Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 3.5e-118 428.3 217 100.0
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 4.6e-78 295.0 202 72.8
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 1.3e-77 293.5 202 73.3
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 1.3e-77 293.5 202 72.8
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 2.3e-77 292.7 187 75.9
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 4.3e-76 288.5 205 72.2
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 1.2e-75 287.0 199 72.9
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 1.4e-74 283.5 202 71.3
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 5.2e-74 281.6 186 73.7
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 6.8e-74 281.2 202 68.3
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 8.9e-74 280.8 202 72.3
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 2.6e-73 279.3 202 67.8
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 2.6e-73 279.3 185 74.6
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 2.6e-73 279.3 183 73.8
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 3.4e-73 278.9 187 72.2
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 3.4e-73 278.9 177 74.6
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 4.4e-73 278.5 187 72.2
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 4.4e-73 278.5 187 72.2
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 9.8e-73 277.3 205 67.8
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 2.2e-72 276.2 202 67.3
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 2.9e-72 275.8 205 67.3
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 3.7e-72 275.4 190 71.1
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 4.9e-72 275.0 202 69.8
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 8.3e-72 274.2 202 69.3
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 8.3e-72 274.2 187 74.3
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 8.3e-72 274.2 187 72.2
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 1.1e-71 273.9 187 73.8
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 1.1e-71 273.9 187 74.3
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 9.2e-71 270.8 186 71.0
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 4.6e-70 268.5 184 73.9
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.3e-69 266.9 199 69.3
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 2.3e-69 266.2 202 65.8
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 2.3e-69 266.2 187 69.0
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 8.6e-69 264.2 170 77.6
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 8.6e-69 264.2 187 67.4
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.1e-68 263.8 187 68.4
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 2.5e-68 262.7 185 69.7
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 4.3e-68 261.9 186 71.0
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 9.5e-68 260.8 187 66.3
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 9.5e-68 260.8 189 66.7
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 1.2e-67 260.4 198 67.7
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 1.2e-67 260.4 202 63.9
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.6e-67 260.0 191 67.5
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 2.1e-67 259.6 189 66.7
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 3.6e-67 258.8 189 66.1
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 4.7e-67 258.5 185 65.9
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 4.7e-67 258.5 185 65.9
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 4.7e-67 258.5 202 65.3
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 6.2e-67 258.1 187 65.8
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 6.2e-67 258.1 186 68.8
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 8.1e-67 257.7 186 68.8
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 1.1e-66 257.3 186 69.9
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 1.8e-66 256.5 190 68.9
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 2.3e-66 256.1 185 67.0
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 4.0e-66 255.4 186 66.7
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 5.2e-66 255.0 186 67.7
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 6.8e-66 254.6 189 65.1
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 8.9e-66 254.2 185 66.5
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 1.2e-65 253.8 186 64.5
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 2.0e-65 253.1 178 69.7
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 2.0e-65 253.1 186 66.1
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 2.6e-65 252.7 185 65.9
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 3.4e-65 252.3 185 65.4
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 3.4e-65 252.3 177 70.6
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 4.4e-65 251.9 186 65.6
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 4.4e-65 251.9 186 64.5
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 4.4e-65 251.9 186 64.5
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 7.6e-65 251.1 186 66.1
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 7.6e-65 251.1 186 64.0
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 7.6e-65 251.1 187 66.8
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 9.9e-65 250.8 186 64.0
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 1.7e-64 250.0 185 69.7
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 2.2e-64 249.6 202 60.9
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 3.8e-64 248.8 186 65.1
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 3.8e-64 248.8 186 65.1
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 4.9e-64 248.4 186 63.4
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 9.2e-63 244.2 192 64.6
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 1.2e-62 243.8 178 67.4
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 1.6e-62 243.4 181 69.1
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 2.7e-62 242.7 183 68.9
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 6.0e-62 241.5 202 62.4
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 7.8e-62 241.1 182 67.0
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 7.8e-62 241.1 183 64.5
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 3.9e-61 238.8 183 63.9
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 6.6e-61 238.0 182 61.5
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 8.6e-61 237.7 184 63.0
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 8.6e-61 237.7 203 62.6
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 2.5e-60 236.1 213 59.2
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 3.3e-60 235.7 205 60.5
DCAR_013483 Daucus carota HOM05D003667 ORTHO05D004397 5.6e-60 235.0 163 72.4
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 1.6e-59 233.4 202 59.9
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 3.1e-58 229.2 193 61.7
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 5.2e-58 228.4 200 60.0
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 5.2e-58 228.4 200 60.5
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 6.9e-58 228.0 185 64.3
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 1.2e-57 227.3 218 56.0
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 3.4e-57 225.7 168 65.5
BcaC02g11814 Brassica carinata HOM05D003667 ORTHO05D004397 4.4e-57 225.3 163 66.3
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 4.4e-57 225.3 187 63.1
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 5.8e-57 224.9 180 63.3
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 2.2e-56 223.0 183 62.3
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 2.2e-56 223.0 194 59.3
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 2.9e-56 222.6 181 63.5
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 4.9e-56 221.9 186 62.4
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 6.4e-56 221.5 180 63.3
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 3.2e-55 219.2 180 63.3
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 7.1e-55 218.0 180 63.3
Prupe.7G022400 Prunus persica HOM05D003667 ORTHO05D004397 1.0e-53 214.2 161 68.9
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 2.3e-53 213.0 184 56.0
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 3.0e-53 212.6 183 57.9
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 1.5e-52 210.3 180 60.6
CiPaw.04G007600 Carya illinoinensis HOM05D003667 ORTHO05D004397 2.5e-52 209.5 159 66.0
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 5.6e-52 208.4 186 58.1
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 2.1e-51 206.5 190 51.6
Rhsim02G0195900 Rhododendron simsii HOM05D003667 ORTHO05D004397 6.2e-51 204.9 141 73.0
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 2.6e-49 199.5 200 54.5
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 5.8e-49 198.4 179 53.1
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 8.4e-48 194.5 196 53.1
EL10Ac7g17477 Beta vulgaris HOM05D003667 ORTHO05D004397 1.4e-47 193.7 182 55.5
Sc01g0006150 Simmondsia chinensis HOM05D003667 ORTHO05D004397 1.4e-47 193.7 133 71.4
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 7.9e-46 188.0 182 53.3
Lj6g0022641 Lotus japonicus HOM05D003667 ORTHO05D004397 1.0e-45 187.6 154 63.6
Dinv05568 Davidia involucrata HOM05D003667 ORTHO05D004397 6.7e-45 184.9 132 71.2
MSTRG.10431 Avicennia marina HOM05D003667 ORTHO05D004397 1.5e-44 183.7 145 62.8
Ah.02g128310 Amaranthus hybridus HOM05D003667 ORTHO05D004397 5.3e-42 175.3 128 68.8
unitig_578.g16057 Utricularia gibba HOM05D003667 ORTHO05D004397 1.2e-41 174.1 145 59.3
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 3.4e-41 172.6 186 49.5
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 2.5e-36 156.4 105 68.6
BcaC02g10601 Brassica carinata HOM05D003667 ORTHO05D004397 1.6e-35 153.7 185 45.9
CSS0044789 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 2.1e-35 153.3 141 59.6
Oeu003870.1 Olea europaea HOM05D003667 ORTHO05D004397 1.4e-34 150.6 126 65.9
Cfa017699 Carpinus fangiana HOM05D003667 ORTHO05D004397 3.1e-34 149.4 113 65.5
Cre12.g554200 Chlamydomonas reinhardtii HOM05D003667 ORTHO05D004397 4.0e-34 149.1 205 43.4
Haze_20440 Corylus avellana HOM05D003667 ORTHO05D004397 6.9e-34 148.3 114 65.8
Solyc05g040100.4 Solanum lycopersicum HOM05D003667 ORTHO05D004397 3.4e-33 146.0 188 44.7
AagrBONN_evm.TU.Sc2ySwM_117.3822 Anthoceros agrestis HOM05D003667 ORTHO05D004397 1.0e-32 144.4 140 52.1
AagrBONN_evm.TU.Sc2ySwM_362.869 Anthoceros agrestis HOM05D003667 ORTHO05D004397 1.0e-32 144.4 140 52.1
CDE10G1036 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 8.4e-32 141.4 183 45.9
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 4.2e-31 139.0 181 45.3
Lalb_Chr10g0106501 Lupinus albus HOM05D003667 ORTHO05D004397 7.1e-31 138.3 113 62.8
Actinidia03933 Actinidia chinensis HOM05D003667 ORTHO05D004397 1.6e-30 137.1 145 52.4
PRCOL_00002098 Prasinoderma coloniale HOM05D003667 ORTHO05D004397 2.5e-28 129.8 194 40.2
MCO05G601 Micromonas commoda HOM05D003667 ORTHO05D004397 5.7e-28 128.6 186 37.6
AUR62033108 Chenopodium quinoa HOM05D003667 ORTHO05D004397 6.9e-26 121.7 90 72.2
Dinv25059 Davidia involucrata HOM05D003667 ORTHO05D004397 1.5e-25 120.6 83 72.3
CAN.G1036.8 Capsicum annuum HOM05D003667 ORTHO05D004397 1.4e-23 114.0 180 43.3
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 1.4e-23 114.0 187 40.1
AagrBONN_evm.TU.Sc2ySwM_368.3326 Anthoceros agrestis HOM05D003667 ORTHO05D004397 6.1e-22 108.6 159 42.1
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 1.8e-21 107.1 69 73.9
CBR_g20321 Chara braunii HOM05D003667 ORTHO05D004397 3.9e-21 105.9 94 51.1
QL07p048797 Quercus lobata HOM05D000002 ORTHO05D000001 1.6e-19 100.5 90 63.3
Ah.08g213160 Amaranthus hybridus HOM05D003667 ORTHO05D004397 5.3e-18 95.5 69 72.5
Glyma.02G282800 Glycine max HOM05D003667 ORTHO05D004397 5.3e-18 95.5 119 48.7
FAN16G1288 Fragaria x ananassa HOM05D003667 ORTHO05D004397 5.9e-17 92.0 58 70.7
BolC4t28047H Brassica oleracea HOM05D003667 ORTHO05D004397 1.0e-13 81.3 52 71.2
Actinidia37807 Actinidia chinensis HOM05D003667 ORTHO05D004397 1.8e-13 80.5 149 38.3
AUR62033107 Chenopodium quinoa HOM05D003667 ORTHO05D004397 5.1e-13 79.0 51 66.7
BraA04t18306Z Brassica rapa HOM05D003667 ORTHO05D004397 6.7e-13 78.6 49 71.4
A04p28220 Brassica napus HOM05D003667 ORTHO05D004397 8.8e-13 78.2 52 69.2
C04p65580 Brassica napus HOM05D003667 ORTHO05D004397 8.8e-13 78.2 52 69.2
arahy.Tifrunner.gnm1.ann1.X6I371 Arachis hypogaea HOM05D003667 ORTHO05D004397 1.1e-12 77.8 75 53.3
arahy.Tifrunner.gnm1.ann1.K13S6W Arachis hypogaea HOM05D004599 ORTHO05D005564 1.7e-11 73.9 99 45.5
Rhsim02G0194700 Rhododendron simsii HOM05D003667 ORTHO05D004397 6.3e-11 72.0 57 64.9
Rhsim02G0195800 Rhododendron simsii HOM05D003667 ORTHO05D004397 6.3e-11 72.0 57 64.9
TPR.G36075 Trifolium pratense HOM05D003667 ORTHO05D004397 1.4e-10 70.9 50 66.0
HanXRQChr04g0115761 Helianthus annuus HOM05D003667 ORTHO05D004397 1.2e-09 67.8 53 64.2
Nitab4.5_0002669g0010 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.5e-09 67.4 70 51.4
arahy.Tifrunner.gnm1.ann1.835HL2 Arachis hypogaea HOM05D004313 ORTHO05D004397 2.6e-09 66.6 49 59.2
COL.COLO4_28622 Corchorus olitorius HOM05D003667 ORTHO05D004397 4.5e-09 65.9 77 49.4
arahy.Tifrunner.gnm1.ann1.SJAT5A Arachis hypogaea HOM05D003667 ORTHO05D003672 5.0e-08 62.4 49 55.1
FvH4_3g32534 Fragaria vesca HOM05D003667 ORTHO05D004397 2.5e-07 60.1 77 48.1
C04p25660 Brassica napus HOM05D003667 ORTHO05D004397 3.2e-07 59.7 105 40.0
C05p50890 Brassica napus HOM05D003667 ORTHO05D004397 3.2e-07 59.7 105 40.0
Lalb_Chr10g0106511 Lupinus albus HOM05D003667 ORTHO05D004397 4.2e-07 59.3 46 63.0
CSS0038188 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 5.5e-07 58.9 31 80.6
BNapus_Darmor_BZH_scaffold_271p00010 Brassica napus HOM05D003667 ORTHO05D004397 9.4e-07 58.2 127 37.0
arahy.Tifrunner.gnm1.ann1.SS7A45 Arachis hypogaea HOM05D000726 ORTHO05D004397 1.2e-06 57.8 39 64.1
Ah.08g213170 Amaranthus hybridus HOM05D003667 ORTHO05D004397 2.7e-06 56.6 38 57.9


User provided reference genes

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