsugineum HOM05D003483 ORTHO05D004101 5.8e-14 81.6 45 75.6
SalBow6G7247 Salvia bowleyana HOM05D003483 ORTHO05D004101 5.8e-14 81.6 195 32.3
SalBow6G5560 Salvia bowleyana HOM05D003483 ORTHO05D004101 9.8e-14 80.9 195 31.8
SMO347G0483 Selaginella moellendorffii HOM05D003483 ORTHO05D004101 9.8e-14 80.9 46 73.9
AT3G26070 Arabidopsis thaliana HOM05D003483 ORTHO05D004101 1.7e-13 80.1 182 30.8
EL10Ac9g22715 Beta vulgaris HOM05D003483 ORTHO05D004101 2.2e-13 79.7 223 28.7
AL5G14750 Arabidopsis lyrata HOM05D003483 ORTHO05D004101 2.9e-13 79.3 182 30.8
Pp3c23_15450 Physcomitrium patens HOM05D003483 ORTHO05D004101 2.9e-13 79.3 187 32.6
BcaC06g31094 Brassica carinata HOM05D003483 ORTHO05D004101 4.9e-13 78.6 45 71.1
A06p42270 Brassica napus HOM05D003483 ORTHO05D004101 4.9e-13 78.6 45 71.1
Sp2g15270 Schrenkiella parvula HOM05D003483 ORTHO05D004101 4.9e-13 78.6 45 71.1
BcaC06g31097 Brassica carinata HOM05D000468 ORTHO05D004101 6.4e-13 78.2 45 71.1
BcaC06g33930 Brassica carinata HOM05D003483 ORTHO05D004101 6.4e-13 78.2 45 71.1
C07p35050 Brassica napus HOM05D003483 ORTHO05D004101 6.4e-13 78.2 45 71.1
Carub.0005s0393 Capsella rubella HOM05D003483 ORTHO05D004101 6.4e-13 78.2 182 29.7
ECA240G4797 Erigeron canadensis HOM05D003483 ORTHO05D008021 8.3e-13 77.8 47 72.3
THA.LOC104824018 Tarenaya hassleriana HOM05D003483 ORTHO05D004101 8.3e-13 77.8 45 73.3
AagrBONN_evm.TU.Sc2ySwM_344.1832 Anthoceros agrestis HOM05D003483 ORTHO05D004101 1.1e-12 77.4 45 71.1
MSTRG.5236 Avicennia marina HOM05D003483 ORTHO05D004101 2.4e-12 76.3 222 31.5
Sc06g0009790 Simmondsia chinensis HOM05D003483 ORTHO05D004101 3.2e-12 75.9 187 30.5
THA.LOC104825685 Tarenaya hassleriana HOM05D003483 ORTHO05D004101 9.2e-12 74.3 182 28.6
AUR62015054 Chenopodium quinoa HOM05D003483 ORTHO05D004101 2.7e-11 72.8 232 29.7
CSS0000529 Camellia sinensis var. sinensis HOM05D003483 ORTHO05D004101 3.5e-11 72.4 46 71.7
AL5G14760 Arabidopsis lyrata HOM05D003483 ORTHO05D004101 7.8e-11 71.2 45 68.9
Lalb_Chr15g0090651 Lupinus albus HOM05D003483 ORTHO05D004101 6.6e-10 68.2 196 28.1
CBR_g3139 Chara braunii HOM05D003483 ORTHO05D004101 8.6e-10 67.8 177 29.9
CANSAT11G2084 Cannabis sativa HOM05D003483 ORTHO05D004101 1.5e-09 67.0 121 39.7
Carub.0005s0394 Capsella rubella HOM05D003483 ORTHO05D004101 4.3e-09 65.5 46 65.2
Lsat_1_v5_gn_9_118261 Lactuca sativa HOM05D003483 ORTHO05D004101 7.3e-09 64.7 236 25.8
Lj6g0024243 Lotus japonicus HOM05D003483 ORTHO05D004101 2.8e-08 62.8 144 34.0
Duzib248G1166 Durio zibethinus HOM05D003483 ORTHO05D004101 6.2e-08 61.6 53 62.3
Prupe.1G566700 Prunus persica HOM05D003483 ORTHO05D004101 1.4e-07 60.5 106 37.7
MCO03G426 Micromonas commoda HOM05D003483 ORTHO05D004101 2.3e-07 59.7 44 56.8
Cre03.g188650 Chlamydomonas reinhardtii HOM05D003483 ORTHO05D004101 3.1e-07 59.3 40 65.0
Oeu000192.1 Olea europaea HOM05D003483 ORTHO05D004101 3.1e-07 59.3 58 51.7
Solyc01g104320.4 Solanum lycopersicum HOM05D003483 ORTHO05D004101 3.1e-07 59.3 122 37.7
Ciclev10003624m.g Citrus clementina HOM05D003483 ORTHO05D004101 4.0e-07 58.9 56 58.9
COL.COLO4_17880 Corchorus olitorius HOM05D003483 ORTHO05D004101 4.0e-07 58.9 68 48.5
PRCOL_00005437 Prasinoderma coloniale HOM05D003483 ORTHO05D004101 4.0e-07 58.9 45 57.8
Sopen01g046770 Solanum pennellii HOM05D003483 ORTHO05D004101 4.0e-07 58.9 57 56.1
MSTRG.5233 Avicennia marina HOM05D003483 ORTHO05D004101 6.8e-07 58.2 123 39.0
CSS0036812 Camellia sinensis var. sinensis HOM05D003483 ORTHO05D004101 6.8e-07 58.2 66 43.9
CSS0038053 Camellia sinensis var. sinensis HOM05D003483 ORTHO05D004101 6.8e-07 58.2 66 43.9
Dinv24264 Davidia involucrata HOM05D003483 ORTHO05D004101 6.8e-07 58.2 51 64.7
Psat1g224320 Pisum sativum HOM05D003483 ORTHO05D004101 1.5e-06 57.0 113 37.2
Oeu000193.1 Olea europaea HOM05D003483 ORTHO05D004101 2.6e-06 56.2 59 55.9
Cpa.g.sc2.3 Carica papaya HOM05D003483 ORTHO05D004101 3.4e-06 55.8 67 52.2
AUR62015051 Chenopodium quinoa HOM05D003483 ORTHO05D004101 3.4e-06 55.8 157 29.9
CiPaw.06G148300 Carya illinoinensis HOM05D003483 ORTHO05D004101 5.8e-06 55.1 104 35.6
Haze_01640 Corylus avellana HOM05D003483 ORTHO05D004101 9.9e-06 54.3 110 36.4


User provided reference genes

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