Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_027652 Vanilla planifolia HOM05D003551 ORTHO05D016818 3.0e-78 295.0 145 100.0
HPP92_027649 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.8e-28 128.6 84 81.0
HPP92_006854 Vanilla planifolia HOM05D003551 ORTHO05D016818 4.9e-20 101.7 65 83.1
HPP92_006872 Vanilla planifolia HOM05D003551 ORTHO05D016818 8.4e-20 100.9 51 98.0
HPP92_011125 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.5e-18 95.5 51 94.1
HPP92_028370 Vanilla planifolia HOM05D003551 ORTHO05D016818 7.9e-18 94.4 51 94.1
HPP92_006540 Vanilla planifolia HOM05D003551 ORTHO05D016818 4.8e-15 85.1 51 84.3
HPP92_028489 Vanilla planifolia HOM05D003551 ORTHO05D016818 4.1e-14 82.0 51 82.4
HPP92_028374 Vanilla planifolia HOM05D003551 ORTHO05D016818 4.5e-13 78.6 44 90.9
TAR374G0468 Trochodendron aralioides HOM05D003551 ORTHO05D004869 4.2e-11 72.0 57 63.2
PSO017G3678 Papaver somniferum HOM05D003551 ORTHO05D004869 5.5e-11 71.6 54 68.5
PSO478G3924 Papaver somniferum HOM05D003551 ORTHO05D004869 5.5e-11 71.6 54 68.5
PSO017G4772 Papaver somniferum HOM05D003551 ORTHO05D004869 9.4e-11 70.9 54 68.5
PSO063G2135 Papaver somniferum HOM05D003551 ORTHO05D004869 9.4e-11 70.9 54 68.5
Aqoxy3G01365 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 2.7e-10 69.3 61 57.4
Aqoxy3G00657 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 4.6e-10 68.6 61 57.4
HPP92_027089 Vanilla planifolia HOM05D003551 ORTHO05D016818 1.0e-09 67.4 44 81.8
GSVIVG01000585001 Vitis vinifera HOM05D003551 ORTHO05D004869 3.9e-09 65.5 55 61.8
Solyc12g099890.2 Solanum lycopersicum HOM05D003551 ORTHO05D004869 6.7e-09 64.7 57 59.6
Sopen12g034510 Solanum pennellii HOM05D003551 ORTHO05D004869 6.7e-09 64.7 57 59.6
PGSC0003DMG400004723 Solanum tuberosum HOM05D003551 ORTHO05D004869 6.7e-09 64.7 57 59.6
Phvul.001G256500 Phaseolus vulgaris HOM05D003551 ORTHO05D004869 8.8e-09 64.3 57 61.4
TWI34G1512 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 1.5e-08 63.5 57 57.9
CSS0025446 Camellia sinensis var. sinensis HOM05D003551 ORTHO05D004869 2.0e-08 63.2 57 57.9
CiPaw.06G064600 Carya illinoinensis HOM05D003551 ORTHO05D004869 2.0e-08 63.2 57 57.9
Migut.K00634 Erythranthe guttata HOM05D003551 ORTHO05D004869 2.0e-08 63.2 57 61.4
FvH4_4g25230 Fragaria vesca HOM05D003551 ORTHO05D004869 2.0e-08 63.2 58 58.6
FAN07G2018 Fragaria x ananassa HOM05D003551 ORTHO05D004869 2.0e-08 63.2 58 58.6
FAN12G2593 Fragaria x ananassa HOM05D003551 ORTHO05D004869 2.0e-08 63.2 58 58.6
FAN17G0358 Fragaria x ananassa HOM05D003551 ORTHO05D004869 2.0e-08 63.2 58 58.6
FAN22G1040 Fragaria x ananassa HOM05D003551 ORTHO05D004869 2.0e-08 63.2 58 58.6
Lj1g0001310 Lotus japonicus HOM05D003551 ORTHO05D004869 2.0e-08 63.2 57 56.1
Cpa.g.sc33.80 Carica papaya HOM05D003551 ORTHO05D004869 2.5e-08 62.8 57 59.6
DCAR_007035 Daucus carota HOM05D003551 ORTHO05D004869 2.5e-08 62.8 57 57.9
Glyma.11G244500 Glycine max HOM05D003551 ORTHO05D004869 2.5e-08 62.8 57 57.9
Nitab4.5_0001290g0150 Nicotiana tabacum HOM05D003551 ORTHO05D004869 3.3e-08 62.4 57 56.1
Nitab4.5_0004725g0020 Nicotiana tabacum HOM05D003551 ORTHO05D004869 3.3e-08 62.4 57 56.1
Peaxi162Scf00062g00716 Petunia axillaris HOM05D003551 ORTHO05D004869 4.3e-08 62.0 57 56.1
RcHm_v2.0_Chr4g0432421 Rosa chinensis HOM05D003551 ORTHO05D004869 4.3e-08 62.0 58 56.9
VMungo0540G0742 Vigna mungo HOM05D003551 ORTHO05D004869 4.3e-08 62.0 57 57.9
ECA240G1955 Erigeron canadensis HOM05D003551 ORTHO05D004869 5.7e-08 61.6 59 55.9
HanXRQChr08g0208471 Helianthus annuus HOM05D003551 ORTHO05D004869 5.7e-08 61.6 59 54.2
Prupe.1G240500 Prunus persica HOM05D003551 ORTHO05D004869 5.7e-08 61.6 57 59.6
Hund25033 Selenicereus undatus HOM05D003551 ORTHO05D004869 5.7e-08 61.6 57 59.6
Lsat_1_v5_gn_8_153700 Lactuca sativa HOM05D003551 ORTHO05D004869 7.4e-08 61.2 59 55.9
AL1G24840 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 9.7e-08 60.8 57 59.6
Cc11_g16150 Coffea canephora HOM05D003551 ORTHO05D004869 9.7e-08 60.8 57 56.1
Manes.12G019500 Manihot esculenta HOM05D003551 ORTHO05D004869 9.7e-08 60.8 59 52.5
EL10Ac6g14297 Beta vulgaris HOM05D003551 ORTHO05D004869 1.3e-07 60.5 52 59.6
A09p63240 Brassica napus HOM05D003551 ORTHO05D004869 1.3e-07 60.5 70 51.4
C08p46730 Brassica napus HOM05D003551 ORTHO05D004869 1.3e-07 60.5 70 51.4
BolC8t52212H Brassica oleracea HOM05D003551 ORTHO05D004869 1.3e-07 60.5 70 51.4
BraA09t41676Z Brassica rapa HOM05D003551 ORTHO05D004869 1.3e-07 60.5 70 51.4
Dinv14754 Davidia involucrata HOM05D003551 ORTHO05D004869 1.3e-07 60.5 57 56.1
Hma1.2p1_0079F.1_g041260 Hydrangea macrophylla HOM05D003551 ORTHO05D004869 1.3e-07 60.5 57 56.1
Medtr3g086350 Medicago truncatula HOM05D003551 ORTHO05D004869 1.3e-07 60.5 57 57.9
Rhsim12G0038300 Rhododendron simsii HOM05D003551 ORTHO05D004869 1.3e-07 60.5 57 57.9
SalBow2G2049 Salvia bowleyana HOM05D003551 ORTHO05D004869 1.3e-07 60.5 57 57.9
CARHR068650 Cardamine hirsuta HOM05D003551 ORTHO05D004869 1.7e-07 60.1 55 60.0
Ciclev10030726m.g Citrus clementina HOM05D003551 ORTHO05D004869 1.7e-07 60.1 57 56.1
Haze_12293 Corylus avellana HOM05D003551 ORTHO05D004869 1.7e-07 60.1 57 56.1
Thhalv10006828m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 2.2e-07 59.7 57 57.9
Lj6C816T3 Lonicera japonica HOM05D003551 ORTHO05D004869 2.2e-07 59.7 57 56.1
Oeu014152.4 Olea europaea HOM05D003551 ORTHO05D004869 2.2e-07 59.7 57 56.1
Aa31LG1G1640 Aethionema arabicum HOM05D003551 ORTHO05D004869 2.8e-07 59.3 57 54.4
CDE02G2789 Ceratophyllum demersum HOM05D003551 ORTHO05D004869 2.8e-07 59.3 56 53.6
CAN.G484.3 Capsicum annuum HOM05D003551 ORTHO05D004869 3.7e-07 58.9 57 56.1
MELO3C022674.2 Cucumis melo HOM05D003551 ORTHO05D004869 3.7e-07 58.9 57 56.1
CsaV3_1G012700 Cucumis sativus L. HOM05D003551 ORTHO05D004869 3.7e-07 58.9 57 56.1
QL05p021165 Quercus lobata HOM05D003551 ORTHO05D004869 3.7e-07 58.9 57 52.6
Sp1g11680 Schrenkiella parvula HOM05D003551 ORTHO05D004869 3.7e-07 58.9 73 50.7
HPP92_026938 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.7e-07 58.9 37 78.4
Atru.chr11.1974 Acer truncatum HOM05D003551 ORTHO05D004869 4.8e-07 58.5 57 56.1
Carub.0003s0103 Capsella rubella HOM05D003551 ORTHO05D004869 4.8e-07 58.5 54 59.3
COL.COLO4_23531 Corchorus olitorius HOM05D003551 ORTHO05D004869 4.8e-07 58.5 57 56.1
Duzib268G0822 Durio zibethinus HOM05D003551 ORTHO05D004869 4.8e-07 58.5 57 56.1
Thhalv10005577m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 4.8e-07 58.5 73 49.3
THA.LOC104809236 Tarenaya hassleriana HOM05D003551 ORTHO05D004869 4.8e-07 58.5 58 55.2
Thecc.02G267000 Theobroma cacao HOM05D003551 ORTHO05D004869 4.8e-07 58.5 57 56.1
TPR.G5678 Trifolium pratense HOM05D003551 ORTHO05D004869 4.8e-07 58.5 82 42.7
ClCG03G002050 Citrullus lanatus HOM05D003551 ORTHO05D004869 6.3e-07 58.2 57 56.1
Oeu028968.1 Olea europaea HOM05D003551 ORTHO05D004869 6.3e-07 58.2 57 54.4
Sabra08G0139300 Salix brachista HOM05D003551 ORTHO05D004869 6.3e-07 58.2 57 52.6
TWI36G0896 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 6.3e-07 58.2 57 54.4
MSTRG.7955 Avicennia marina HOM05D003551 ORTHO05D004869 8.2e-07 57.8 57 56.1
Cfa009260 Carpinus fangiana HOM05D003551 ORTHO05D004869 8.2e-07 57.8 57 54.4
Psat2g160640 Pisum sativum HOM05D003551 ORTHO05D004869 8.2e-07 57.8 57 54.4
Sc04g0005980 Simmondsia chinensis HOM05D003551 ORTHO05D004869 8.2e-07 57.8 57 54.4
TWI75G1217 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 8.2e-07 57.8 57 54.4
vmacro01109 Vaccinium macrocarpon HOM05D003551 ORTHO05D004869 8.2e-07 57.8 57 56.1
Carub.0001s1289 Capsella rubella HOM05D003551 ORTHO05D004869 1.1e-06 57.4 54 55.6
SHI17843 Sapria himalayana HOM05D003551 ORTHO05D000023 1.1e-06 57.4 57 52.6
CANSAT01G3182 Cannabis sativa HOM05D003551 ORTHO05D004869 1.4e-06 57.0 57 50.9
MELO3C026845.2 Cucumis melo HOM05D003551 ORTHO05D004869 1.4e-06 57.0 57 54.4
Potri.008G182900 Populus trichocarpa HOM05D003551 ORTHO05D004869 1.4e-06 57.0 57 52.6
Actinidia01370 Actinidia chinensis HOM05D003551 ORTHO05D004869 1.8e-06 56.6 89 39.3
AT1G13160 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 1.8e-06 56.6 57 56.1
Eucgr.H02450 Eucalyptus grandis HOM05D003551 ORTHO05D004869 1.8e-06 56.6 57 56.1
Gohir.A12G268000 Gossypium hirsutum HOM05D003551 ORTHO05D004869 2.4e-06 56.2 57 56.1
AUR62002805 Chenopodium quinoa HOM05D003551 ORTHO05D004869 4.1e-06 55.5 57 54.4
Gorai.008G288600 Gossypium raimondii HOM05D003551 ORTHO05D004869 4.1e-06 55.5 57 56.1
SGA_v2.0_scaffold92G28200 Striga asiatica HOM05D003551 ORTHO05D004869 4.1e-06 55.5 57 52.6
Gohir.D12G268400 Gossypium hirsutum HOM05D003551 ORTHO05D004869 5.3e-06 55.1 57 54.4
LjContig00312_ERROPOS870357g0004032 Lotus japonicus HOM05D003551 ORTHO05D004869 5.3e-06 55.1 57 50.9
Lsat_1_v5_gn_8_153780 Lactuca sativa HOM05D003551 ORTHO05D004869 6.9e-06 54.7 58 50.0
ATR0824G183 Amborella trichopoda HOM05D003551 ORTHO05D004869 9.1e-06 54.3 54 50.0


User provided reference genes

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