Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_027661 Vanilla planifolia HOM05D002007 ORTHO05D005759 5.5e-102 374.4 203 100.0
HPP92_007452 Vanilla planifolia HOM05D002007 ORTHO05D005759 6.8e-76 287.7 168 89.9
HPP92_022732 Vanilla planifolia HOM05D002007 ORTHO05D005759 2.8e-45 186.0 194 53.1
HPP92_022745 Vanilla planifolia HOM05D002007 ORTHO05D005759 4.0e-44 182.2 184 53.3
Aqoxy3G01987 Aquilegia oxysepala HOM05D002007 ORTHO05D005759 1.1e-38 164.1 192 41.1
PSO782G5315 Papaver somniferum HOM05D002007 ORTHO05D005759 3.3e-38 162.5 198 41.9
Nn3g19126 Nelumbo nucifera HOM05D002007 ORTHO05D005759 9.6e-38 161.0 204 42.6
Nn1g09291 Nelumbo nucifera HOM05D002007 ORTHO05D005759 2.1e-37 159.8 190 42.6
TAR629G0178 Trochodendron aralioides HOM05D002007 ORTHO05D005759 1.8e-36 156.8 199 40.7
CiPaw.05G148700 Carya illinoinensis HOM05D002007 ORTHO05D005759 6.9e-36 154.8 191 40.3
Phvul.002G122900 Phaseolus vulgaris HOM05D002007 ORTHO05D005759 4.9e-34 148.7 193 43.0
Thecc.03G321300 Theobroma cacao HOM05D002007 ORTHO05D005759 8.4e-34 147.9 195 39.0
VMungo0251G0075 Vigna mungo HOM05D002007 ORTHO05D005759 8.4e-34 147.9 200 39.5
VMungo1215G3059 Vigna mungo HOM05D002007 ORTHO05D005759 1.4e-33 147.1 193 42.0
Haze_08040 Corylus avellana HOM05D002007 ORTHO05D005759 2.5e-33 146.4 190 41.6
Haze_08050 Corylus avellana HOM05D002007 ORTHO05D005759 2.5e-33 146.4 190 41.6
Glyma.09G217800 Glycine max HOM05D002007 ORTHO05D005759 2.5e-33 146.4 193 42.0
Os08g0163600 Oryza sativa ssp. japonica HOM05D009720 ORTHO05D005759 2.5e-33 146.4 193 48.2
CANSAT35G0197 Cannabis sativa HOM05D002007 ORTHO05D005759 3.2e-33 146.0 200 39.5
Glyma.01G152600 Glycine max HOM05D002007 ORTHO05D005759 7.1e-33 144.8 193 42.0
Glyma.16G108200 Glycine max HOM05D002007 ORTHO05D005759 9.3e-33 144.4 200 39.0
Sed0024576 Sechium edule HOM05D002007 ORTHO05D005759 9.3e-33 144.4 201 40.3
TWI32G1199 Tripterygium wilfordii HOM05D002007 ORTHO05D005759 9.3e-33 144.4 201 40.3
Phvul.003G277900 Phaseolus vulgaris HOM05D002007 ORTHO05D005759 1.2e-32 144.1 200 38.0
PGR042G3326 Punica granatum HOM05D002007 ORTHO05D005759 1.2e-32 144.1 191 40.3
arahy.Tifrunner.gnm1.ann1.D5KL38 Arachis hypogaea HOM05D002007 ORTHO05D000355 2.1e-32 143.3 196 39.8
arahy.Tifrunner.gnm1.ann1.WWV1B2 Arachis hypogaea HOM05D002007 ORTHO05D005759 2.1e-32 143.3 196 39.8
RhsimUnG0122600 Rhododendron simsii HOM05D002007 ORTHO05D005759 2.1e-32 143.3 196 39.8
Cpa.g.sc579.3 Carica papaya HOM05D002007 ORTHO05D005759 3.5e-32 142.5 178 41.6
FvH4_5g24680 Fragaria vesca HOM05D002007 ORTHO05D005759 4.6e-32 142.1 189 38.6
Ciclev10003495m.g Citrus clementina HOM05D002007 ORTHO05D005759 7.9e-32 141.4 199 39.2
Rhsim11G0038300 Rhododendron simsii HOM05D002007 ORTHO05D005759 7.9e-32 141.4 196 39.3
Solyc08g075230.1 Solanum lycopersicum HOM05D002007 ORTHO05D005759 1.3e-31 140.6 200 38.0
Lj2g0009290 Lotus japonicus HOM05D002007 ORTHO05D005759 2.3e-31 139.8 190 40.5
Oeu011637.1 Olea europaea HOM05D002007 ORTHO05D005759 2.3e-31 139.8 200 38.5
CAN.G514.11 Capsicum annuum HOM05D002007 ORTHO05D005759 3.0e-31 139.4 198 37.9
Nitab4.5_0000236g0050 Nicotiana tabacum HOM05D002007 ORTHO05D005759 3.0e-31 139.4 198 38.9
PGSC0003DMG400001950 Solanum tuberosum HOM05D002007 ORTHO05D005759 3.0e-31 139.4 200 37.5
Psat0s1099g0040 Pisum sativum HOM05D002007 ORTHO05D005759 6.7e-31 138.3 198 36.4
TPR.G7868 Trifolium pratense HOM05D002007 ORTHO05D005759 6.7e-31 138.3 198 37.9
Sopen08g023830 Solanum pennellii HOM05D002007 ORTHO05D005759 8.7e-31 137.9 200 37.5
Nitab4.5_0005896g0010 Nicotiana tabacum HOM05D002007 ORTHO05D005759 1.1e-30 137.5 198 37.9
vmacro00104 Vaccinium macrocarpon HOM05D002007 ORTHO05D005759 1.1e-30 137.5 196 39.3
Actinidia32796 Actinidia chinensis HOM05D002007 ORTHO05D005759 1.5e-30 137.1 185 41.1
FAN08G1950 Fragaria x ananassa HOM05D002007 ORTHO05D005759 1.5e-30 137.1 201 36.3
Manes.07G043400 Manihot esculenta HOM05D002007 ORTHO05D005759 1.5e-30 137.1 195 37.9
Medtr5g025760 Medicago truncatula HOM05D002007 ORTHO05D005759 1.5e-30 137.1 198 36.9
Migut.A00477 Erythranthe guttata HOM05D002007 ORTHO05D005759 1.9e-30 136.7 190 39.5
TPR.G11463 Trifolium pratense HOM05D002007 ORTHO05D005759 1.9e-30 136.7 198 37.4
CiPaw.06G072700 Carya illinoinensis HOM05D002007 ORTHO05D005759 2.5e-30 136.3 190 41.1
RcHm_v2.0_Chr7g0215061 Rosa chinensis HOM05D002007 ORTHO05D005759 2.5e-30 136.3 201 36.3
Medtr8g072140 Medicago truncatula HOM05D002007 ORTHO05D005759 4.3e-30 135.6 198 37.4
Oeu014069.1 Olea europaea HOM05D002007 ORTHO05D005759 4.3e-30 135.6 193 36.3
FAN04G2167 Fragaria x ananassa HOM05D002007 ORTHO05D005759 5.7e-30 135.2 201 36.3
Manes.10G095600 Manihot esculenta HOM05D002007 ORTHO05D005759 5.7e-30 135.2 201 35.8
Lj4g0014196 Lotus japonicus HOM05D002007 ORTHO05D000355 7.4e-30 134.8 190 38.4
Lalb_Chr05g0229301 Lupinus albus HOM05D002007 ORTHO05D005759 9.6e-30 134.4 194 36.6
Atru.chr6.2147 Acer truncatum HOM05D002007 ORTHO05D005759 1.3e-29 134.0 194 36.6
Dinv09412 Davidia involucrata HOM05D002007 ORTHO05D005759 1.3e-29 134.0 188 39.9
Os06g0710500 Oryza sativa ssp. japonica HOM05D002007 ORTHO05D005759 1.3e-29 134.0 175 42.3
ATR0568G058 Amborella trichopoda HOM05D002007 ORTHO05D005759 1.6e-29 133.7 193 39.4
Peaxi162Scf01644g00002 Petunia axillaris HOM05D002007 ORTHO05D005759 1.6e-29 133.7 198 36.4
Lalb_Chr05g0215211 Lupinus albus HOM05D002007 ORTHO05D005759 2.1e-29 133.3 199 37.2
Sed0024497 Sechium edule HOM05D002007 ORTHO05D005759 2.1e-29 133.3 201 37.3
Duzib205G1662 Durio zibethinus HOM05D002007 ORTHO05D005759 2.8e-29 132.9 190 36.8
Psat4g108400 Pisum sativum HOM05D002007 ORTHO05D005759 2.8e-29 132.9 198 36.4
Oeu057154.1 Olea europaea HOM05D002007 ORTHO05D005759 4.8e-29 132.1 195 35.9
Prupe.5G014700 Prunus persica HOM05D002007 ORTHO05D005759 4.8e-29 132.1 189 36.5
ClCG07G011150 Citrullus lanatus HOM05D002007 ORTHO05D005759 6.3e-29 131.7 201 36.3
Cc08_g06070 Coffea canephora HOM05D002007 ORTHO05D005759 8.2e-29 131.3 192 39.6
Gohir.A05G288800 Gossypium hirsutum HOM05D002007 ORTHO05D005759 8.2e-29 131.3 198 36.9
QL12p003360 Quercus lobata HOM05D002007 ORTHO05D005759 1.1e-28 131.0 159 42.8
MBI04_g30804_MAGBIO Magnolia biondii HOM05D002007 ORTHO05D005759 1.4e-28 130.6 192 37.5
Zm00001eb227630 Zea mays HOM05D002007 ORTHO05D005759 1.4e-28 130.6 199 38.7
Gorai.009G305100 Gossypium raimondii HOM05D002007 ORTHO05D005759 1.8e-28 130.2 198 36.4
MD06G1012000 Malus domestica HOM05D002007 ORTHO05D005759 3.1e-28 129.4 189 36.5
arahy.Tifrunner.gnm1.ann1.R12JL5 Arachis hypogaea HOM05D002007 ORTHO05D005759 5.3e-28 128.6 199 34.7
arahy.Tifrunner.gnm1.ann1.TCKY6I Arachis hypogaea HOM05D002007 ORTHO05D005759 5.3e-28 128.6 199 34.7
Zm00001eb415280 Zea mays HOM05D009720 ORTHO05D012012 6.9e-28 128.3 194 45.9
Gohir.A08G148400 Gossypium hirsutum HOM05D002007 ORTHO05D005759 2.6e-27 126.3 198 35.4
QL12p003363 Quercus lobata HOM05D002007 ORTHO05D005759 2.6e-27 126.3 163 40.5
Migut.E01381 Erythranthe guttata HOM05D002007 ORTHO05D005759 3.4e-27 125.9 191 36.6
Gorai.004G176700 Gossypium raimondii HOM05D002007 ORTHO05D005759 4.5e-27 125.6 198 35.9
PGSC0003DMG400029286 Solanum tuberosum HOM05D002007 ORTHO05D005759 4.5e-27 125.6 200 33.0
COL.COLO4_16737 Corchorus olitorius HOM05D002007 ORTHO05D005759 5.9e-27 125.2 190 36.8
Sc07g0008110 Simmondsia chinensis HOM05D002007 ORTHO05D005759 5.9e-27 125.2 196 35.2
HanXRQChr13g0412731 Helianthus annuus HOM05D002007 ORTHO05D005759 7.6e-27 124.8 193 37.8
THA.LOC104811158 Tarenaya hassleriana HOM05D002007 ORTHO05D005759 1.0e-26 124.4 190 38.4
DCAR_030946 Daucus carota HOM05D002007 ORTHO05D005759 1.3e-26 124.0 193 36.3
Sabra03G0020400 Salix brachista HOM05D002007 ORTHO05D005759 1.3e-26 124.0 199 35.7
unitig_0.g2832 Utricularia gibba HOM05D002007 ORTHO05D005759 1.3e-26 124.0 192 35.4
Lalb_Chr09g0325081 Lupinus albus HOM05D002007 ORTHO05D005759 1.7e-26 123.6 199 34.2
CAN.G947.27 Capsicum annuum HOM05D002007 ORTHO05D005759 2.9e-26 122.9 200 34.0
Ca_22461_v3 Cicer arietinum L. HOM05D002007 ORTHO05D005759 3.8e-26 122.5 165 40.6
AT5G45320 Arabidopsis thaliana HOM05D002007 ORTHO05D005759 5.0e-26 122.1 187 38.0
Sp2g10270 Schrenkiella parvula HOM05D002007 ORTHO05D005759 5.0e-26 122.1 187 36.4
Solyc12g096180.1 Solanum lycopersicum HOM05D002007 ORTHO05D005759 5.0e-26 122.1 198 32.3
Aa31LG9G7700 Aethionema arabicum HOM05D002007 ORTHO05D005759 6.5e-26 121.7 190 35.3
CsaV3_4G014820 Cucumis sativus L. HOM05D002007 ORTHO05D000355 6.5e-26 121.7 189 35.4
BcaC06g31560 Brassica carinata HOM05D002007 ORTHO05D005759 1.1e-25 120.9 193 34.7
Zm00001eb153250 Zea mays HOM05D009720 ORTHO05D012012 1.9e-25 120.2 194 39.2
FAN13G3232 Fragaria x ananassa HOM05D002007 ORTHO05D005759 2.5e-25 119.8 159 39.0
Potri.003G046000 Populus trichocarpa HOM05D002007 ORTHO05D005759 2.5e-25 119.8 164 39.6
Actinidia01243 Actinidia chinensis HOM05D002007 ORTHO05D005759 3.2e-25 119.4 165 40.0
AL8G13480 Arabidopsis lyrata HOM05D002007 ORTHO05D005759 3.2e-25 119.4 194 35.6
Thhalv10001032m.g Eutrema salsugineum HOM05D002007 ORTHO05D005759 3.2e-25 119.4 187 34.8
FAN13G3190 Fragaria x ananassa HOM05D002007 ORTHO05D005759 3.2e-25 119.4 159 39.0
FAN18G3178 Fragaria x ananassa HOM05D002007 ORTHO05D005759 3.2e-25 119.4 159 39.0
Lsat_1_v5_gn_6_16960 Lactuca sativa HOM05D002007 ORTHO05D005759 3.2e-25 119.4 187 39.6
DCAR_000713 Daucus carota HOM05D002007 ORTHO05D005759 4.2e-25 119.0 190 36.3
HanXRQChr08g0227001 Helianthus annuus HOM05D002007 ORTHO05D005759 4.2e-25 119.0 198 37.9
Nitab4.5_0010692g0010 Nicotiana tabacum HOM05D002007 ORTHO05D005759 4.2e-25 119.0 200 33.0
EL10Ac5g11944 Beta vulgaris HOM05D002007 ORTHO05D005759 5.5e-25 118.6 163 39.3
BcaC06g34446 Brassica carinata HOM05D002007 ORTHO05D005759 5.5e-25 118.6 193 35.8
Lsat_1_v5_gn_6_74040 Lactuca sativa HOM05D002007 ORTHO05D005759 5.5e-25 118.6 198 34.3
ECA233G2534 Erigeron canadensis HOM05D002007 ORTHO05D005759 9.3e-25 117.9 199 37.2
Gohir.D08G169500 Gossypium hirsutum HOM05D002007 ORTHO05D005759 9.3e-25 117.9 198 34.3
SHI32759 Sapria himalayana HOM05D002007 ORTHO05D005759 1.2e-24 117.5 181 34.8
Nitab4.5_0000943g0020 Nicotiana tabacum HOM05D002007 ORTHO05D005759 2.1e-24 116.7 200 33.0
Zm00001eb373170 Zea mays HOM05D009720 ORTHO05D012012 2.7e-24 116.3 176 42.0
BcaC03g16740 Brassica carinata HOM05D002007 ORTHO05D005759 4.6e-24 115.5 173 37.6
A02p29030 Brassica napus HOM05D002007 ORTHO05D005759 4.6e-24 115.5 173 37.6
C02p46130 Brassica napus HOM05D002007 ORTHO05D005759 4.6e-24 115.5 173 37.6
BolC2t10670H Brassica oleracea HOM05D002007 ORTHO05D005759 4.6e-24 115.5 173 37.6
BraA02t07935Z Brassica rapa HOM05D002007 ORTHO05D005759 4.6e-24 115.5 173 37.6
CARHR176770 Cardamine hirsuta HOM05D002007 ORTHO05D005759 6.1e-24 115.2 173 37.0
Zm00001eb198890 Zea mays HOM05D009720 ORTHO05D012012 7.9e-24 114.8 176 40.9
Sabra03G0020600 Salix brachista HOM05D002007 ORTHO05D005759 1.0e-23 114.4 191 36.1
Sabra01G0179300 Salix brachista HOM05D002007 ORTHO05D005759 1.3e-23 114.0 201 32.3
ClCG11G016180 Citrullus lanatus HOM05D002007 ORTHO05D005759 1.8e-23 113.6 188 34.6
CDE02G4391 Ceratophyllum demersum HOM05D002007 ORTHO05D005759 2.3e-23 113.2 158 38.0
Carub.0008s0281 Capsella rubella HOM05D002007 ORTHO05D005759 3.0e-23 112.8 187 35.8
Eucgr.E01156 Eucalyptus grandis HOM05D002007 ORTHO05D005759 3.0e-23 112.8 174 35.1
Zm00001eb278080 Zea mays HOM05D009720 ORTHO05D012012 3.0e-23 112.8 194 41.2
C07p28350 Brassica napus HOM05D002007 ORTHO05D005759 3.9e-23 112.5 178 36.5
BolC7t43375H Brassica oleracea HOM05D002007 ORTHO05D005759 3.9e-23 112.5 178 36.5
Zm00001eb371360 Zea mays HOM05D009720 ORTHO05D012012 5.1e-23 112.1 157 43.9
A06p46680 Brassica napus HOM05D002007 ORTHO05D005759 6.7e-23 111.7 178 36.0
BraA06t27540Z Brassica rapa HOM05D002007 ORTHO05D005759 6.7e-23 111.7 178 36.0
CsaV3_4G007100 Cucumis sativus L. HOM05D002007 ORTHO05D005759 6.7e-23 111.7 173 34.7
Zm00001eb319490 Zea mays HOM05D009720 ORTHO05D012012 6.7e-23 111.7 176 39.8
BcaB07g30461 Brassica carinata HOM05D002007 ORTHO05D005759 8.7e-23 111.3 173 36.4
Sopen12g032050 Solanum pennellii HOM05D007367 ORTHO05D008866 8.7e-23 111.3 180 32.2
Zm00001eb343480 Zea mays HOM05D009720 ORTHO05D012012 1.5e-22 110.5 175 38.3
Oeu023064.1 Olea europaea HOM05D002007 ORTHO05D005759 1.9e-22 110.2 195 33.3
Sed0013162 Sechium edule HOM05D002007 ORTHO05D005759 1.9e-22 110.2 189 32.3
Zm00001eb351470 Zea mays HOM05D009720 ORTHO05D012012 9.7e-22 107.8 176 39.2
Peaxi162Scf00876g00032 Petunia axillaris HOM05D002007 ORTHO05D005759 2.8e-21 106.3 185 33.5
AL8G13540 Arabidopsis lyrata HOM05D002007 ORTHO05D005759 4.8e-21 105.5 179 34.6
ECA240G4318 Erigeron canadensis HOM05D002007 ORTHO05D000355 6.3e-21 105.1 163 37.4
HanXRQChr03g0082821 Helianthus annuus HOM05D002007 ORTHO05D005759 1.1e-20 104.4 193 32.6
Gohir.D12G203700 Gossypium hirsutum HOM05D002007 ORTHO05D005759 3.4e-19 99.4 194 31.4
Gorai.008G218500 Gossypium raimondii HOM05D002007 ORTHO05D005759 3.4e-19 99.4 194 31.4
Zm00001eb149200 Zea mays HOM05D009720 ORTHO05D012012 5.9e-19 98.6 193 33.2
Zm00001eb081960 Zea mays HOM05D009720 ORTHO05D012012 7.7e-19 98.2 152 42.1
SalBow4G0822 Salvia bowleyana HOM05D002007 ORTHO05D000355 1.1e-17 94.4 192 29.7
Zm00001eb081970 Zea mays HOM05D009720 ORTHO05D012012 1.9e-17 93.6 152 40.8
MSTRG.25753 Avicennia marina HOM05D002007 ORTHO05D005759 6.1e-16 88.6 122 40.2
Zm00001eb081950 Zea mays HOM05D009720 ORTHO05D012012 1.4e-15 87.4 128 39.1
Zm00001eb024860 Zea mays HOM05D009720 ORTHO05D012012 5.1e-15 85.5 178 38.8
Zm00001eb055160 Zea mays HOM05D009720 ORTHO05D012012 5.7e-14 82.0 128 41.4
Zm00001eb076370 Zea mays HOM05D003600 ORTHO05D004129 7.4e-14 81.6 143 37.8
HPP92_027668 Vanilla planifolia HOM05D002007 ORTHO05D428762 2.8e-13 79.7 51 80.4
Zm00001eb260860 Zea mays HOM05D009720 ORTHO05D012012 3.7e-13 79.3 122 37.7
Gohir.D05G290066 Gossypium hirsutum HOM05D002007 ORTHO05D005759 3.4e-11 72.8 109 34.9
MD16G1286800 Malus domestica HOM05D002007 ORTHO05D005759 1.1e-09 67.8 125 30.4
Zm00001eb146260 Zea mays HOM05D009720 ORTHO05D012012 1.1e-09 67.8 92 42.4
Zm00001eb182910 Zea mays HOM05D009720 ORTHO05D012012 1.9e-09 67.0 70 45.7
Zm00001eb247870 Zea mays HOM05D009720 ORTHO05D012012 4.2e-09 65.9 70 45.7
Lalb_Chr15g0076561 Lupinus albus HOM05D000733 ORTHO05D000644 7.9e-08 61.6 169 25.4
Dinv37439 Davidia involucrata HOM05D006619 ORTHO05D008351 1.4e-07 60.8 79 39.2
Glyma.16G017900 Glycine max HOM05D000733 ORTHO05D000644 1.4e-07 60.8 170 26.5
Glyma.19G260500 Glycine max HOM05D000733 ORTHO05D000644 3.9e-07 59.3 170 24.1
Glyma.03G261400 Glycine max HOM05D000733 ORTHO05D000644 5.1e-07 58.9 170 24.7
vmacro11620 Vaccinium macrocarpon HOM05D002540 ORTHO05D002672 5.1e-07 58.9 202 24.3
Zm00001eb313120 Zea mays HOM05D009720 ORTHO05D012012 5.1e-07 58.9 58 48.3
Zm00001eb396980 Zea mays HOM05D009720 ORTHO05D012012 5.1e-07 58.9 54 53.7
HanXRQChr05g0160241 Helianthus annuus HOM05D002540 ORTHO05D002672 6.7e-07 58.5 199 22.1
MBI12_g14505_MAGBIO Magnolia biondii HOM05D000733 ORTHO05D000644 8.8e-07 58.2 169 23.1
Zm00001eb351480 Zea mays HOM05D009720 ORTHO05D012012 1.1e-06 57.8 80 41.2
Lsat_1_v5_gn_5_301 Lactuca sativa HOM05D002540 ORTHO05D002672 3.3e-06 56.2 201 21.4
Psat4g164120 Pisum sativum HOM05D000733 ORTHO05D000644 5.7e-06 55.5 170 22.4
MELO3C016214.2 Cucumis melo HOM05D002007 ORTHO05D005759 7.4e-06 55.1 74 37.8
Phvul.009G258400 Phaseolus vulgaris HOM05D000733 ORTHO05D000644 7.4e-06 55.1 168 22.6
Ah.12g058290 Amaranthus hybridus HOM05D002540 ORTHO05D002672 9.7e-06 54.7 179 24.6


User provided reference genes

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