Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_027404 Vanilla planifolia HOM05D005714 ORTHO05D006812 1.1e-177 626.7 347 100.0
MBI15_g36941_MAGBIO Magnolia biondii HOM05D005714 ORTHO05D006812 3.1e-92 342.8 351 60.4
CSS0016024 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 6.6e-87 325.1 354 57.3
CSS0020756 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 1.5e-86 323.9 354 57.3
Lj7A8G44 Lonicera japonica HOM05D005714 ORTHO05D006812 2.5e-86 323.2 352 56.5
Dinv33913 Davidia involucrata HOM05D005714 ORTHO05D006812 4.3e-86 322.4 354 56.8
Nn3g17645 Nelumbo nucifera HOM05D005714 ORTHO05D006812 5.6e-86 322.0 360 55.6
CANSAT64G2721 Cannabis sativa HOM05D005714 ORTHO05D006812 1.2e-85 320.9 355 57.2
Cfa007977 Carpinus fangiana HOM05D001801 ORTHO05D001739 2.3e-84 316.6 355 56.9
Prupe.3G242300 Prunus persica HOM05D005714 ORTHO05D006812 2.3e-84 316.6 352 56.8
CiPaw.03G006400 Carya illinoinensis HOM05D005714 ORTHO05D006812 4.0e-84 315.8 353 56.4
FvH4_6g45610 Fragaria vesca HOM05D005714 ORTHO05D006812 4.0e-84 315.8 352 56.8
PGR042G2576 Punica granatum HOM05D005714 ORTHO05D006812 1.5e-83 313.9 352 56.0
RcHm_v2.0_Chr2g0163761 Rosa chinensis HOM05D005714 ORTHO05D006812 1.5e-83 313.9 351 56.1
Aqoxy3G03832 Aquilegia oxysepala HOM05D005714 ORTHO05D006812 3.4e-83 312.8 348 55.2
PSO063G3590 Papaver somniferum HOM05D005714 ORTHO05D006812 7.5e-83 311.6 351 53.8
Thecc.04G144400 Theobroma cacao HOM05D005714 ORTHO05D006812 2.2e-82 310.1 355 53.8
Eucgr.J01456 Eucalyptus grandis HOM05D005714 ORTHO05D006812 3.7e-82 309.3 358 52.0
Os09g0108400 Oryza sativa ssp. japonica HOM05D005714 ORTHO05D006812 4.9e-82 308.9 346 54.6
Oeu032870.1 Olea europaea HOM05D005714 ORTHO05D006812 6.4e-82 308.5 354 55.4
COL.COLO4_03920 Corchorus olitorius HOM05D005714 ORTHO05D006812 1.9e-81 307.0 348 54.0
MD17G1072600 Malus domestica HOM05D005714 ORTHO05D006812 3.2e-81 306.2 352 56.5
SGA_v2.0_scaffold204G41660 Striga asiatica HOM05D005714 ORTHO05D006812 4.1e-81 305.8 350 54.9
MD09G1081200 Malus domestica HOM05D005714 ORTHO05D006812 1.2e-80 304.3 352 56.0
Actinidia36301 Actinidia chinensis HOM05D005714 ORTHO05D006812 2.1e-80 303.5 351 54.7
Peaxi162Scf00479g00037 Petunia axillaris HOM05D005714 ORTHO05D006812 2.7e-80 303.1 351 55.6
Sed0016830 Sechium edule HOM05D005714 ORTHO05D006812 3.9e-79 299.3 352 52.8
Nitab4.5_0000612g0140 Nicotiana tabacum HOM05D005714 ORTHO05D006812 5.1e-79 298.9 350 54.9
Cc07_g04960 Coffea canephora HOM05D005714 ORTHO05D006812 1.5e-78 297.4 354 52.8
Gorai.007G187100 Gossypium raimondii HOM05D005714 ORTHO05D006812 2.5e-78 296.6 356 53.7
THA.LOC104802994 Tarenaya hassleriana HOM05D005714 ORTHO05D006812 2.5e-78 296.6 355 54.1
Migut.H00540 Erythranthe guttata HOM05D005714 ORTHO05D006812 7.3e-78 295.0 355 52.4
Rhsim10G0064900 Rhododendron simsii HOM05D005714 ORTHO05D006812 7.3e-78 295.0 362 55.0
Gohir.D11G174600 Gossypium hirsutum HOM05D005714 ORTHO05D006812 9.5e-78 294.7 353 53.8
SalBow1G2935 Salvia bowleyana HOM05D005714 ORTHO05D006812 9.5e-78 294.7 361 51.2
GSVIVG01036468001 Vitis vinifera HOM05D005714 ORTHO05D006812 1.2e-77 294.3 353 52.7
MSTRG.2945 Avicennia marina HOM05D005714 ORTHO05D006812 1.6e-77 293.9 353 52.7
CsaV3_3G020470 Cucumis sativus L. HOM05D005714 ORTHO05D006812 3.6e-77 292.7 351 51.9
EL10Ac2g04627 Beta vulgaris HOM05D005714 ORTHO05D006812 6.2e-77 292.0 351 53.0
SalBow1G3421 Salvia bowleyana HOM05D005714 ORTHO05D006812 6.2e-77 292.0 352 51.7
Potri.017G110300 Populus trichocarpa HOM05D005714 ORTHO05D006812 8.1e-77 291.6 361 53.7
PGSC0003DMG400018763 Solanum tuberosum HOM05D005714 ORTHO05D006812 1.4e-76 290.8 351 51.3
CDE02G2817 Ceratophyllum demersum HOM05D005714 ORTHO05D006812 1.8e-76 290.4 378 51.1
MELO3C023776.2 Cucumis melo HOM05D005714 ORTHO05D006812 1.8e-76 290.4 361 52.1
Sabra17G0092200 Salix brachista HOM05D005714 ORTHO05D006812 1.8e-76 290.4 355 53.5
Cpa.g.sc179.47 Carica papaya HOM05D005714 ORTHO05D006812 4.0e-76 289.3 358 53.6
Carub.0006s1407 Capsella rubella HOM05D005714 ORTHO05D006812 3.4e-75 286.2 355 52.4
Atru.BG.225.p Acer truncatum HOM05D005714 ORTHO05D006812 9.9e-75 284.6 352 54.0
PSO782G2399 Papaver somniferum HOM05D005714 ORTHO05D006812 9.9e-75 284.6 337 51.9
QL02p053457 Quercus lobata HOM05D005714 ORTHO05D006812 1.3e-74 284.3 354 54.5
Manes.02G065100 Manihot esculenta HOM05D005714 ORTHO05D006812 1.7e-74 283.9 352 53.7
FAN09G3422 Fragaria x ananassa HOM05D005714 ORTHO05D006812 2.9e-74 283.1 348 53.2
ClCG05G011990 Citrullus lanatus HOM05D005714 ORTHO05D006812 3.7e-74 282.7 369 51.5
CARHR197420 Cardamine hirsuta HOM05D005714 ORTHO05D006812 1.9e-73 280.4 352 52.3
Sc10g0001430 Simmondsia chinensis HOM05D005714 ORTHO05D006812 3.2e-73 279.6 350 50.0
Ah.10g037360 Amaranthus hybridus HOM05D005714 ORTHO05D006812 4.1e-73 279.3 339 52.8
Medtr6g016870 Medicago truncatula HOM05D005714 ORTHO05D006812 4.1e-73 279.3 356 51.7
Phvul.004G049100 Phaseolus vulgaris HOM05D005714 ORTHO05D006812 4.1e-73 279.3 351 51.9
ECA232G3066 Erigeron canadensis HOM05D005714 ORTHO05D006812 7.1e-73 278.5 357 51.3
Aa31LG11G13710 Aethionema arabicum HOM05D005714 ORTHO05D006812 9.2e-73 278.1 355 52.4
AT5G15880 Arabidopsis thaliana HOM05D005714 ORTHO05D006812 9.2e-73 278.1 356 51.4
AL6G26770 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 1.2e-72 277.7 356 52.0
AL6G26782 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 1.2e-72 277.7 356 52.0
Lalb_Chr21g0317991 Lupinus albus HOM05D005714 ORTHO05D006812 1.2e-72 277.7 353 51.8
Sp6g28230 Schrenkiella parvula HOM05D005714 ORTHO05D006812 1.6e-72 277.3 357 52.1
Nitab4.5_0003161g0010 Nicotiana tabacum HOM05D005714 ORTHO05D006812 2.1e-72 276.9 342 52.0
A03p07460 Brassica napus HOM05D005714 ORTHO05D006812 4.6e-72 275.8 351 51.6
Ca_20731_v3 Cicer arietinum L. HOM05D005714 ORTHO05D006812 6.0e-72 275.4 357 51.5
Duzib138G1804 Durio zibethinus HOM05D005714 ORTHO05D006812 6.0e-72 275.4 359 48.2
CAN.G551.30 Capsicum annuum HOM05D005714 ORTHO05D006812 1.0e-71 274.6 350 51.7
BraA03t10075Z Brassica rapa HOM05D005714 ORTHO05D006812 2.3e-71 273.5 351 51.6
BraA03t10072Z Brassica rapa HOM05D005714 ORTHO05D006812 5.1e-71 272.3 351 51.6
C03p08510 Brassica napus HOM05D005714 ORTHO05D006812 1.1e-70 271.2 349 51.3
C03p08640 Brassica napus HOM05D005714 ORTHO05D006812 1.5e-70 270.8 350 52.3
BolC3t13366H Brassica oleracea HOM05D005714 ORTHO05D006812 1.5e-70 270.8 350 52.3
Thhalv10015850m.g Eutrema salsugineum HOM05D005714 ORTHO05D006812 1.9e-70 270.4 356 51.4
Zm00001eb208920 Zea mays HOM05D005714 ORTHO05D006812 2.5e-70 270.0 332 51.2
BcaB08g36870 Brassica carinata HOM05D005714 ORTHO05D006812 9.6e-70 268.1 350 51.1
BolC3t13356H Brassica oleracea HOM05D005714 ORTHO05D006812 9.6e-70 268.1 349 51.0
BraA10t44382Z Brassica rapa HOM05D005714 ORTHO05D006812 1.2e-69 267.7 350 50.9
Hund16108 Selenicereus undatus HOM05D005714 ORTHO05D006812 2.8e-69 266.5 367 49.9
vmacro05584 Vaccinium macrocarpon HOM05D005714 ORTHO05D006812 3.6e-69 266.2 403 47.1
CSS0044543 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 8.1e-69 265.0 356 48.9
CSS0047938 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 8.1e-69 265.0 356 48.9
HanXRQChr15g0490211 Helianthus annuus HOM05D005714 ORTHO05D006812 2.4e-68 263.5 357 50.7
TPR.G9671 Trifolium pratense HOM05D005714 ORTHO05D006812 5.2e-68 262.3 355 50.1
arahy.Tifrunner.gnm1.ann1.AEQW57 Arachis hypogaea HOM05D005714 ORTHO05D006812 1.3e-66 257.7 351 49.0
Potri.004G105400 Populus trichocarpa HOM05D005714 ORTHO05D006812 1.7e-66 257.3 350 49.7
BolC9t58957H Brassica oleracea HOM05D005714 ORTHO05D006812 7.1e-65 251.9 356 50.0
Ciclev10012317m.g Citrus clementina HOM05D005714 ORTHO05D006812 3.0e-63 246.5 306 51.3
Lsat_1_v5_gn_4_175801 Lactuca sativa HOM05D005714 ORTHO05D006812 6.6e-63 245.4 298 52.7
arahy.Tifrunner.gnm1.ann1.R8VTVZ Arachis hypogaea HOM05D005714 ORTHO05D006812 3.3e-62 243.0 373 46.1
BcaB01g05015 Brassica carinata HOM05D005714 ORTHO05D006812 9.6e-62 241.5 340 49.1
TWI74G1644 Tripterygium wilfordii HOM05D005714 ORTHO05D006812 2.1e-61 240.4 359 47.9
Sabra04G0076700 Salix brachista HOM05D005714 ORTHO05D006812 2.6e-59 233.4 426 41.1
Lj2g0024465 Lotus japonicus HOM05D005714 ORTHO05D006812 9.9e-59 231.5 346 45.4
Gohir.A11G168300 Gossypium hirsutum HOM05D005714 ORTHO05D006812 1.9e-54 217.2 253 54.2
unitig_899.g15126 Utricularia gibba HOM05D005714 ORTHO05D006812 2.9e-50 203.4 348 44.8
Actinidia18116 Actinidia chinensis HOM05D005714 ORTHO05D006812 2.4e-49 200.3 355 43.9
TAR622G1272 Trochodendron aralioides HOM05D005714 ORTHO05D006812 9.3e-49 198.4 160 69.4
FAN05G0119 Fragaria x ananassa HOM05D005714 ORTHO05D006812 1.4e-44 184.5 209 56.0
AagrBONN_evm.TU.Sc2ySwM_344.4539 Anthoceros agrestis HOM05D005714 ORTHO05D006812 3.4e-43 179.9 304 41.4
Psat1g062640 Pisum sativum HOM05D005714 ORTHO05D006812 1.0e-42 178.3 238 49.6
RcHm_v2.0_Chr2g0163701 Rosa chinensis HOM05D005714 ORTHO05D006812 2.2e-42 177.2 142 69.7
Cfa007975 Carpinus fangiana HOM05D005714 ORTHO05D006812 1.9e-38 164.1 313 40.9
Pp3c1_6350 Physcomitrium patens HOM05D005714 ORTHO05D006812 1.6e-37 161.0 378 37.6
Solyc03g046260.2 Solanum lycopersicum HOM05D005714 ORTHO05D006812 1.2e-35 154.8 233 46.8
SMO139G0044 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 9.3e-33 145.2 290 37.2
ATR0752G125 Amborella trichopoda HOM05D005714 ORTHO05D006812 1.1e-30 138.3 135 63.7
VMungo0464G1377 Vigna mungo HOM05D005714 ORTHO05D006812 2.5e-30 137.1 232 43.5
Glyma.19G041200 Glycine max HOM05D005714 ORTHO05D006812 9.0e-28 128.6 162 51.2
ATR0752G036 Amborella trichopoda HOM05D005714 ORTHO05D006812 1.7e-26 124.4 226 43.8
MD17G1072400 Malus domestica HOM05D005714 ORTHO05D006812 2.9e-26 123.6 202 45.0
AUR62014554 Chenopodium quinoa HOM05D005714 ORTHO05D006812 4.2e-25 119.8 237 39.2
AUR62008947 Chenopodium quinoa HOM05D005714 ORTHO05D006812 2.1e-24 117.5 234 38.9
C09p61160 Brassica napus HOM05D005714 ORTHO05D006812 2.7e-24 117.1 117 59.0
Sopen03g009720 Solanum pennellii HOM05D005714 ORTHO05D006812 1.8e-23 114.4 97 62.9
Mapoly0066s0019 Marchantia polymorpha HOM05D005714 ORTHO05D006812 2.5e-22 110.5 377 32.9
SMO145G0024 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 1.4e-20 104.8 290 33.8
A10p17320 Brassica napus HOM05D000327 ORTHO05D006812 9.4e-17 92.0 227 35.7
Medtr3g067495 Medicago truncatula HOM05D005714 ORTHO05D006812 5.7e-14 82.8 95 51.6
SEGI_18448 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 1.7e-13 81.3 189 33.9
SEGI_16525 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 4.8e-13 79.7 98 46.9
RcHm_v2.0_Chr2g0163721 Rosa chinensis HOM05D005714 ORTHO05D006812 5.3e-12 76.3 66 62.1
C09p61150 Brassica napus HOM05D005714 ORTHO05D006812 2.2e-10 70.9 101 47.5
RcHm_v2.0_Chr2g0163711 Rosa chinensis HOM05D005714 ORTHO05D006812 4.7e-08 63.2 77 50.6
RcHm_v2.0_Chr2g0163621 Rosa chinensis HOM05D005714 ORTHO05D006812 8.0e-08 62.4 84 47.6
BcaB07g33635 Brassica carinata HOM05D005714 ORTHO05D006812 3.0e-07 60.5 124 39.5
BcaC04g18926 Brassica carinata HOM05D005714 ORTHO05D006812 3.0e-07 60.5 167 34.1


User provided reference genes

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