Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_027373 Vanilla planifolia HOM05D002253 ORTHO05D002351 3.6e-97 358.2 177 100.0
HPP92_021854 Vanilla planifolia HOM05D002253 ORTHO05D002351 1.2e-23 114.0 178 42.7
HPP92_000151 Vanilla planifolia HOM05D002253 ORTHO05D002351 1.3e-22 110.5 182 44.5
Nn3g17816 Nelumbo nucifera HOM05D002253 ORTHO05D002351 1.4e-16 90.5 197 38.6
PSO017G4876 Papaver somniferum HOM05D002253 ORTHO05D002351 5.3e-16 88.6 198 35.9
PSO478G2314 Papaver somniferum HOM05D002253 ORTHO05D002351 1.2e-15 87.4 197 34.5
TAR374G0921 Trochodendron aralioides HOM05D002253 ORTHO05D002351 1.5e-15 87.0 198 38.9
Duzib268G0137 Durio zibethinus HOM05D002253 ORTHO05D002351 2.0e-15 86.7 192 39.1
Nn4g23814 Nelumbo nucifera HOM05D002253 ORTHO05D002351 3.4e-15 85.9 196 35.7
Duzib248G1226 Durio zibethinus HOM05D002253 ORTHO05D002351 1.3e-14 84.0 189 36.5
MBI10_g16026_MAGBIO Magnolia biondii HOM05D002253 ORTHO05D002351 1.3e-14 84.0 195 40.0
Duzib251G0566 Durio zibethinus HOM05D002253 ORTHO05D002351 2.9e-14 82.8 193 39.4
Ca_11178_v3 Cicer arietinum L. HOM05D002253 ORTHO05D002351 1.4e-13 80.5 183 39.9
CANSAT01G2454 Cannabis sativa HOM05D002253 ORTHO05D002351 1.9e-13 80.1 185 37.8
CiPaw.15G084000 Carya illinoinensis HOM05D002253 ORTHO05D002351 1.9e-13 80.1 172 39.5
TAR371G1148 Trochodendron aralioides HOM05D002253 ORTHO05D002351 3.2e-13 79.3 202 41.6
THA.LOC104805252 Tarenaya hassleriana HOM05D002253 ORTHO05D002351 4.2e-13 79.0 172 38.4
MSTRG.2245 Avicennia marina HOM05D002253 ORTHO05D002351 1.2e-12 77.4 192 39.1
CsaV3_5G034240 Cucumis sativus L. HOM05D002253 ORTHO05D002351 1.2e-12 77.4 182 35.7
GSVIVG01011906001 Vitis vinifera HOM05D002253 ORTHO05D002351 1.2e-12 77.4 188 36.7
MELO3C012239.2 Cucumis melo HOM05D002253 ORTHO05D002351 3.5e-12 75.9 187 36.4
Haze_17470 Corylus avellana HOM05D002253 ORTHO05D002351 6.1e-12 75.1 190 34.7
ClCG05G022790 Citrullus lanatus HOM05D002253 ORTHO05D002351 7.9e-12 74.7 186 34.4
COL.COLO4_07913 Corchorus olitorius HOM05D002253 ORTHO05D002351 7.9e-12 74.7 200 37.0
Sabra15G0075100 Salix brachista HOM05D002253 ORTHO05D002351 1.0e-11 74.3 168 39.9
Manes.14G101400 Manihot esculenta HOM05D002253 ORTHO05D002351 1.3e-11 73.9 187 34.8
PSO017G1795 Papaver somniferum HOM05D002253 ORTHO05D002351 1.3e-11 73.9 109 44.0
Cpa.g.sc448.1 Carica papaya HOM05D002253 ORTHO05D002351 1.8e-11 73.6 189 35.4
Gohir.A12G167500 Gossypium hirsutum HOM05D002253 ORTHO05D002351 1.8e-11 73.6 191 35.1
Gohir.A13G054900 Gossypium hirsutum HOM05D002253 ORTHO05D002351 1.8e-11 73.6 190 35.8
CiPaw.16G064200 Carya illinoinensis HOM05D002253 ORTHO05D002351 2.3e-11 73.2 190 37.4
Gohir.D12G171100 Gossypium hirsutum HOM05D002253 ORTHO05D002351 2.3e-11 73.2 191 34.6
Gorai.008G183700 Gossypium raimondii HOM05D002253 ORTHO05D002351 2.3e-11 73.2 191 34.6
Potri.008G119800 Populus trichocarpa HOM05D002253 ORTHO05D002351 2.3e-11 73.2 193 32.6
TPR.G26279 Trifolium pratense HOM05D002253 ORTHO05D002351 2.3e-11 73.2 182 35.7
TWI75G0443 Tripterygium wilfordii HOM05D002253 ORTHO05D002351 2.3e-11 73.2 129 44.2
Cfa018604 Carpinus fangiana HOM05D002253 ORTHO05D002351 3.0e-11 72.8 183 35.5
Gorai.013G076400 Gossypium raimondii HOM05D002253 ORTHO05D002351 3.0e-11 72.8 190 35.8
Actinidia16646 Actinidia chinensis HOM05D002253 ORTHO05D002351 3.9e-11 72.4 104 49.0
Manes.05G137800 Manihot esculenta HOM05D002253 ORTHO05D002351 3.9e-11 72.4 175 38.3
Thecc.02G356300 Theobroma cacao HOM05D002253 ORTHO05D002351 3.9e-11 72.4 201 35.3
Migut.E00330 Erythranthe guttata HOM05D002253 ORTHO05D002351 5.1e-11 72.0 196 38.3
Gohir.D13G067100 Gossypium hirsutum HOM05D002253 ORTHO05D002351 5.1e-11 72.0 190 35.3
TWI31G0181 Tripterygium wilfordii HOM05D002253 ORTHO05D002351 5.1e-11 72.0 179 37.4
Peaxi162Scf00015g00812 Petunia axillaris HOM05D002253 ORTHO05D002351 6.7e-11 71.6 177 36.2
CDE07G1096 Ceratophyllum demersum HOM05D002253 ORTHO05D002351 8.7e-11 71.2 172 35.5
Dinv21099 Davidia involucrata HOM05D002253 ORTHO05D002351 8.7e-11 71.2 184 34.8
Medtr1g111060 Medicago truncatula HOM05D002253 ORTHO05D002351 8.7e-11 71.2 189 35.4
Potri.010G126000 Populus trichocarpa HOM05D002253 ORTHO05D002351 8.7e-11 71.2 187 35.8
Rhsim09G0108900 Rhododendron simsii HOM05D002253 ORTHO05D002351 8.7e-11 71.2 197 35.0
PGSC0003DMG400015874 Solanum tuberosum HOM05D002253 ORTHO05D002351 8.7e-11 71.2 187 33.7
Manes.01G012400 Manihot esculenta HOM05D002253 ORTHO05D002351 1.5e-10 70.5 177 37.9
HPP92_021598 Vanilla planifolia HOM05D002253 ORTHO05D002351 1.5e-10 70.5 129 44.2
QL01p043511 Quercus lobata HOM05D002253 ORTHO05D002351 2.5e-10 69.7 189 34.9
FAN12G2183 Fragaria x ananassa HOM05D002253 ORTHO05D002351 3.3e-10 69.3 200 32.0
FAN12G1145 Fragaria x ananassa HOM05D002253 ORTHO05D002351 4.3e-10 68.9 200 33.5
CSS0050023 Camellia sinensis var. sinensis HOM05D002253 ORTHO05D002351 5.7e-10 68.6 194 33.5
Sc04g0006530 Simmondsia chinensis HOM05D002253 ORTHO05D002351 5.7e-10 68.6 170 34.7
CSS0015690 Camellia sinensis var. sinensis HOM05D002253 ORTHO05D002351 7.4e-10 68.2 194 33.5
Lalb_Chr02g0146041 Lupinus albus HOM05D002253 ORTHO05D002351 7.4e-10 68.2 193 34.7
Oeu009782.1 Olea europaea HOM05D002253 ORTHO05D002351 7.4e-10 68.2 174 39.1
Phvul.007G026700 Phaseolus vulgaris HOM05D002253 ORTHO05D002351 7.4e-10 68.2 176 38.6
SalBow8G5368 Salvia bowleyana HOM05D002253 ORTHO05D002351 7.4e-10 68.2 199 36.7
HPP92_027122 Vanilla planifolia HOM05D002253 ORTHO05D002351 7.4e-10 68.2 124 44.4
RcHm_v2.0_Chr4g0435381 Rosa chinensis HOM05D002253 ORTHO05D002351 9.7e-10 67.8 198 31.3
SGA_v2.0_scaffold170G38753 Striga asiatica HOM05D002253 ORTHO05D002351 9.7e-10 67.8 182 35.2
TAR622G0007 Trochodendron aralioides HOM05D002253 ORTHO05D002351 9.7e-10 67.8 200 34.5
FAN07G2061 Fragaria x ananassa HOM05D002253 ORTHO05D002351 1.3e-09 67.4 199 31.7
Ciclev10032842m.g Citrus clementina HOM05D002253 ORTHO05D002351 1.6e-09 67.0 190 36.8
Glyma.20G114800 Glycine max HOM05D002253 ORTHO05D002351 1.6e-09 67.0 181 38.7
Manes.06G069300 Manihot esculenta HOM05D002253 ORTHO05D002351 1.6e-09 67.0 192 33.9
QL10p025078 Quercus lobata HOM05D002253 ORTHO05D002351 2.2e-09 66.6 177 34.5
VMungo0720G1033 Vigna mungo HOM05D002253 ORTHO05D002351 2.2e-09 66.6 175 36.0
A08p32340 Brassica napus HOM05D002253 ORTHO05D002351 2.8e-09 66.2 175 33.7
BraA08t35157Z Brassica rapa HOM05D002253 ORTHO05D002351 2.8e-09 66.2 175 33.7
Cc00_g12390 Coffea canephora HOM05D002253 ORTHO05D002351 2.8e-09 66.2 201 33.8
Eucgr.B03018 Eucalyptus grandis HOM05D002253 ORTHO05D002351 2.8e-09 66.2 204 30.4
FvH4_4g27540 Fragaria vesca HOM05D002253 ORTHO05D002351 2.8e-09 66.2 200 31.5
Peaxi162Scf00086g00101 Petunia axillaris HOM05D002253 ORTHO05D002351 2.8e-09 66.2 186 35.5
Solyc04g007130.1 Solanum lycopersicum HOM05D002253 ORTHO05D002351 2.8e-09 66.2 186 32.8
PGSC0003DMG400028789 Solanum tuberosum HOM05D002253 ORTHO05D002351 2.8e-09 66.2 189 37.6
Nitab4.5_0011024g0010 Nicotiana tabacum HOM05D002253 ORTHO05D002351 3.7e-09 65.9 198 34.3
Sabra08G0090800 Salix brachista HOM05D002253 ORTHO05D002351 3.7e-09 65.9 115 44.3
THA.LOC104825702 Tarenaya hassleriana HOM05D002253 ORTHO05D002351 3.7e-09 65.9 182 36.3
TWI79G0250 Tripterygium wilfordii HOM05D002253 ORTHO05D002351 3.7e-09 65.9 103 44.7
BcaC07g38689 Brassica carinata HOM05D002253 ORTHO05D002351 4.8e-09 65.5 178 33.1
C08p16090 Brassica napus HOM05D002253 ORTHO05D002351 4.8e-09 65.5 178 33.1
BolC8t49232H Brassica oleracea HOM05D002253 ORTHO05D002351 4.8e-09 65.5 178 33.1
Potri.015G054300 Populus trichocarpa HOM05D002253 ORTHO05D002351 4.8e-09 65.5 172 34.9
Sopen04g002220 Solanum pennellii HOM05D002253 ORTHO05D002351 4.8e-09 65.5 186 32.8
Hma1.2p1_0061F.1_g034080 Hydrangea macrophylla HOM05D002253 ORTHO05D002351 8.2e-09 64.7 189 32.8
Peaxi162Scf00382g00023 Petunia axillaris HOM05D002253 ORTHO05D002351 8.2e-09 64.7 185 35.7
Aqoxy3G00318 Aquilegia oxysepala HOM05D002253 ORTHO05D002351 1.4e-08 63.9 192 34.4
Hma1.2p1_1001F.1_g246520 Hydrangea macrophylla HOM05D002253 ORTHO05D002351 1.4e-08 63.9 165 37.6
Sed0022428 Sechium edule HOM05D002253 ORTHO05D002351 1.4e-08 63.9 190 35.3
MSTRG.13521 Avicennia marina HOM05D002253 ORTHO05D002351 1.8e-08 63.5 197 36.0
HanXRQChr08g0214131 Helianthus annuus HOM05D002253 ORTHO05D002351 1.8e-08 63.5 181 34.3
Lj5g0006025 Lotus japonicus HOM05D002253 ORTHO05D002351 1.8e-08 63.5 96 46.9
CDE06G2819 Ceratophyllum demersum HOM05D002253 ORTHO05D002351 2.4e-08 63.2 168 35.1
Thhalv10008809m.g Eutrema salsugineum HOM05D002253 ORTHO05D002351 2.4e-08 63.2 182 33.5
Glyma.10G275000 Glycine max HOM05D002253 ORTHO05D002351 2.4e-08 63.2 118 43.2
MBI16_g16414_MAGBIO Magnolia biondii HOM05D002253 ORTHO05D002351 2.4e-08 63.2 134 42.5
Nitab4.5_0004895g0030 Nicotiana tabacum HOM05D002253 ORTHO05D002351 2.4e-08 63.2 196 33.2
Prupe.1G309700 Prunus persica HOM05D002253 ORTHO05D002351 2.4e-08 63.2 203 32.5
Actinidia14884 Actinidia chinensis HOM05D002253 ORTHO05D002351 3.1e-08 62.8 106 49.1
Haze_18660 Corylus avellana HOM05D002253 ORTHO05D002351 3.1e-08 62.8 166 36.7
FAN22G1215 Fragaria x ananassa HOM05D002253 ORTHO05D002351 3.1e-08 62.8 199 32.2
Sopen03g038440 Solanum pennellii HOM05D002253 ORTHO05D002351 3.1e-08 62.8 200 35.5
Carub.0001s1308 Capsella rubella HOM05D002253 ORTHO05D002351 4.1e-08 62.4 184 33.7
CAN.G438.133 Capsicum annuum HOM05D002253 ORTHO05D002351 5.3e-08 62.0 184 34.8
CDE06G0372 Ceratophyllum demersum HOM05D002253 ORTHO05D002351 5.3e-08 62.0 99 46.5
Nitab4.5_0010492g0010 Nicotiana tabacum HOM05D002253 ORTHO05D002351 5.3e-08 62.0 199 36.2
Actinidia38380 Actinidia chinensis HOM05D002253 ORTHO05D002351 6.9e-08 61.6 114 45.6
Lsat_1_v5_gn_3_59460 Lactuca sativa HOM05D002253 ORTHO05D002351 6.9e-08 61.6 187 36.4
Lj3P1016T15 Lonicera japonica HOM05D002253 ORTHO05D002351 6.9e-08 61.6 106 43.4
Atru.chr11.1281 Acer truncatum HOM05D002253 ORTHO05D002351 9.0e-08 61.2 104 47.1
Atru.chr9.822 Acer truncatum HOM05D002253 ORTHO05D002351 9.0e-08 61.2 185 31.9
BcaC06g33945 Brassica carinata HOM05D002253 ORTHO05D002351 9.0e-08 61.2 179 31.8
C07p34900 Brassica napus HOM05D002253 ORTHO05D002351 9.0e-08 61.2 179 31.8
Lsat_1_v5_gn_4_18360 Lactuca sativa HOM05D002253 ORTHO05D002351 9.0e-08 61.2 151 35.1
Solyc06g069150.1 Solanum lycopersicum HOM05D002253 ORTHO05D002351 9.0e-08 61.2 181 36.5
Zm00001eb335140 Zea mays HOM05D002253 ORTHO05D002351 9.0e-08 61.2 99 45.5
ClCG08G005250 Citrullus lanatus HOM05D002253 ORTHO05D002351 1.2e-07 60.8 123 42.3
DCAR_011350 Daucus carota HOM05D002253 ORTHO05D002351 1.2e-07 60.8 178 32.0
PGSC0003DMG400005716 Solanum tuberosum HOM05D002253 ORTHO05D002351 1.2e-07 60.8 199 33.2
MELO3C011565.2 Cucumis melo HOM05D002253 ORTHO05D002351 1.5e-07 60.5 124 41.1
CsaV3_6G003450 Cucumis sativus L. HOM05D002253 ORTHO05D002351 1.5e-07 60.5 123 40.7
ATR1125G083 Amborella trichopoda HOM05D002253 ORTHO05D002351 2.0e-07 60.1 203 34.5
BolC7t44021H Brassica oleracea HOM05D002253 ORTHO05D002351 2.0e-07 60.1 179 31.8
Sp1g11860 Schrenkiella parvula HOM05D002253 ORTHO05D002351 2.0e-07 60.1 184 32.1
Solyc03g119610.1 Solanum lycopersicum HOM05D002253 ORTHO05D002351 2.0e-07 60.1 206 33.0
Psat6g228840 Pisum sativum HOM05D002253 ORTHO05D002351 2.6e-07 59.7 178 35.4
Os01g0131300 Oryza sativa ssp. japonica HOM05D002253 ORTHO05D002351 3.4e-07 59.3 87 43.7
RcHm_v2.0_Chr7g0185281 Rosa chinensis HOM05D002253 ORTHO05D002351 3.4e-07 59.3 199 33.7
BcaB07g30251 Brassica carinata HOM05D002253 ORTHO05D002351 4.5e-07 58.9 170 31.2
Hma1.2p1_0592F.1_g185326 Hydrangea macrophylla HOM05D002253 ORTHO05D002351 4.5e-07 58.9 147 35.4
Hma1.2p1_2265F.1_g318410 Hydrangea macrophylla HOM05D002253 ORTHO05D002351 4.5e-07 58.9 147 35.4
MD13G1042900 Malus domestica HOM05D002253 ORTHO05D002351 4.5e-07 58.9 105 44.8
MD16G1043800 Malus domestica HOM05D002253 ORTHO05D002351 4.5e-07 58.9 213 31.9
CAN.G423.8 Capsicum annuum HOM05D002253 ORTHO05D002351 5.9e-07 58.5 183 35.5
COL.COLO4_04673 Corchorus olitorius HOM05D002253 ORTHO05D002351 5.9e-07 58.5 172 36.6
Duzib084G0173 Durio zibethinus HOM05D002253 ORTHO05D002351 5.9e-07 58.5 174 35.1
Rhsim12G0083100 Rhododendron simsii HOM05D002253 ORTHO05D002351 5.9e-07 58.5 101 45.5
SalBow4G2594 Salvia bowleyana HOM05D002253 ORTHO05D002351 5.9e-07 58.5 163 38.0
Sopen06g026430 Solanum pennellii HOM05D002253 ORTHO05D002351 5.9e-07 58.5 190 34.7
Nitab4.5_0017241g0010 Nicotiana tabacum HOM05D002253 ORTHO05D002351 7.7e-07 58.2 196 33.7
PGSC0003DMG400012967 Solanum tuberosum HOM05D002253 ORTHO05D002351 7.7e-07 58.2 176 36.9
FvH4_5g12280 Fragaria vesca HOM05D002253 ORTHO05D002351 1.0e-06 57.8 205 32.2
FAN18G0057 Fragaria x ananassa HOM05D002253 ORTHO05D002351 1.0e-06 57.8 205 32.2
FAN18G1637 Fragaria x ananassa HOM05D002253 ORTHO05D002351 1.0e-06 57.8 205 32.2
Sopen05g005330 Solanum pennellii HOM05D002253 ORTHO05D002351 1.0e-06 57.8 183 36.1
TAR629G0720 Trochodendron aralioides HOM05D002253 ORTHO05D002351 1.0e-06 57.8 84 51.2
Zm00001eb125340 Zea mays HOM05D002253 ORTHO05D002351 1.0e-06 57.8 124 39.5
BcaB03g13144 Brassica carinata HOM05D002253 ORTHO05D002351 1.3e-06 57.4 182 32.4
CSS0003643 Camellia sinensis var. sinensis HOM05D002253 ORTHO05D002351 1.3e-06 57.4 116 41.4
PGR083G0350 Punica granatum HOM05D002253 ORTHO05D002351 1.3e-06 57.4 157 37.6
SHI26913 Sapria himalayana HOM05D002253 ORTHO05D002351 1.3e-06 57.4 88 48.9
Lalb_Chr21g0308971 Lupinus albus HOM05D002253 ORTHO05D002351 1.7e-06 57.0 98 44.9
Sed0004753 Sechium edule HOM05D002253 ORTHO05D002351 1.7e-06 57.0 123 41.5
CARHR013740 Cardamine hirsuta HOM05D002253 ORTHO05D002351 2.2e-06 56.6 170 31.8
Eucgr.K02217 Eucalyptus grandis HOM05D002253 ORTHO05D002351 2.2e-06 56.6 115 41.7
Thhalv10005009m.g Eutrema salsugineum HOM05D002253 ORTHO05D002351 2.2e-06 56.6 170 32.4
Nitab4.5_0000057g0330 Nicotiana tabacum HOM05D002253 ORTHO05D002351 2.2e-06 56.6 186 32.8
FAN08G0576 Fragaria x ananassa HOM05D002253 ORTHO05D002351 3.8e-06 55.8 206 33.0
Nitab4.5_0007985g0040 Nicotiana tabacum HOM05D002253 ORTHO05D002351 3.8e-06 55.8 197 35.5
Oeu027682.1 Olea europaea HOM05D002253 ORTHO05D002351 3.8e-06 55.8 200 37.0
arahy.Tifrunner.gnm1.ann1.AI2V23 Arachis hypogaea HOM05D002253 ORTHO05D002351 5.0e-06 55.5 154 33.8
A06p42420 Brassica napus HOM05D002253 ORTHO05D002351 5.0e-06 55.5 171 31.0
BraA06t27157Z Brassica rapa HOM05D002253 ORTHO05D002351 5.0e-06 55.5 171 31.0
Ciclev10022179m.g Citrus clementina HOM05D002253 ORTHO05D002351 5.0e-06 55.5 180 32.2
CsaV3_1G006570 Cucumis sativus L. HOM05D002253 ORTHO05D002351 5.0e-06 55.5 90 44.4
ECA233G6013 Erigeron canadensis HOM05D002253 ORTHO05D002351 5.0e-06 55.5 186 31.7
HanXRQChr12g0364641 Helianthus annuus HOM05D002253 ORTHO05D002351 5.0e-06 55.5 192 31.8
Oeu014307.1 Olea europaea HOM05D002253 ORTHO05D002351 5.0e-06 55.5 197 35.5
BcaC06g31109 Brassica carinata HOM05D002253 ORTHO05D002351 6.5e-06 55.1 168 31.0
Sed0015458 Sechium edule HOM05D002253 ORTHO05D002351 6.5e-06 55.1 77 45.5
Aa31LG2G6490 Aethionema arabicum HOM05D002253 ORTHO05D002351 8.5e-06 54.7 169 31.4
BcaC03g17296 Brassica carinata HOM05D002253 ORTHO05D002351 8.5e-06 54.7 168 30.4
C02p52400 Brassica napus HOM05D002253 ORTHO05D002351 8.5e-06 54.7 168 30.4
Gohir.A11G005700 Gossypium hirsutum HOM05D002253 ORTHO05D002351 8.5e-06 54.7 183 31.7
Sp2g15110 Schrenkiella parvula HOM05D002253 ORTHO05D002351 8.5e-06 54.7 88 42.0
TWI81G0977 Tripterygium wilfordii HOM05D002253 ORTHO05D002351 8.5e-06 54.7 153 36.6


User provided reference genes

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