Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_027352 Vanilla planifolia HOM05D004754 ORTHO05D005566 3.6e-48 194.5 93 100.0
Sed0000755 Sechium edule HOM05D004754 ORTHO05D005566 2.7e-11 72.0 87 42.5
CDE02G1350 Ceratophyllum demersum HOM05D004754 ORTHO05D005566 6.0e-11 70.9 90 40.0
Lalb_Chr12g0204311 Lupinus albus HOM05D004754 ORTHO05D005566 2.3e-10 68.9 71 47.9
MBI09_g11913_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 2.3e-10 68.9 71 49.3
MBI10_g08558_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 2.3e-10 68.9 71 49.3
Potri.007G112300 Populus trichocarpa HOM05D004754 ORTHO05D005566 2.3e-10 68.9 71 46.5
MELO3C015347.2 Cucumis melo HOM05D004754 ORTHO05D005566 5.1e-10 67.8 71 46.5
Sabra07G0091800 Salix brachista HOM05D004754 ORTHO05D005566 5.1e-10 67.8 89 42.7
TAR624G1057 Trochodendron aralioides HOM05D004754 ORTHO05D005566 6.6e-10 67.4 67 49.3
Atru.chr10.946 Acer truncatum HOM05D004754 ORTHO05D005566 8.7e-10 67.0 71 47.9
AUR62008508 Chenopodium quinoa HOM05D004754 ORTHO05D005566 8.7e-10 67.0 66 48.5
CsaV3_1G039230 Cucumis sativus L. HOM05D004754 ORTHO05D005566 8.7e-10 67.0 71 46.5
Duzib248G0043 Durio zibethinus HOM05D004754 ORTHO05D005566 8.7e-10 67.0 71 47.9
Psat5g233520 Pisum sativum HOM05D004754 ORTHO05D005566 8.7e-10 67.0 89 43.8
Hund19582 Selenicereus undatus HOM05D004754 ORTHO05D005566 8.7e-10 67.0 66 50.0
Thecc.02G011000 Theobroma cacao HOM05D004754 ORTHO05D005566 8.7e-10 67.0 71 47.9
Atru.chr10.952 Acer truncatum HOM05D004754 ORTHO05D005566 1.1e-09 66.6 71 46.5
ATR0584G072 Amborella trichopoda HOM05D004754 ORTHO05D005566 1.1e-09 66.6 66 48.5
Ca_14146_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 1.1e-09 66.6 93 44.1
TAR626G0708 Trochodendron aralioides HOM05D004754 ORTHO05D005566 1.1e-09 66.6 67 49.3
ECA240G2987 Erigeron canadensis HOM05D004754 ORTHO05D005566 1.5e-09 66.2 66 50.0
Potri.017G048600 Populus trichocarpa HOM05D004754 ORTHO05D005566 1.9e-09 65.9 89 41.6
ClCG03G006380 Citrullus lanatus HOM05D004754 ORTHO05D005566 2.5e-09 65.5 90 40.0
HanXRQChr12g0360561 Helianthus annuus HOM05D004754 ORTHO05D005566 2.5e-09 65.5 71 47.9
Manes.10G102700 Manihot esculenta HOM05D004754 ORTHO05D005566 2.5e-09 65.5 89 43.8
PSO210G1456 Papaver somniferum HOM05D004754 ORTHO05D005566 2.5e-09 65.5 71 45.1
PSO210G6921 Papaver somniferum HOM05D004754 ORTHO05D005566 2.5e-09 65.5 71 45.1
PSO675G6933 Papaver somniferum HOM05D004754 ORTHO05D005566 2.5e-09 65.5 87 41.4
Zm00001eb126310 Zea mays HOM05D004754 ORTHO05D005566 2.5e-09 65.5 104 41.3
Cpa.g.sc17.70 Carica papaya HOM05D004754 ORTHO05D005566 3.3e-09 65.1 71 46.5
Glyma.02G261300 Glycine max HOM05D004754 ORTHO05D005566 3.3e-09 65.1 87 41.4
Medtr0393s0030 Medicago truncatula HOM05D004754 ORTHO05D005566 3.3e-09 65.1 71 46.5
Medtr3g010310 Medicago truncatula HOM05D004754 ORTHO05D005566 3.3e-09 65.1 88 43.2
Lj1P1166T28 Lonicera japonica HOM05D004754 ORTHO05D005566 4.3e-09 64.7 66 48.5
Psat0s5166g0080 Pisum sativum HOM05D004754 ORTHO05D005566 4.3e-09 64.7 87 41.4
CSS0038452 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 5.6e-09 64.3 66 48.5
CANSAT64G0220 Cannabis sativa HOM05D004754 ORTHO05D005566 5.6e-09 64.3 71 45.1
Eucgr.E02475 Eucalyptus grandis HOM05D004754 ORTHO05D005566 5.6e-09 64.3 89 40.4
Eucgr.K03201 Eucalyptus grandis HOM05D004754 ORTHO05D005566 5.6e-09 64.3 90 38.9
FvH4_2g14961 Fragaria vesca HOM05D004754 ORTHO05D005566 5.6e-09 64.3 71 45.1
Lj2g0020778 Lotus japonicus HOM05D004754 ORTHO05D005566 5.6e-09 64.3 93 40.9
QL08p010099 Quercus lobata HOM05D004754 ORTHO05D005566 5.6e-09 64.3 73 46.6
Dinv15895 Davidia involucrata HOM05D004754 ORTHO05D005566 7.3e-09 63.9 66 48.5
Lsat_1_v5_gn_9_95201 Lactuca sativa HOM05D004754 ORTHO05D005566 7.3e-09 63.9 71 45.1
AUR62021582 Chenopodium quinoa HOM05D004754 ORTHO05D005566 9.6e-09 63.5 66 45.5
Ca_02551_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 9.6e-09 63.5 91 44.0
DCAR_005794 Daucus carota HOM05D004754 ORTHO05D005566 9.6e-09 63.5 71 45.1
Gohir.A08G179300 Gossypium hirsutum HOM05D004754 ORTHO05D005566 9.6e-09 63.5 71 43.7
Prupe.1G099600 Prunus persica HOM05D004754 ORTHO05D005566 9.6e-09 63.5 90 37.8
RcHm_v2.0_Chr5g0015381 Rosa chinensis HOM05D004754 ORTHO05D005566 9.6e-09 63.5 71 45.1
RcHm_v2.0_Chr5g0052721 Rosa chinensis HOM05D004754 ORTHO05D005566 9.6e-09 63.5 71 45.1
CSS0007960 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 1.3e-08 63.2 66 47.0
CiPaw.12G121800 Carya illinoinensis HOM05D004754 ORTHO05D005566 1.3e-08 63.2 66 48.5
Ciclev10015850m.g Citrus clementina HOM05D004754 ORTHO05D005566 1.3e-08 63.2 71 46.5
FAN15G1860 Fragaria x ananassa HOM05D004754 ORTHO05D005566 1.3e-08 63.2 71 43.7
Gohir.D08G197900 Gossypium hirsutum HOM05D004754 ORTHO05D005566 1.3e-08 63.2 92 38.0
Gorai.004G208700 Gossypium raimondii HOM05D004754 ORTHO05D005566 1.3e-08 63.2 92 38.0
QL05p054004 Quercus lobata HOM05D004754 ORTHO05D005566 1.3e-08 63.2 71 46.5
Aqoxy7G03057 Aquilegia oxysepala HOM05D004754 ORTHO05D005566 1.6e-08 62.8 71 46.5
SGA_v2.0_scaffold172G38987 Striga asiatica HOM05D004754 ORTHO05D005566 1.6e-08 62.8 73 45.2
TWI53G1117 Tripterygium wilfordii HOM05D004754 ORTHO05D005566 1.6e-08 62.8 71 43.7
Glyma.14G055800 Glycine max HOM05D004754 ORTHO05D005566 2.1e-08 62.4 87 40.2
MD17G1076300 Malus domestica HOM05D004754 ORTHO05D005566 2.1e-08 62.4 71 45.1
Rhsim13G0119600 Rhododendron simsii HOM05D004754 ORTHO05D005566 2.1e-08 62.4 71 45.1
vmacro03406 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 2.1e-08 62.4 66 47.0
vmacro08577 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 2.1e-08 62.4 66 48.5
AL6G49030 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 2.8e-08 62.0 90 35.6
CARHR252140 Cardamine hirsuta HOM05D004754 ORTHO05D005566 2.8e-08 62.0 90 37.8
Cfa020535 Carpinus fangiana HOM05D004754 ORTHO05D005566 2.8e-08 62.0 71 46.5
FAN24G0458 Fragaria x ananassa HOM05D004754 ORTHO05D005566 2.8e-08 62.0 71 43.7
Oeu010398.1 Olea europaea HOM05D004754 ORTHO05D005566 2.8e-08 62.0 67 46.3
Oeu018596.1 Olea europaea HOM05D004754 ORTHO05D005566 2.8e-08 62.0 67 46.3
TPR.G33233 Trifolium pratense HOM05D004754 ORTHO05D005566 2.8e-08 62.0 71 43.7
VMungo1309G0019 Vigna mungo HOM05D004754 ORTHO05D005566 2.8e-08 62.0 92 43.5
COL.COLO4_17670 Corchorus olitorius HOM05D004754 ORTHO05D005566 3.6e-08 61.6 85 40.0
Rhsim01G0266600 Rhododendron simsii HOM05D004754 ORTHO05D005566 3.6e-08 61.6 71 43.7
Sc12g0003070 Simmondsia chinensis HOM05D004754 ORTHO05D005566 3.6e-08 61.6 66 45.5
AT4G05440 Arabidopsis thaliana HOM05D004754 ORTHO05D005566 4.8e-08 61.2 88 35.2
Manes.07G037300 Manihot esculenta HOM05D004754 ORTHO05D005566 4.8e-08 61.2 93 38.7
Phvul.009G217100 Phaseolus vulgaris HOM05D004754 ORTHO05D005566 4.8e-08 61.2 71 45.1
Hma1.2p1_1418F.1_g282250 Hydrangea macrophylla HOM05D004754 ORTHO05D005566 6.2e-08 60.8 66 45.5
Lsat_1_v5_gn_9_95240 Lactuca sativa HOM05D004754 ORTHO05D005566 6.2e-08 60.8 71 43.7
GSVIVG01021588001 Vitis vinifera HOM05D004754 ORTHO05D005566 6.2e-08 60.8 71 43.7
BcaC04g23945 Brassica carinata HOM05D004754 ORTHO05D005566 8.1e-08 60.5 90 36.7
C09p03030 Brassica napus HOM05D004754 ORTHO05D005566 8.1e-08 60.5 90 36.7
EL10Ac5g11113 Beta vulgaris HOM05D004754 ORTHO05D005566 1.1e-07 60.1 66 48.5
A09p02940 Brassica napus HOM05D004754 ORTHO05D005566 1.1e-07 60.1 73 39.7
BraA09t35937Z Brassica rapa HOM05D004754 ORTHO05D005566 1.1e-07 60.1 73 39.7
Gohir.D13G114400 Gossypium hirsutum HOM05D004754 ORTHO05D005566 1.1e-07 60.1 92 37.0
Gorai.013G128400 Gossypium raimondii HOM05D004754 ORTHO05D005566 1.1e-07 60.1 92 37.0
RcHm_v2.0_Chr5g0052651 Rosa chinensis HOM05D004754 ORTHO05D005566 1.1e-07 60.1 71 43.7
BcaB01g01919 Brassica carinata HOM05D004754 ORTHO05D005566 1.4e-07 59.7 71 40.8
Dinv32196 Davidia involucrata HOM05D004754 ORTHO05D005566 1.4e-07 59.7 66 47.0
Thhalv10028820m.g Eutrema salsugineum HOM05D004754 ORTHO05D005566 1.4e-07 59.7 87 36.8
Prupe.3G237900 Prunus persica HOM05D004754 ORTHO05D005566 1.4e-07 59.7 71 42.3
Ah.02g113940 Amaranthus hybridus HOM05D004754 ORTHO05D005566 1.8e-07 59.3 66 45.5
CAN.G1231.9 Capsicum annuum HOM05D004754 ORTHO05D005566 1.8e-07 59.3 66 45.5
CAN.G3385.2 Capsicum annuum HOM05D004754 ORTHO05D005566 1.8e-07 59.3 66 45.5
Migut.B00386 Erythranthe guttata HOM05D004754 ORTHO05D005566 1.8e-07 59.3 66 42.4
MD09G1087500 Malus domestica HOM05D004754 ORTHO05D005566 1.8e-07 59.3 87 37.9
Sopen01g049820 Solanum pennellii HOM05D004754 ORTHO05D005566 1.8e-07 59.3 66 45.5
GSVIVG01027347001 Vitis vinifera HOM05D004754 ORTHO05D005566 1.8e-07 59.3 87 39.1
Nitab4.5_0005392g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 2.4e-07 58.9 66 45.5
Cc02_g19240 Coffea canephora HOM05D004754 ORTHO05D005566 4.0e-07 58.2 66 47.0
Nitab4.5_0002815g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 4.0e-07 58.2 66 47.0
MSTRG.16715 Avicennia marina HOM05D004754 ORTHO05D005566 5.3e-07 57.8 70 40.0
BolC9t53233H Brassica oleracea HOM05D004754 ORTHO05D005566 6.9e-07 57.4 71 38.0
Psat5g233560 Pisum sativum HOM05D004754 ORTHO05D005566 9.0e-07 57.0 91 39.6
Potri.017G049500 Populus trichocarpa HOM05D004754 ORTHO05D005566 9.0e-07 57.0 39 56.4
Sp6g03640 Schrenkiella parvula HOM05D004754 ORTHO05D005566 1.2e-06 56.6 71 38.0
THA.LOC104812357 Tarenaya hassleriana HOM05D004754 ORTHO05D005566 1.2e-06 56.6 93 39.8
AUR62001036 Chenopodium quinoa HOM05D004754 ORTHO05D005566 1.5e-06 56.2 69 40.6
SalBow6G1352 Salvia bowleyana HOM05D004754 ORTHO05D005566 2.6e-06 55.5 66 39.4
unitig_21.g20734 Utricularia gibba HOM05D004754 ORTHO05D005566 2.6e-06 55.5 38 57.9
Carub.0006s3335 Capsella rubella HOM05D004754 ORTHO05D005566 4.4e-06 54.7 87 35.6
AUR62004920 Chenopodium quinoa HOM05D004754 ORTHO05D005566 7.6e-06 53.9 66 43.9
PGR031G3887 Punica granatum HOM05D004754 ORTHO05D005566 9.9e-06 53.5 88 38.6


User provided reference genes

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