Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_027107 Vanilla planifolia HOM05D002893 ORTHO05D003387 5.5e-50 200.7 102 100.0
Lj6A823T55 Lonicera japonica HOM05D002893 ORTHO05D003387 6.0e-12 74.3 72 52.8
Potri.010G057300 Populus trichocarpa HOM05D002893 ORTHO05D003387 3.9e-11 71.6 72 52.8
CiPaw.04G034800 Carya illinoinensis HOM05D002893 ORTHO05D003387 8.6e-11 70.5 72 48.6
Nn4g22385 Nelumbo nucifera HOM05D002893 ORTHO05D003387 8.6e-11 70.5 71 53.5
Prupe.3G302900 Prunus persica HOM05D002893 ORTHO05D003387 8.6e-11 70.5 72 52.8
GSVIVG01001817001 Vitis vinifera HOM05D002893 ORTHO05D003387 8.6e-11 70.5 72 54.2
Actinidia09670 Actinidia chinensis HOM05D002893 ORTHO05D003387 1.1e-10 70.1 71 52.1
Cfa007252 Carpinus fangiana HOM05D002893 ORTHO05D003387 1.1e-10 70.1 72 52.8
Haze_14840 Corylus avellana HOM05D002893 ORTHO05D003387 1.1e-10 70.1 72 52.8
Cpa.g.sc171.35 Carica papaya HOM05D002893 ORTHO05D003387 1.5e-10 69.7 72 52.8
MSTRG.3091 Avicennia marina HOM05D002893 ORTHO05D003387 1.9e-10 69.3 72 51.4
Dinv10981 Davidia involucrata HOM05D002893 ORTHO05D003387 2.5e-10 68.9 71 52.1
Dinv33360 Davidia involucrata HOM05D002893 ORTHO05D003387 2.5e-10 68.9 72 52.8
vmacro05938 Vaccinium macrocarpon HOM05D002893 ORTHO05D003387 2.5e-10 68.9 72 52.8
ClCG11G006960 Citrullus lanatus HOM05D002893 ORTHO05D003387 3.3e-10 68.6 71 50.7
MBI11_g06761_MAGBIO Magnolia biondii HOM05D002893 ORTHO05D003387 3.3e-10 68.6 71 52.1
Manes.13G016900 Manihot esculenta HOM05D002893 ORTHO05D003387 3.3e-10 68.6 71 47.9
QL02p071998 Quercus lobata HOM05D002893 ORTHO05D003387 3.3e-10 68.6 72 52.8
Lju41A50T55 Lonicera japonica HOM05D002893 ORTHO05D003387 4.3e-10 68.2 71 53.5
CiPaw.03G052900 Carya illinoinensis HOM05D002893 ORTHO05D003387 5.6e-10 67.8 72 50.0
Migut.H00011 Erythranthe guttata HOM05D002893 ORTHO05D003387 5.6e-10 67.8 72 52.8
Atru.chr11.2283 Acer truncatum HOM05D002893 ORTHO05D003387 7.3e-10 67.4 71 50.7
COL.COLO4_08759 Corchorus olitorius HOM05D002893 ORTHO05D003387 7.3e-10 67.4 72 52.8
Nitab4.5_0009757g0010 Nicotiana tabacum HOM05D002893 ORTHO05D003387 7.3e-10 67.4 73 53.4
TAR629G0823 Trochodendron aralioides HOM05D002893 ORTHO05D003387 7.3e-10 67.4 71 50.7
TAR374G1033 Trochodendron aralioides HOM05D002893 ORTHO05D003387 9.5e-10 67.0 71 52.1
BcaB08g36968 Brassica carinata HOM05D002893 ORTHO05D003387 1.2e-09 66.6 73 46.6
CAN.G473.80 Capsicum annuum HOM05D002893 ORTHO05D003387 1.2e-09 66.6 73 53.4
MELO3C008209.2 Cucumis melo HOM05D002893 ORTHO05D003387 1.2e-09 66.6 71 49.3
CsaV3_6G001110 Cucumis sativus L. HOM05D002893 ORTHO05D003387 1.6e-09 66.2 71 50.7
Gohir.D09G035300 Gossypium hirsutum HOM05D002893 ORTHO05D003387 1.6e-09 66.2 72 51.4
Thhalv10012767m.g Eutrema salsugineum HOM05D002893 ORTHO05D003387 2.1e-09 65.9 74 45.9
Gohir.A09G034400 Gossypium hirsutum HOM05D002893 ORTHO05D003387 2.1e-09 65.9 72 50.0
MD09G1014800 Malus domestica HOM05D002893 ORTHO05D003387 2.1e-09 65.9 72 51.4
Manes.17G105600 Manihot esculenta HOM05D002893 ORTHO05D003387 2.1e-09 65.9 72 51.4
Potri.001G333600 Populus trichocarpa HOM05D002893 ORTHO05D003387 2.1e-09 65.9 66 48.5
Thecc.04G030500 Theobroma cacao HOM05D002893 ORTHO05D003387 2.1e-09 65.9 72 51.4
TAR622G0433 Trochodendron aralioides HOM05D002893 ORTHO05D003387 2.1e-09 65.9 71 50.7
GSVIVG01010363001 Vitis vinifera HOM05D002893 ORTHO05D003387 2.1e-09 65.9 71 49.3
CSS0024252 Camellia sinensis var. sinensis HOM05D002893 ORTHO05D003387 2.8e-09 65.5 72 48.6
CSS0027251 Camellia sinensis var. sinensis HOM05D002893 ORTHO05D003387 2.8e-09 65.5 72 48.6
Ciclev10030770m.g Citrus clementina HOM05D002893 ORTHO05D003387 2.8e-09 65.5 72 51.4
Gohir.D04G078800 Gossypium hirsutum HOM05D002893 ORTHO05D003387 2.8e-09 65.5 71 50.7
Nitab4.5_0002887g0120 Nicotiana tabacum HOM05D002893 ORTHO05D003387 2.8e-09 65.5 73 50.7
FvH4_6g53080 Fragaria vesca HOM05D002893 ORTHO05D003387 3.6e-09 65.1 72 48.6
FAN09G3500 Fragaria x ananassa HOM05D002893 ORTHO05D003387 3.6e-09 65.1 72 48.6
FAN14G0374 Fragaria x ananassa HOM05D002893 ORTHO05D003387 3.6e-09 65.1 72 48.6
Glyma.16G060400 Glycine max HOM05D002893 ORTHO05D003387 3.6e-09 65.1 72 50.0
Gorai.006G040200 Gossypium raimondii HOM05D002893 ORTHO05D003387 3.6e-09 65.1 72 50.0
MD13G1115300 Malus domestica HOM05D002893 ORTHO05D003387 3.6e-09 65.1 72 48.6
RcHm_v2.0_Chr2g0174861 Rosa chinensis HOM05D002893 ORTHO05D003387 3.6e-09 65.1 72 48.6
Atru.chr6.2519 Acer truncatum HOM05D002893 ORTHO05D003387 4.7e-09 64.7 72 50.0
Aqoxy5G03468 Aquilegia oxysepala HOM05D002893 ORTHO05D003387 4.7e-09 64.7 71 49.3
Cfa009344 Carpinus fangiana HOM05D002893 ORTHO05D003387 4.7e-09 64.7 67 49.3
Duzib187G1811 Durio zibethinus HOM05D002893 ORTHO05D003387 4.7e-09 64.7 72 50.0
Duzib264G0096 Durio zibethinus HOM05D002893 ORTHO05D003387 4.7e-09 64.7 72 50.0
Phvul.001G096200 Phaseolus vulgaris HOM05D002893 ORTHO05D003387 4.7e-09 64.7 71 49.3
Sed0012732 Sechium edule HOM05D002893 ORTHO05D003387 4.7e-09 64.7 73 49.3
TAR371G0635 Trochodendron aralioides HOM05D002893 ORTHO05D003387 4.7e-09 64.7 71 50.7
CSS0023379 Camellia sinensis var. sinensis HOM05D002893 ORTHO05D003387 6.2e-09 64.3 72 48.6
CSS0025114 Camellia sinensis var. sinensis HOM05D002893 ORTHO05D003387 6.2e-09 64.3 71 49.3
CSS0036153 Camellia sinensis var. sinensis HOM05D002893 ORTHO05D003387 6.2e-09 64.3 72 48.6
Duzib147G0805 Durio zibethinus HOM05D002893 ORTHO05D003387 6.2e-09 64.3 72 50.0
FAN14G5777 Fragaria x ananassa HOM05D002893 ORTHO05D003387 6.2e-09 64.3 75 46.7
MD17G1014900 Malus domestica HOM05D002893 ORTHO05D003387 6.2e-09 64.3 71 47.9
Sc03g0006770 Simmondsia chinensis HOM05D002893 ORTHO05D003387 6.2e-09 64.3 69 52.2
Actinidia38213 Actinidia chinensis HOM05D002893 ORTHO05D003387 8.0e-09 63.9 72 50.0
EL10Ac6g13460 Beta vulgaris HOM05D002893 ORTHO05D003387 8.0e-09 63.9 71 49.3
FAN02G1523 Fragaria x ananassa HOM05D002893 ORTHO05D003387 8.0e-09 63.9 72 48.6
COL.COLO4_12822 Corchorus olitorius HOM05D002893 ORTHO05D003387 1.1e-08 63.5 72 47.2
DCAR_007012 Daucus carota HOM05D002893 ORTHO05D003387 1.1e-08 63.5 71 47.9
Gorai.012G088700 Gossypium raimondii HOM05D002893 ORTHO05D003387 1.1e-08 63.5 72 48.6
Sopen02g038600 Solanum pennellii HOM05D002893 ORTHO05D003387 1.1e-08 63.5 73 53.4
CARHR199110 Cardamine hirsuta HOM05D002893 ORTHO05D003387 1.4e-08 63.2 74 44.6
Dinv25674 Davidia involucrata HOM05D002893 ORTHO05D003387 1.4e-08 63.2 70 52.9
Sabra16G0214900 Salix brachista HOM05D002893 ORTHO05D003387 1.8e-08 62.8 66 48.5
Gohir.A05G340400 Gossypium hirsutum HOM05D002893 ORTHO05D003387 2.3e-08 62.4 71 47.9
PSO063G5911 Papaver somniferum HOM05D002893 ORTHO05D003387 2.3e-08 62.4 71 49.3
PSO782G1898 Papaver somniferum HOM05D002893 ORTHO05D003387 2.3e-08 62.4 71 49.3
PGR142G1592 Punica granatum HOM05D002893 ORTHO05D003387 2.3e-08 62.4 73 50.7
Rhsim10G0008700 Rhododendron simsii HOM05D002893 ORTHO05D003387 2.3e-08 62.4 72 51.4
Sp6g29800 Schrenkiella parvula HOM05D002893 ORTHO05D003387 2.3e-08 62.4 74 44.6
Solyc02g093950.3 Solanum lycopersicum HOM05D002893 ORTHO05D003387 2.3e-08 62.4 73 52.1
TWI75G1758 Tripterygium wilfordii HOM05D002893 ORTHO05D003387 2.3e-08 62.4 71 46.5
Ciclev10014385m.g Citrus clementina HOM05D002893 ORTHO05D003387 3.1e-08 62.0 72 48.6
Duzib251G0408 Durio zibethinus HOM05D002893 ORTHO05D003387 3.1e-08 62.0 71 47.9
Gohir.D01G148500 Gossypium hirsutum HOM05D002893 ORTHO05D003387 3.1e-08 62.0 71 47.9
Gorai.002G184300 Gossypium raimondii HOM05D002893 ORTHO05D003387 3.1e-08 62.0 71 47.9
SGA_v2.0_scaffold18G08220 Striga asiatica HOM05D002893 ORTHO05D003387 3.1e-08 62.0 72 51.4
Ah.03g133950 Amaranthus hybridus HOM05D002893 ORTHO05D003387 4.0e-08 61.6 72 47.2
ECA233G0407 Erigeron canadensis HOM05D002893 ORTHO05D003387 4.0e-08 61.6 73 49.3
Gohir.A01G161000 Gossypium hirsutum HOM05D002893 ORTHO05D003387 4.0e-08 61.6 71 47.9
Gorai.002G193200 Gossypium raimondii HOM05D002893 ORTHO05D003387 4.0e-08 61.6 71 47.9
CSS0016438 Camellia sinensis var. sinensis HOM05D002893 ORTHO05D003387 5.2e-08 61.2 72 51.4
Hund10840 Selenicereus undatus HOM05D002893 ORTHO05D003387 5.2e-08 61.2 72 47.2
AUR62005585 Chenopodium quinoa HOM05D002893 ORTHO05D003387 8.9e-08 60.5 71 45.1
AUR62024145 Chenopodium quinoa HOM05D002893 ORTHO05D003387 8.9e-08 60.5 71 45.1
arahy.Tifrunner.gnm1.ann1.S4Z9Q7 Arachis hypogaea HOM05D002893 ORTHO05D003387 1.2e-07 60.1 72 47.2
CANSAT64G1237 Cannabis sativa HOM05D002893 ORTHO05D003387 1.2e-07 60.1 72 48.6
Glyma.19G086700 Glycine max HOM05D002893 ORTHO05D003387 1.2e-07 60.1 72 47.2
Hma1.2p1_1954F.1_g308870 Hydrangea macrophylla HOM05D002893 ORTHO05D003387 1.2e-07 60.1 72 48.6
Peaxi162Scf00420g00443 Petunia axillaris HOM05D002893 ORTHO05D003387 1.2e-07 60.1 71 47.9
Thecc.02G275700 Theobroma cacao HOM05D002893 ORTHO05D003387 1.2e-07 60.1 71 43.7
BcaB01g05300 Brassica carinata HOM05D002893 ORTHO05D003387 1.5e-07 59.7 74 41.9
C03p07490 Brassica napus HOM05D002893 ORTHO05D003387 1.5e-07 59.7 74 41.9
BolC3t13250H Brassica oleracea HOM05D002893 ORTHO05D003387 1.5e-07 59.7 74 41.9
Haze_12378 Corylus avellana HOM05D002893 ORTHO05D003387 1.5e-07 59.7 67 46.3
Lalb_Chr14g0363081 Lupinus albus HOM05D002893 ORTHO05D003387 1.5e-07 59.7 72 44.4
Manes.15G158400 Manihot esculenta HOM05D002893 ORTHO05D003387 1.5e-07 59.7 64 51.6
Nn3g16524 Nelumbo nucifera HOM05D002893 ORTHO05D003387 1.5e-07 59.7 71 47.9
BcaC03g13510 Brassica carinata HOM05D002893 ORTHO05D003387 2.0e-07 59.3 93 44.1
BcaNung03174 Brassica carinata HOM05D002893 ORTHO05D003387 2.0e-07 59.3 73 45.2
Oeu058769.1 Olea europaea HOM05D002893 ORTHO05D003387 2.0e-07 59.3 72 47.2
Prupe.1G232000 Prunus persica HOM05D002893 ORTHO05D003387 2.0e-07 59.3 72 44.4
Ah.02g130670 Amaranthus hybridus HOM05D002893 ORTHO05D003387 2.6e-07 58.9 71 45.1
C02p06620 Brassica napus HOM05D002893 ORTHO05D003387 2.6e-07 58.9 73 43.8
SalBow8G1069 Salvia bowleyana HOM05D002893 ORTHO05D003387 2.6e-07 58.9 75 41.3
PGSC0003DMG400020219 Solanum tuberosum HOM05D002893 ORTHO05D003387 2.6e-07 58.9 73 47.9
arahy.Tifrunner.gnm1.ann1.53Z9F6 Arachis hypogaea HOM05D002893 ORTHO05D003387 3.4e-07 58.5 72 45.8
Cc07_g00610 Coffea canephora HOM05D002893 ORTHO05D003387 3.4e-07 58.5 72 47.2
Lj1g0008810 Lotus japonicus HOM05D002893 ORTHO05D003387 3.4e-07 58.5 72 47.2
Eucgr.I01662 Eucalyptus grandis HOM05D002893 ORTHO05D003387 4.4e-07 58.2 72 43.1
Psat3g177400 Pisum sativum HOM05D002893 ORTHO05D003387 4.4e-07 58.2 71 46.5
HPP92_021401 Vanilla planifolia HOM05D002893 ORTHO05D003387 4.4e-07 58.2 52 69.2
Medtr7g031370 Medicago truncatula HOM05D002893 ORTHO05D003387 5.8e-07 57.8 67 46.3
C09p62930 Brassica napus HOM05D002893 ORTHO05D003387 7.5e-07 57.4 73 41.1
BolC9t59130H Brassica oleracea HOM05D002893 ORTHO05D003387 7.5e-07 57.4 73 41.1
Lsat_1_v5_gn_8_149580 Lactuca sativa HOM05D002893 ORTHO05D003387 7.5e-07 57.4 72 50.0
THA.LOC104802381 Tarenaya hassleriana HOM05D002893 ORTHO05D003387 7.5e-07 57.4 72 43.1
Migut.E00032 Erythranthe guttata HOM05D002893 ORTHO05D003387 9.8e-07 57.0 74 43.2
Lalb_Chr02g0157821 Lupinus albus HOM05D002893 ORTHO05D003387 9.8e-07 57.0 73 46.6
TPR.G25633 Trifolium pratense HOM05D002893 ORTHO05D003387 9.8e-07 57.0 68 47.1
AT5G14230 Arabidopsis thaliana HOM05D002893 ORTHO05D003387 1.3e-06 56.6 74 40.5
BcaB01g06338 Brassica carinata HOM05D002893 ORTHO05D003387 1.3e-06 56.6 74 40.5
BcaC04g19051 Brassica carinata HOM05D002893 ORTHO05D003387 1.3e-06 56.6 73 41.1
A03p06490 Brassica napus HOM05D002893 ORTHO05D003387 1.3e-06 56.6 74 41.9
BraA03t09981Z Brassica rapa HOM05D002893 ORTHO05D003387 1.3e-06 56.6 74 41.9
HPP92_024639 Vanilla planifolia HOM05D002893 ORTHO05D003387 1.3e-06 56.6 79 43.0
AL6G24910 Arabidopsis lyrata HOM05D002893 ORTHO05D003387 1.7e-06 56.2 72 43.1
FvH4_4g24120 Fragaria vesca HOM05D002893 ORTHO05D003387 1.7e-06 56.2 72 40.3
FAN17G2054 Fragaria x ananassa HOM05D002893 ORTHO05D003387 1.7e-06 56.2 72 40.3
AUR62030703 Chenopodium quinoa HOM05D002893 ORTHO05D003387 2.2e-06 55.8 71 46.5
HanXRQChr15g0474971 Helianthus annuus HOM05D002893 ORTHO05D003387 2.9e-06 55.5 76 40.8
arahy.Tifrunner.gnm1.ann1.Y67UYZ Arachis hypogaea HOM05D002893 ORTHO05D003387 3.7e-06 55.1 71 47.9
A10p24240 Brassica napus HOM05D002893 ORTHO05D003387 3.7e-06 55.1 73 41.1
Ca_16477_v3 Cicer arietinum L. HOM05D002893 ORTHO05D003387 3.7e-06 55.1 72 40.3
Ca_29987_v3 Cicer arietinum L. HOM05D002893 ORTHO05D003387 3.7e-06 55.1 72 40.3
FAN12G2589 Fragaria x ananassa HOM05D002893 ORTHO05D003387 3.7e-06 55.1 72 38.9
BraA10t44489Z Brassica rapa HOM05D002893 ORTHO05D003387 4.9e-06 54.7 73 41.1
AUR62036343 Chenopodium quinoa HOM05D002893 ORTHO05D003387 4.9e-06 54.7 71 45.1
Oeu049154.1 Olea europaea HOM05D002893 ORTHO05D003387 4.9e-06 54.7 71 45.1
CSS0041404 Camellia sinensis var. sinensis HOM05D002893 ORTHO05D003387 6.4e-06 54.3 70 44.3
FAN07G1355 Fragaria x ananassa HOM05D002893 ORTHO05D003387 6.4e-06 54.3 72 40.3
SalBow1G0350 Salvia bowleyana HOM05D002893 ORTHO05D003387 6.4e-06 54.3 67 50.7
DCAR_011311 Daucus carota HOM05D002893 ORTHO05D003387 8.3e-06 53.9 72 40.3


User provided reference genes

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