Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_027122 Vanilla planifolia HOM05D002253 ORTHO05D002351 1.4e-84 316.2 156 100.0
HPP92_021598 Vanilla planifolia HOM05D002253 ORTHO05D002351 4.4e-83 311.2 156 98.1
Nn3g17816 Nelumbo nucifera HOM05D002253 ORTHO05D002351 5.7e-14 81.6 160 42.5
HPP92_000151 Vanilla planifolia HOM05D002253 ORTHO05D002351 2.8e-13 79.3 148 40.5
Dinv28089 Davidia involucrata HOM05D002253 ORTHO05D002351 1.6e-11 73.6 139 43.2
Nn4g23814 Nelumbo nucifera HOM05D002253 ORTHO05D002351 4.5e-11 72.0 141 41.1
Dinv09805 Davidia involucrata HOM05D002253 ORTHO05D002351 5.9e-11 71.6 147 38.8
Actinidia16646 Actinidia chinensis HOM05D002253 ORTHO05D002351 6.5e-10 68.2 126 38.9
PSO017G1795 Papaver somniferum HOM05D002253 ORTHO05D002351 6.5e-10 68.2 140 36.4
TPR.G26279 Trifolium pratense HOM05D002253 ORTHO05D002351 6.5e-10 68.2 152 36.2
PSO017G4876 Papaver somniferum HOM05D002253 ORTHO05D002351 8.5e-10 67.8 141 36.2
Cfa018604 Carpinus fangiana HOM05D002253 ORTHO05D002351 1.1e-09 67.4 122 39.3
Eucgr.K02217 Eucalyptus grandis HOM05D002253 ORTHO05D002351 1.1e-09 67.4 93 51.6
Ca_11178_v3 Cicer arietinum L. HOM05D002253 ORTHO05D002351 1.5e-09 67.0 135 39.3
Os01g0131300 Oryza sativa ssp. japonica HOM05D002253 ORTHO05D002351 1.5e-09 67.0 110 44.5
PSO478G2314 Papaver somniferum HOM05D002253 ORTHO05D002351 1.5e-09 67.0 141 36.9
HPP92_027373 Vanilla planifolia HOM05D002253 ORTHO05D002351 1.5e-09 67.0 124 44.4
Haze_17470 Corylus avellana HOM05D002253 ORTHO05D002351 1.9e-09 66.6 122 38.5
MBI10_g16026_MAGBIO Magnolia biondii HOM05D002253 ORTHO05D002351 1.9e-09 66.6 146 41.8
Glyma.20G114800 Glycine max HOM05D002253 ORTHO05D002351 2.5e-09 66.2 147 35.4
Glyma.10G275000 Glycine max HOM05D002253 ORTHO05D002351 3.2e-09 65.9 147 36.1
Phvul.007G026700 Phaseolus vulgaris HOM05D002253 ORTHO05D002351 5.5e-09 65.1 130 37.7
MD14G1226200 Malus domestica HOM05D002253 ORTHO05D002351 7.2e-09 64.7 137 40.9
Peaxi162Scf00015g00812 Petunia axillaris HOM05D002253 ORTHO05D002351 7.2e-09 64.7 114 42.1
TAR374G0921 Trochodendron aralioides HOM05D002253 ORTHO05D002351 1.2e-08 63.9 131 42.0
CSS0039080 Camellia sinensis var. sinensis HOM05D002253 ORTHO05D002351 1.6e-08 63.5 162 37.0
Ciclev10022179m.g Citrus clementina HOM05D002253 ORTHO05D002351 2.1e-08 63.2 91 47.3
Manes.06G069300 Manihot esculenta HOM05D002253 ORTHO05D002351 2.1e-08 63.2 136 41.2
Peaxi162Scf00382g00023 Petunia axillaris HOM05D002253 ORTHO05D002351 2.1e-08 63.2 106 39.6
TAR371G1148 Trochodendron aralioides HOM05D002253 ORTHO05D002351 2.1e-08 63.2 133 39.8
Actinidia14884 Actinidia chinensis HOM05D002253 ORTHO05D002351 2.7e-08 62.8 146 34.2
Carub.0001s1308 Capsella rubella HOM05D002253 ORTHO05D002351 2.7e-08 62.8 144 37.5
COL.COLO4_07913 Corchorus olitorius HOM05D002253 ORTHO05D002351 2.7e-08 62.8 139 35.3
FAN12G2183 Fragaria x ananassa HOM05D002253 ORTHO05D002351 2.7e-08 62.8 141 38.3
CsaV3_6G003450 Cucumis sativus L. HOM05D002253 ORTHO05D002351 3.6e-08 62.4 158 38.6
FvH4_5g12280 Fragaria vesca HOM05D002253 ORTHO05D002351 3.6e-08 62.4 89 43.8
FAN12G1145 Fragaria x ananassa HOM05D002253 ORTHO05D002351 3.6e-08 62.4 141 38.3
FAN18G0057 Fragaria x ananassa HOM05D002253 ORTHO05D002351 3.6e-08 62.4 89 43.8
FAN18G1637 Fragaria x ananassa HOM05D002253 ORTHO05D002351 3.6e-08 62.4 89 43.8
Peaxi162Scf00086g00101 Petunia axillaris HOM05D002253 ORTHO05D002351 3.6e-08 62.4 89 42.7
PGR044G1243 Punica granatum HOM05D002253 ORTHO05D002351 3.6e-08 62.4 128 41.4
FvH4_4g27540 Fragaria vesca HOM05D002253 ORTHO05D002351 4.7e-08 62.0 141 38.3
PGSC0003DMG400012967 Solanum tuberosum HOM05D002253 ORTHO05D002351 4.7e-08 62.0 121 39.7
TAR622G0007 Trochodendron aralioides HOM05D002253 ORTHO05D002351 4.7e-08 62.0 138 41.3
VMungo0720G1033 Vigna mungo HOM05D002253 ORTHO05D002351 4.7e-08 62.0 130 37.7
QL01p043511 Quercus lobata HOM05D002253 ORTHO05D002351 6.1e-08 61.6 137 37.2
ClCG05G022790 Citrullus lanatus HOM05D002253 ORTHO05D002351 8.0e-08 61.2 153 34.0
ClCG08G005250 Citrullus lanatus HOM05D002253 ORTHO05D002351 8.0e-08 61.2 138 38.4
Zm00001eb335140 Zea mays HOM05D002253 ORTHO05D002351 8.0e-08 61.2 138 38.4
Cfa019788 Carpinus fangiana HOM05D002253 ORTHO05D002351 1.0e-07 60.8 149 35.6
CiPaw.16G064200 Carya illinoinensis HOM05D002253 ORTHO05D002351 1.0e-07 60.8 129 39.5
FAN08G0576 Fragaria x ananassa HOM05D002253 ORTHO05D002351 1.0e-07 60.8 89 43.8
Manes.14G101400 Manihot esculenta HOM05D002253 ORTHO05D002351 1.0e-07 60.8 132 40.9
Atru.chr9.822 Acer truncatum HOM05D002253 ORTHO05D002351 1.4e-07 60.5 178 33.1
Nitab4.5_0017241g0010 Nicotiana tabacum HOM05D002253 ORTHO05D002351 1.4e-07 60.5 120 42.5
Thecc.02G356300 Theobroma cacao HOM05D002253 ORTHO05D002351 1.4e-07 60.5 129 38.0
TAR629G0720 Trochodendron aralioides HOM05D002253 ORTHO05D002351 1.4e-07 60.5 123 42.3
Ciclev10032842m.g Citrus clementina HOM05D002253 ORTHO05D002351 1.8e-07 60.1 131 36.6
MELO3C011565.2 Cucumis melo HOM05D002253 ORTHO05D002351 1.8e-07 60.1 137 40.1
Rhsim09G0108900 Rhododendron simsii HOM05D002253 ORTHO05D002351 1.8e-07 60.1 133 33.8
Solyc05g009520.2 Solanum lycopersicum HOM05D002253 ORTHO05D002351 1.8e-07 60.1 84 41.7
CDE06G2819 Ceratophyllum demersum HOM05D002253 ORTHO05D002351 2.3e-07 59.7 128 35.9
MELO3C012239.2 Cucumis melo HOM05D002253 ORTHO05D002351 2.3e-07 59.7 151 33.1
CsaV3_5G034240 Cucumis sativus L. HOM05D002253 ORTHO05D002351 2.3e-07 59.7 150 32.7
Manes.05G137800 Manihot esculenta HOM05D002253 ORTHO05D002351 2.3e-07 59.7 83 44.6
Duzib248G1226 Durio zibethinus HOM05D002253 ORTHO05D002351 3.0e-07 59.3 139 37.4
Gohir.A12G167500 Gossypium hirsutum HOM05D002253 ORTHO05D002351 3.0e-07 59.3 136 33.8
Nitab4.5_0010492g0010 Nicotiana tabacum HOM05D002253 ORTHO05D002351 3.0e-07 59.3 120 42.5
RcHm_v2.0_Chr7g0185281 Rosa chinensis HOM05D002253 ORTHO05D002351 3.0e-07 59.3 107 42.1
Sp1g11860 Schrenkiella parvula HOM05D002253 ORTHO05D002351 3.0e-07 59.3 144 36.1
PGSC0003DMG400005716 Solanum tuberosum HOM05D002253 ORTHO05D002351 3.0e-07 59.3 118 39.8
CiPaw.15G084000 Carya illinoinensis HOM05D002253 ORTHO05D002351 4.0e-07 58.9 135 40.0
FAN22G1215 Fragaria x ananassa HOM05D002253 ORTHO05D002351 4.0e-07 58.9 142 35.2
Gohir.A11G005700 Gossypium hirsutum HOM05D002253 ORTHO05D002351 4.0e-07 58.9 130 40.8
Lsat_1_v5_gn_3_59460 Lactuca sativa HOM05D002253 ORTHO05D002351 4.0e-07 58.9 103 39.8
MD06G1215300 Malus domestica HOM05D002253 ORTHO05D002351 4.0e-07 58.9 122 39.3
Nitab4.5_0007985g0040 Nicotiana tabacum HOM05D002253 ORTHO05D002351 4.0e-07 58.9 118 38.1
RcHm_v2.0_Chr4g0435381 Rosa chinensis HOM05D002253 ORTHO05D002351 4.0e-07 58.9 143 37.1
Sed0004753 Sechium edule HOM05D002253 ORTHO05D002351 4.0e-07 58.9 151 34.4
Haze_18660 Corylus avellana HOM05D002253 ORTHO05D002351 5.2e-07 58.5 144 34.7
FAN13G2702 Fragaria x ananassa HOM05D002253 ORTHO05D002351 5.2e-07 58.5 88 45.5
Oeu009782.1 Olea europaea HOM05D002253 ORTHO05D002351 5.2e-07 58.5 147 35.4
Potri.010G126000 Populus trichocarpa HOM05D002253 ORTHO05D002351 5.2e-07 58.5 136 41.2
Sopen03g038440 Solanum pennellii HOM05D002253 ORTHO05D002351 5.2e-07 58.5 120 39.2
Sopen05g005330 Solanum pennellii HOM05D002253 ORTHO05D002351 5.2e-07 58.5 113 37.2
Zm00001eb125340 Zea mays HOM05D002253 ORTHO05D002351 5.2e-07 58.5 137 36.5
TWI75G0443 Tripterygium wilfordii HOM05D002253 ORTHO05D002351 6.7e-07 58.2 124 38.7
Actinidia38380 Actinidia chinensis HOM05D002253 ORTHO05D002351 8.8e-07 57.8 145 33.1
A08p32340 Brassica napus HOM05D002253 ORTHO05D002351 8.8e-07 57.8 141 36.2
BraA08t35157Z Brassica rapa HOM05D002253 ORTHO05D002351 8.8e-07 57.8 141 36.2
Carub.0005s0370 Capsella rubella HOM05D002253 ORTHO05D002351 8.8e-07 57.8 98 41.8
Duzib084G0173 Durio zibethinus HOM05D002253 ORTHO05D002351 8.8e-07 57.8 117 39.3
Medtr1g111060 Medicago truncatula HOM05D002253 ORTHO05D002351 8.8e-07 57.8 125 37.6
Potri.008G119800 Populus trichocarpa HOM05D002253 ORTHO05D002351 8.8e-07 57.8 140 37.9
Sabra08G0090800 Salix brachista HOM05D002253 ORTHO05D002351 8.8e-07 57.8 144 37.5
Solyc03g119610.1 Solanum lycopersicum HOM05D002253 ORTHO05D002351 8.8e-07 57.8 118 39.0
PGSC0003DMG400028789 Solanum tuberosum HOM05D002253 ORTHO05D002351 8.8e-07 57.8 115 40.0
TWI31G0181 Tripterygium wilfordii HOM05D002253 ORTHO05D002351 8.8e-07 57.8 122 38.5
Duzib251G0566 Durio zibethinus HOM05D002253 ORTHO05D002351 1.2e-06 57.4 142 37.3
Hma1.2p1_1001F.1_g246520 Hydrangea macrophylla HOM05D002253 ORTHO05D002351 1.2e-06 57.4 159 35.2
Lalb_Chr02g0146041 Lupinus albus HOM05D002253 ORTHO05D002351 1.2e-06 57.4 137 35.0
Nitab4.5_0001194g0010 Nicotiana tabacum HOM05D002253 ORTHO05D002351 1.2e-06 57.4 126 35.7
Sed0015458 Sechium edule HOM05D002253 ORTHO05D002351 1.2e-06 57.4 118 37.3
Sed0022428 Sechium edule HOM05D002253 ORTHO05D002351 1.2e-06 57.4 137 32.1
Cpa.g.sc448.1 Carica papaya HOM05D002253 ORTHO05D002351 1.5e-06 57.0 137 40.9
FAN04G1468 Fragaria x ananassa HOM05D002253 ORTHO05D002351 1.5e-06 57.0 88 44.3
FAN07G2061 Fragaria x ananassa HOM05D002253 ORTHO05D002351 2.0e-06 56.6 138 36.2
Gohir.D11G004801 Gossypium hirsutum HOM05D002253 ORTHO05D002351 2.0e-06 56.6 179 35.2
Gohir.D12G171100 Gossypium hirsutum HOM05D002253 ORTHO05D002351 2.0e-06 56.6 136 32.4
Gorai.008G183700 Gossypium raimondii HOM05D002253 ORTHO05D002351 2.0e-06 56.6 136 32.4
Lj2g0015775 Lotus japonicus HOM05D002253 ORTHO05D002351 2.0e-06 56.6 126 41.3
Manes.01G012400 Manihot esculenta HOM05D002253 ORTHO05D002351 2.0e-06 56.6 116 40.5
Atru.chr11.1281 Acer truncatum HOM05D002253 ORTHO05D002351 2.6e-06 56.2 137 33.6
Lj5g0006025 Lotus japonicus HOM05D002253 ORTHO05D002351 2.6e-06 56.2 134 38.1
Oeu014307.1 Olea europaea HOM05D002253 ORTHO05D002351 2.6e-06 56.2 114 38.6
Solyc06g069150.1 Solanum lycopersicum HOM05D002253 ORTHO05D002351 2.6e-06 56.2 150 36.7
TWI79G0250 Tripterygium wilfordii HOM05D002253 ORTHO05D002351 2.6e-06 56.2 135 36.3
BcaC07g38689 Brassica carinata HOM05D002253 ORTHO05D002351 3.3e-06 55.8 142 34.5
C08p16090 Brassica napus HOM05D002253 ORTHO05D002351 3.3e-06 55.8 142 34.5
BolC8t49232H Brassica oleracea HOM05D002253 ORTHO05D002351 3.3e-06 55.8 142 34.5
CAN.G438.133 Capsicum annuum HOM05D002253 ORTHO05D002351 3.3e-06 55.8 120 40.0
CARHR013740 Cardamine hirsuta HOM05D002253 ORTHO05D002351 3.3e-06 55.8 124 36.3
Thhalv10008809m.g Eutrema salsugineum HOM05D002253 ORTHO05D002351 3.3e-06 55.8 144 34.7
Gorai.007G006000 Gossypium raimondii HOM05D002253 ORTHO05D002351 3.3e-06 55.8 179 35.2
Lj4g0014578 Lotus japonicus HOM05D002253 ORTHO05D002351 3.3e-06 55.8 121 38.8
MD16G1043800 Malus domestica HOM05D002253 ORTHO05D002351 3.3e-06 55.8 147 34.0
Phvul.002G315700 Phaseolus vulgaris HOM05D002253 ORTHO05D002351 3.3e-06 55.8 122 36.1
Sopen04g002220 Solanum pennellii HOM05D002253 ORTHO05D002351 3.3e-06 55.8 101 39.6
THA.LOC104825702 Tarenaya hassleriana HOM05D002253 ORTHO05D002351 3.3e-06 55.8 143 36.4
CAN.G423.8 Capsicum annuum HOM05D002253 ORTHO05D002351 4.4e-06 55.5 95 38.9
CDE07G1096 Ceratophyllum demersum HOM05D002253 ORTHO05D002351 4.4e-06 55.5 128 35.2
Duzib205G1666 Durio zibethinus HOM05D002253 ORTHO05D002351 4.4e-06 55.5 116 38.8
ECA233G6013 Erigeron canadensis HOM05D002253 ORTHO05D002351 4.4e-06 55.5 137 34.3
MBI16_g16414_MAGBIO Magnolia biondii HOM05D002253 ORTHO05D002351 4.4e-06 55.5 79 43.0
PGR083G0350 Punica granatum HOM05D002253 ORTHO05D002351 4.4e-06 55.5 124 38.7
SalBow8G3108 Salvia bowleyana HOM05D002253 ORTHO05D002351 4.4e-06 55.5 152 35.5
SalBow8G4143 Salvia bowleyana HOM05D002253 ORTHO05D002351 4.4e-06 55.5 152 35.5
BcaB03g13144 Brassica carinata HOM05D002253 ORTHO05D002351 5.7e-06 55.1 140 34.3
Nitab4.5_0000057g0330 Nicotiana tabacum HOM05D002253 ORTHO05D002351 5.7e-06 55.1 103 39.8
THA.LOC104822177 Tarenaya hassleriana HOM05D002253 ORTHO05D002351 5.7e-06 55.1 157 29.9
Aqoxy3G00318 Aquilegia oxysepala HOM05D002253 ORTHO05D002351 7.5e-06 54.7 141 37.6
Nitab4.5_0003189g0020 Nicotiana tabacum HOM05D002253 ORTHO05D002351 7.5e-06 54.7 123 39.0
COL.COLO4_04673 Corchorus olitorius HOM05D002253 ORTHO05D002351 9.7e-06 54.3 114 39.5
Psat6g228840 Pisum sativum HOM05D002253 ORTHO05D002351 9.7e-06 54.3 156 34.0
Sc04g0006530 Simmondsia chinensis HOM05D002253 ORTHO05D002351 9.7e-06 54.3 91 42.9


User provided reference genes

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