Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_027307 Vanilla planifolia HOM05D001031 ORTHO05D000857 4.0e-63 244.6 123 100.0
Dinv37707 Davidia involucrata HOM05D000114 ORTHO05D000857 2.8e-24 115.5 125 48.8
FvH4_5g01210 Fragaria vesca HOM05D001031 ORTHO05D000857 2.8e-24 115.5 126 50.0
FAN18G3641 Fragaria x ananassa HOM05D001031 ORTHO05D000857 2.8e-24 115.5 126 50.0
Nn6g34324 Nelumbo nucifera HOM05D001031 ORTHO05D000857 2.8e-24 115.5 124 50.0
FAN04G0527 Fragaria x ananassa HOM05D001031 ORTHO05D000857 4.8e-24 114.8 126 48.4
FAN13G2178 Fragaria x ananassa HOM05D001031 ORTHO05D000857 8.2e-24 114.0 126 50.0
DCAR_000892 Daucus carota HOM05D001031 ORTHO05D000857 1.8e-23 112.8 125 50.4
Dinv39037 Davidia involucrata HOM05D001031 ORTHO05D000857 1.8e-23 112.8 124 52.4
Sed0004189 Sechium edule HOM05D001031 ORTHO05D000857 1.8e-23 112.8 125 50.4
TAR629G2411 Trochodendron aralioides HOM05D001031 ORTHO05D000857 1.8e-23 112.8 124 49.2
RcHm_v2.0_Chr7g0199881 Rosa chinensis HOM05D001031 ORTHO05D000857 4.1e-23 111.7 126 48.4
FAN08G2622 Fragaria x ananassa HOM05D001031 ORTHO05D000857 5.3e-23 111.3 126 48.4
CANSAT21G0026 Cannabis sativa HOM05D001031 ORTHO05D000857 9.0e-23 110.5 134 47.0
PSO782G0673 Papaver somniferum HOM05D001031 ORTHO05D000857 9.0e-23 110.5 124 48.4
Manes.01G069900 Manihot esculenta HOM05D001031 ORTHO05D000857 2.0e-22 109.4 134 48.5
GSVIVG01019888001 Vitis vinifera HOM05D001031 ORTHO05D000857 2.0e-22 109.4 129 47.3
PSO478G3211 Papaver somniferum HOM05D001031 ORTHO05D000857 5.9e-22 107.8 124 47.6
Actinidia14012 Actinidia chinensis HOM05D003763 ORTHO05D004315 7.6e-22 107.5 123 48.0
Cfa012073 Carpinus fangiana HOM05D001031 ORTHO05D000857 1.7e-21 106.3 118 50.0
Duzib205G1613 Durio zibethinus HOM05D001031 ORTHO05D000857 1.7e-21 106.3 124 47.6
Thecc.03G268100 Theobroma cacao HOM05D001031 ORTHO05D000857 1.7e-21 106.3 124 45.2
CiPaw.11G143100 Carya illinoinensis HOM05D001031 ORTHO05D000857 5.0e-21 104.8 117 50.4
Gohir.A09G193700 Gossypium hirsutum HOM05D001031 ORTHO05D000857 8.5e-21 104.0 122 48.4
Potri.001G112800 Populus trichocarpa HOM05D001031 ORTHO05D000857 1.1e-20 103.6 129 46.5
AUR62010564 Chenopodium quinoa HOM05D001031 ORTHO05D000857 1.4e-20 103.2 127 46.5
MSTRG.12033 Avicennia marina HOM05D001031 ORTHO05D000857 1.9e-20 102.8 125 47.2
Sabra01G0086200 Salix brachista HOM05D001031 ORTHO05D000857 1.9e-20 102.8 129 45.0
Ah.12g057840 Amaranthus hybridus HOM05D001031 ORTHO05D000857 2.5e-20 102.4 131 45.0
AUR62017325 Chenopodium quinoa HOM05D001031 ORTHO05D000857 2.5e-20 102.4 127 46.5
HanXRQChr17g0533821 Helianthus annuus HOM05D001031 ORTHO05D000857 2.5e-20 102.4 127 47.2
ECA246G0805 Erigeron canadensis HOM05D001031 ORTHO05D000857 3.2e-20 102.1 126 46.0
CAN.G981.60 Capsicum annuum HOM05D001031 ORTHO05D000857 5.5e-20 101.3 124 45.2
EL10Ac5g12687 Beta vulgaris HOM05D001031 ORTHO05D000857 9.3e-20 100.5 131 44.3
Lsat_1_v5_gn_3_4481 Lactuca sativa HOM05D001031 ORTHO05D000857 1.6e-19 99.8 126 46.8
Haze_08986 Corylus avellana HOM05D001031 ORTHO05D000857 2.1e-19 99.4 118 48.3
Prupe.5G087200 Prunus persica HOM05D001031 ORTHO05D000857 2.1e-19 99.4 124 48.4
Aqoxy7G00503 Aquilegia oxysepala HOM05D001031 ORTHO05D000857 3.6e-19 98.6 125 44.8
MD00G1122700 Malus domestica HOM05D001031 ORTHO05D000857 3.6e-19 98.6 124 46.0
Eucgr.D01942 Eucalyptus grandis HOM05D001031 ORTHO05D000857 4.6e-19 98.2 123 43.9
Glyma.04G124500 Glycine max HOM05D001031 ORTHO05D000857 4.6e-19 98.2 128 46.9
Ca_25858_v3 Cicer arietinum L. HOM05D001031 ORTHO05D000857 7.9e-19 97.4 122 48.4
TWI60G0074 Tripterygium wilfordii HOM05D001031 ORTHO05D000857 1.0e-18 97.1 130 43.1
PGSC0003DMG400022733 Solanum tuberosum HOM05D001031 ORTHO05D000857 1.4e-18 96.7 122 44.3
TPR.G5097 Trifolium pratense HOM05D001031 ORTHO05D000857 1.8e-18 96.3 126 45.2
MELO3C005614.2 Cucumis melo HOM05D001031 ORTHO05D000857 2.3e-18 95.9 125 44.0
Lj8P243T16 Lonicera japonica HOM05D001031 ORTHO05D000857 3.0e-18 95.5 113 48.7
Sabra03G0083400 Salix brachista HOM05D001031 ORTHO05D000857 3.0e-18 95.5 126 47.6
Migut.A00896 Erythranthe guttata HOM05D001031 ORTHO05D000857 3.9e-18 95.1 133 46.6
Potri.003G119400 Populus trichocarpa HOM05D001031 ORTHO05D000857 3.9e-18 95.1 124 46.8
Gorai.004G206200 Gossypium raimondii HOM05D001031 ORTHO05D000857 5.1e-18 94.7 113 47.8
HanXRQChr13g0415771 Helianthus annuus HOM05D001031 ORTHO05D000857 5.1e-18 94.7 103 50.5
Ciclev10021289m.g Citrus clementina HOM05D001031 ORTHO05D000857 8.8e-18 94.0 110 51.8
ATR0661G515 Amborella trichopoda HOM05D001031 ORTHO05D000857 1.1e-17 93.6 125 44.0
Gohir.D08G195400 Gossypium hirsutum HOM05D001031 ORTHO05D000857 1.1e-17 93.6 113 46.9
Medtr3g010800 Medicago truncatula HOM05D001031 ORTHO05D000857 1.1e-17 93.6 128 45.3
Glyma.06G313800 Glycine max HOM05D001031 ORTHO05D000857 1.5e-17 93.2 128 46.1
Gohir.A08G177100 Gossypium hirsutum HOM05D001031 ORTHO05D000857 1.5e-17 93.2 113 46.0
Lalb_Chr18g0048221 Lupinus albus HOM05D001031 ORTHO05D000857 1.5e-17 93.2 118 47.5
Glyma.06G313900 Glycine max HOM05D001031 ORTHO05D000857 1.9e-17 92.8 128 44.5
Rhsim07G0096400 Rhododendron simsii HOM05D001031 ORTHO05D000857 2.5e-17 92.4 125 44.0
MSTRG.1909 Avicennia marina HOM05D001031 ORTHO05D000857 4.3e-17 91.7 120 42.5
MD04G1070700 Malus domestica HOM05D001031 ORTHO05D000857 5.7e-17 91.3 105 51.4
Actinidia02061 Actinidia chinensis HOM05D001031 ORTHO05D000857 9.7e-17 90.5 109 46.8
ClCG01G003310 Citrullus lanatus HOM05D001031 ORTHO05D000857 9.7e-17 90.5 98 53.1
Cc08_g13750 Coffea canephora HOM05D001031 ORTHO05D000857 9.7e-17 90.5 124 41.1
Oeu056819.1 Olea europaea HOM05D001031 ORTHO05D000857 1.7e-16 89.7 116 41.4
SGA_v2.0_scaffold146G36213 Striga asiatica HOM05D001031 ORTHO05D000857 1.7e-16 89.7 120 45.0
Phvul.005G012300 Phaseolus vulgaris HOM05D001031 ORTHO05D000857 2.8e-16 89.0 126 44.4
VMungo1080G1895 Vigna mungo HOM05D001031 ORTHO05D000857 2.8e-16 89.0 130 44.6
MBI11_g11980_MAGBIO Magnolia biondii HOM05D001031 ORTHO05D000857 3.7e-16 88.6 133 42.1
Gorai.006G210700 Gossypium raimondii HOM05D001031 ORTHO05D000857 4.8e-16 88.2 124 41.9
Lsat_1_v5_gn_6_79001 Lactuca sativa HOM05D001031 ORTHO05D000857 4.8e-16 88.2 104 46.2
Gohir.D09G187900 Gossypium hirsutum HOM05D001031 ORTHO05D000857 1.1e-15 87.0 122 42.6
Solyc08g080070.1 Solanum lycopersicum HOM05D001031 ORTHO05D000857 1.4e-15 86.7 122 40.2
Sopen08g028420 Solanum pennellii HOM05D001031 ORTHO05D000857 1.4e-15 86.7 122 40.2
arahy.Tifrunner.gnm1.ann1.K5BFLR Arachis hypogaea HOM05D001031 ORTHO05D000857 1.8e-15 86.3 126 43.7
Lj3g0020372 Lotus japonicus HOM05D001031 ORTHO05D000857 1.8e-15 86.3 131 42.0
SGA_v2.0_scaffold196G40905 Striga asiatica HOM05D001031 ORTHO05D000857 1.8e-15 86.3 123 47.2
ECA240G4149 Erigeron canadensis HOM05D001031 ORTHO05D000857 3.1e-15 85.5 107 45.8
Psat0s1896g0080 Pisum sativum HOM05D001031 ORTHO05D000857 3.1e-15 85.5 126 42.9
arahy.Tifrunner.gnm1.ann1.4YMZ2P Arachis hypogaea HOM05D001031 ORTHO05D000857 4.1e-15 85.1 124 44.4
Nitab4.5_0001714g0040 Nicotiana tabacum HOM05D001031 ORTHO05D000857 4.1e-15 85.1 124 38.7
CSS0037662 Camellia sinensis var. sinensis HOM05D001031 ORTHO05D000857 6.9e-15 84.3 123 39.0
THA.LOC104806357 Tarenaya hassleriana HOM05D001031 ORTHO05D000857 6.9e-15 84.3 142 39.4
AT4G22900 Arabidopsis thaliana HOM05D001031 ORTHO05D000857 9.1e-15 84.0 144 38.9
Cpa.g.sc29.38 Carica papaya HOM05D001031 ORTHO05D000857 9.1e-15 84.0 106 48.1
Nitab4.5_0010547g0030 Nicotiana tabacum HOM05D000114 ORTHO05D000075 1.2e-14 83.6 122 38.5
COL.COLO4_23797 Corchorus olitorius HOM05D001031 ORTHO05D000857 1.5e-14 83.2 123 39.0
C07p52260 Brassica napus HOM05D001031 ORTHO05D000857 3.4e-14 82.0 137 43.8
BolC7t45720H Brassica oleracea HOM05D001031 ORTHO05D000857 3.4e-14 82.0 137 43.8
A03p53860 Brassica napus HOM05D001031 ORTHO05D000857 4.5e-14 81.6 137 44.5
BraA03t14455Z Brassica rapa HOM05D001031 ORTHO05D000857 4.5e-14 81.6 137 44.5
Thhalv10027461m.g Eutrema salsugineum HOM05D001031 ORTHO05D000857 4.5e-14 81.6 134 39.6
Manes.02G029800 Manihot esculenta HOM05D001031 ORTHO05D000857 4.5e-14 81.6 128 39.1
AL7G30620 Arabidopsis lyrata HOM05D001031 ORTHO05D000857 5.9e-14 81.3 138 37.0
BcaNung01662 Brassica carinata HOM05D001031 ORTHO05D000857 7.7e-14 80.9 137 43.1
BcaNung01663 Brassica carinata HOM05D001031 ORTHO05D000857 7.7e-14 80.9 137 43.1
Gorai.008G242300 Gossypium raimondii HOM05D001031 ORTHO05D000857 1.0e-13 80.5 124 39.5
THA.LOC104814149 Tarenaya hassleriana HOM05D001031 ORTHO05D000857 1.0e-13 80.5 132 40.9
Carub.0007s1838 Capsella rubella HOM05D001031 ORTHO05D000857 1.3e-13 80.1 138 39.1
Gohir.D12G226300 Gossypium hirsutum HOM05D001031 ORTHO05D000857 1.3e-13 80.1 124 39.5
Duzib084G0533 Durio zibethinus HOM05D001031 ORTHO05D000857 1.7e-13 79.7 121 39.7
Aa31LG6G4970 Aethionema arabicum HOM05D001031 ORTHO05D000857 2.9e-13 79.0 132 37.1
Carub.0006s3105 Capsella rubella HOM05D001031 ORTHO05D000857 2.9e-13 79.0 138 40.6
Thhalv10029314m.g Eutrema salsugineum HOM05D001031 ORTHO05D000857 5.0e-13 78.2 138 40.6
Gohir.A12G223700 Gossypium hirsutum HOM05D001031 ORTHO05D000857 5.0e-13 78.2 124 38.7
CiPaw.12G100700 Carya illinoinensis HOM05D001031 ORTHO05D000857 2.5e-12 75.9 103 43.7
CARHR229940 Cardamine hirsuta HOM05D001031 ORTHO05D000857 3.2e-12 75.5 137 36.5
Aa31LG9G10520 Aethionema arabicum HOM05D001031 ORTHO05D000857 4.2e-12 75.1 129 38.0
Sp7g20970 Schrenkiella parvula HOM05D001031 ORTHO05D000857 1.2e-11 73.6 70 64.3
Sc01g0008900 Simmondsia chinensis HOM05D001031 ORTHO05D000857 2.1e-11 72.8 102 44.1
Oeu021146.1 Olea europaea HOM05D001031 ORTHO05D000857 3.6e-11 72.0 102 39.2
AL6G46720 Arabidopsis lyrata HOM05D001031 ORTHO05D000857 4.7e-11 71.6 138 38.4
A09p13320 Brassica napus HOM05D001031 ORTHO05D000857 7.9e-11 70.9 140 38.6
BraA09t36981Z Brassica rapa HOM05D001031 ORTHO05D000857 7.9e-11 70.9 140 38.6
HanXRQChr03g0084101 Helianthus annuus HOM05D001031 ORTHO05D000857 7.9e-11 70.9 104 40.4
AL2G12640 Arabidopsis lyrata HOM05D001031 ORTHO05D000857 1.0e-10 70.5 139 38.1
THA.LOC104816648 Tarenaya hassleriana HOM05D001031 ORTHO05D000857 1.8e-10 69.7 116 36.2
AT1G62981 Arabidopsis thaliana HOM05D001031 ORTHO05D000857 3.9e-10 68.6 139 37.4
Duzib068G0422 Durio zibethinus HOM05D001031 ORTHO05D000857 5.1e-10 68.2 116 36.2
ATR1127G030 Amborella trichopoda HOM05D001031 ORTHO05D000857 6.7e-10 67.8 133 33.1
AL8G33770 Arabidopsis lyrata HOM05D001031 ORTHO05D000857 1.1e-09 67.0 133 39.1
Gohir.A10G152100 Gossypium hirsutum HOM05D001031 ORTHO05D000857 1.5e-09 66.6 130 34.6
Gohir.D10G114200 Gossypium hirsutum HOM05D001031 ORTHO05D000857 1.5e-09 66.6 130 34.6
Gorai.011G125900 Gossypium raimondii HOM05D001031 ORTHO05D000857 1.5e-09 66.6 130 34.6
Carub.0002s0202 Capsella rubella HOM05D001031 ORTHO05D000857 2.0e-09 66.2 139 36.7
Migut.E01181 Erythranthe guttata HOM05D001031 ORTHO05D000857 2.0e-09 66.2 115 39.1
Migut.E01182 Erythranthe guttata HOM05D001031 ORTHO05D000857 2.0e-09 66.2 115 39.1
MBI07_g11387_MAGBIO Magnolia biondii HOM05D001031 ORTHO05D000857 2.6e-09 65.9 129 34.1
HanXRQChr10g0286181 Helianthus annuus HOM05D001031 ORTHO05D000857 3.3e-09 65.5 126 34.9
PGR031G0037 Punica granatum HOM05D001031 ORTHO05D000857 3.3e-09 65.5 124 35.5
ATR1127G152 Amborella trichopoda HOM05D001031 ORTHO05D000857 4.4e-09 65.1 134 29.9
BolC4t24453H Brassica oleracea HOM05D001031 ORTHO05D000857 4.4e-09 65.1 140 37.9
HPP92_019760 Vanilla planifolia HOM05D001031 ORTHO05D000857 7.4e-09 64.3 137 28.5
TWI59G0335 Tripterygium wilfordii HOM05D001031 ORTHO05D000857 1.7e-08 63.2 124 30.6
AL1G18010 Arabidopsis lyrata HOM05D001031 ORTHO05D000857 2.2e-08 62.8 120 40.8
Solyc08g081850.1 Solanum lycopersicum HOM05D001031 ORTHO05D000857 2.2e-08 62.8 123 37.4
SalBow1G8355 Salvia bowleyana HOM05D001031 ORTHO05D000857 2.8e-08 62.4 44 72.7
Sopen08g030160 Solanum pennellii HOM05D001031 ORTHO05D000857 2.8e-08 62.4 123 36.6
CARHR254340 Cardamine hirsuta HOM05D001031 ORTHO05D000857 3.7e-08 62.0 142 34.5
HanXRQChr15g0464531 Helianthus annuus HOM05D001031 ORTHO05D000857 3.7e-08 62.0 140 33.6
Nitab4.5_0001203g0010 Nicotiana tabacum HOM05D001031 ORTHO05D000857 8.2e-08 60.8 144 31.9
Thhalv10023570m.g Eutrema salsugineum HOM05D001031 ORTHO05D000857 1.1e-07 60.5 142 36.6
SalBow6G5805 Salvia bowleyana HOM05D001031 ORTHO05D000857 1.1e-07 60.5 50 62.0
BcaC04g21179 Brassica carinata HOM05D001031 ORTHO05D000857 1.8e-07 59.7 123 36.6
BolC5t34571H Brassica oleracea HOM05D001031 ORTHO05D000857 1.8e-07 59.7 135 32.6
A05p40180 Brassica napus HOM05D001031 ORTHO05D000857 2.4e-07 59.3 136 32.4
FvH4_6g09410 Fragaria vesca HOM05D001031 ORTHO05D000857 2.4e-07 59.3 140 32.1
FAN14G3272 Fragaria x ananassa HOM05D001031 ORTHO05D000857 2.4e-07 59.3 140 32.1
HanXRQChr11g0353051 Helianthus annuus HOM05D001031 ORTHO05D000857 2.4e-07 59.3 131 31.3
TWI14G0124 Tripterygium wilfordii HOM05D001031 ORTHO05D000857 2.4e-07 59.3 126 31.7
FAN02G4181 Fragaria x ananassa HOM05D001031 ORTHO05D000857 3.1e-07 58.9 142 31.7
Sp6g05560 Schrenkiella parvula HOM05D001031 ORTHO05D000857 3.1e-07 58.9 137 35.8
AT4G11950 Arabidopsis thaliana HOM05D001031 ORTHO05D000857 4.1e-07 58.5 140 35.0
CAN.G532.59 Capsicum annuum HOM05D001031 ORTHO05D000857 4.1e-07 58.5 123 34.1
Sp3g07050 Schrenkiella parvula HOM05D001031 ORTHO05D000857 4.1e-07 58.5 136 32.4
TWI77G0634 Tripterygium wilfordii HOM05D001031 ORTHO05D000857 4.1e-07 58.5 131 31.3
Potri.006G111700 Populus trichocarpa HOM05D001031 ORTHO05D000857 5.3e-07 58.2 147 29.3
Sp2g01600 Schrenkiella parvula HOM05D001031 ORTHO05D000857 5.3e-07 58.2 144 32.6
BcaC04g21181 Brassica carinata HOM05D001031 ORTHO05D000857 9.1e-07 57.4 123 36.6
A09p27180 Brassica napus HOM05D001031 ORTHO05D000857 9.1e-07 57.4 123 36.6
C09p34500 Brassica napus HOM05D001031 ORTHO05D000857 9.1e-07 57.4 123 36.6
BolC9t56294H Brassica oleracea HOM05D001031 ORTHO05D000857 9.1e-07 57.4 123 36.6
BraA09t38286Z Brassica rapa HOM05D001031 ORTHO05D000857 9.1e-07 57.4 123 36.6
Potri.002G166900 Populus trichocarpa HOM05D001031 ORTHO05D000857 9.1e-07 57.4 123 31.7
BcaC06g31926 Brassica carinata HOM05D001031 ORTHO05D000857 1.2e-06 57.0 142 33.8
AL8G17770 Arabidopsis lyrata HOM05D013377 ORTHO05D015364 1.5e-06 56.6 61 59.0
C05p59260 Brassica napus HOM05D001031 ORTHO05D000857 1.5e-06 56.6 135 31.9
SEGI_31978 Sequoiadendron giganteum HOM05D001031 ORTHO05D000857 1.5e-06 56.6 150 28.7
TAR636G2615 Trochodendron aralioides HOM05D001031 ORTHO05D000857 1.5e-06 56.6 117 31.6
CsaV3_4G027400 Cucumis sativus L. HOM05D001031 ORTHO05D000857 3.4e-06 55.5 140 29.3
Duzib151G0836 Durio zibethinus HOM05D001031 ORTHO05D000857 3.4e-06 55.5 147 29.3
AT3G08600 Arabidopsis thaliana HOM05D001031 ORTHO05D000857 4.5e-06 55.1 137 32.1
Carub.0003s0773 Capsella rubella HOM05D001031 ORTHO05D000857 4.5e-06 55.1 138 31.2
RcHm_v2.0_Chr3g0459851 Rosa chinensis HOM05D001031 ORTHO05D000857 4.5e-06 55.1 141 29.1
BcaC02g10410 Brassica carinata HOM05D001031 ORTHO05D000857 5.9e-06 54.7 143 33.6
Aa31LG5G18670 Aethionema arabicum HOM05D001031 ORTHO05D000857 7.7e-06 54.3 141 29.1
BcaB04g18585 Brassica carinata HOM05D001031 ORTHO05D000857 7.7e-06 54.3 132 33.3
COL.COLO4_06344 Corchorus olitorius HOM05D001031 ORTHO05D000857 7.7e-06 54.3 123 30.1


User provided reference genes

Program Settings