Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_027083 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.5e-66 255.4 137 100.0
HPP92_011125 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.4e-26 121.7 164 51.8
HPP92_006544 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.2e-21 105.1 72 75.0
Ciclev10030726m.g Citrus clementina HOM05D003551 ORTHO05D004869 2.3e-19 99.4 152 43.4
HPP92_006539 Vanilla planifolia HOM05D003551 ORTHO05D004869 8.8e-19 97.4 115 53.0
HPP92_028576 Vanilla planifolia HOM05D003551 ORTHO05D004869 5.7e-18 94.7 87 64.4
HPP92_027653 Vanilla planifolia HOM05D003551 ORTHO05D004869 9.7e-18 94.0 94 60.6
HPP92_027994 Vanilla planifolia HOM05D003551 ORTHO05D004869 9.7e-18 94.0 98 59.2
Hma1.2p1_0079F.1_g041260 Hydrangea macrophylla HOM05D003551 ORTHO05D004869 8.3e-17 90.9 162 40.1
Dinv14754 Davidia involucrata HOM05D003551 ORTHO05D004869 1.1e-16 90.5 164 40.9
Atru.chr11.1973 Acer truncatum HOM05D003551 ORTHO05D004869 1.4e-16 90.1 152 45.4
Eucgr.H02450 Eucalyptus grandis HOM05D003551 ORTHO05D004869 1.4e-16 90.1 163 41.1
Manes.12G019500 Manihot esculenta HOM05D003551 ORTHO05D004869 1.4e-16 90.1 152 44.1
vmacro01109 Vaccinium macrocarpon HOM05D003551 ORTHO05D004869 1.4e-16 90.1 164 42.7
HPP92_006538 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.8e-16 89.7 83 61.4
Nitab4.5_0001290g0150 Nicotiana tabacum HOM05D003551 ORTHO05D004869 3.1e-16 89.0 153 43.8
QL05p021165 Quercus lobata HOM05D003551 ORTHO05D004869 4.1e-16 88.6 153 41.2
PGR119G0237 Punica granatum HOM05D003551 ORTHO05D004869 5.3e-16 88.2 163 41.1
ATR0824G018 Amborella trichopoda HOM05D003551 ORTHO05D004869 7.0e-16 87.8 164 39.6
MSTRG.7955 Avicennia marina HOM05D003551 ORTHO05D004869 7.0e-16 87.8 138 43.5
Cc11_g16150 Coffea canephora HOM05D003551 ORTHO05D004869 1.6e-15 86.7 135 43.7
Gohir.A12G268000 Gossypium hirsutum HOM05D003551 ORTHO05D004869 2.0e-15 86.3 152 41.4
Gohir.D12G268400 Gossypium hirsutum HOM05D003551 ORTHO05D004869 2.0e-15 86.3 152 41.4
Sabra08G0139300 Salix brachista HOM05D003551 ORTHO05D004869 2.0e-15 86.3 152 41.4
Gorai.008G288600 Gossypium raimondii HOM05D003551 ORTHO05D004869 2.7e-15 85.9 152 41.4
Nitab4.5_0004725g0020 Nicotiana tabacum HOM05D003551 ORTHO05D004869 2.7e-15 85.9 153 41.8
COL.COLO4_23531 Corchorus olitorius HOM05D003551 ORTHO05D004869 3.5e-15 85.5 152 43.4
Oeu028968.1 Olea europaea HOM05D003551 ORTHO05D004869 3.5e-15 85.5 152 42.8
HPP92_027649 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.5e-15 85.5 108 50.9
GSVIVG01000585001 Vitis vinifera HOM05D003551 ORTHO05D004869 3.5e-15 85.5 164 42.1
Oeu014152.4 Olea europaea HOM05D003551 ORTHO05D004869 4.5e-15 85.1 152 42.1
Solyc12g099890.2 Solanum lycopersicum HOM05D003551 ORTHO05D004869 4.5e-15 85.1 153 41.2
TAR374G0642 Trochodendron aralioides HOM05D003551 ORTHO05D004869 4.5e-15 85.1 163 40.5
HPP92_026938 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.5e-15 85.1 139 47.5
MD16G1105900 Malus domestica HOM05D003551 ORTHO05D004869 5.9e-15 84.7 164 37.2
CiPaw.06G064600 Carya illinoinensis HOM05D003551 ORTHO05D004869 7.7e-15 84.3 155 39.4
THA.LOC104809236 Tarenaya hassleriana HOM05D003551 ORTHO05D004869 7.7e-15 84.3 152 41.4
Nn4g22519 Nelumbo nucifera HOM05D003551 ORTHO05D004869 1.0e-14 84.0 151 42.4
Sopen12g034510 Solanum pennellii HOM05D003551 ORTHO05D004869 1.0e-14 84.0 153 39.9
PGSC0003DMG400004723 Solanum tuberosum HOM05D003551 ORTHO05D004869 1.0e-14 84.0 153 39.9
unitig_22.g6420 Utricularia gibba HOM05D003551 ORTHO05D004869 1.3e-14 83.6 137 42.3
TWI36G0896 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 1.7e-14 83.2 164 39.0
Peaxi162Scf00062g00716 Petunia axillaris HOM05D003551 ORTHO05D004869 2.2e-14 82.8 152 41.4
AL7G20520 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 2.9e-14 82.4 137 41.6
Prupe.1G240500 Prunus persica HOM05D003551 ORTHO05D004869 2.9e-14 82.4 164 36.0
Cfa009260 Carpinus fangiana HOM05D003551 ORTHO05D004869 3.8e-14 82.0 150 38.7
Lalb_Chr23g0277731 Lupinus albus HOM05D003551 ORTHO05D004869 3.8e-14 82.0 158 39.9
Rhsim12G0038300 Rhododendron simsii HOM05D003551 ORTHO05D004869 3.8e-14 82.0 164 41.5
CSS0025446 Camellia sinensis var. sinensis HOM05D003551 ORTHO05D004869 5.0e-14 81.6 164 37.8
Carub.0001s1289 Capsella rubella HOM05D003551 ORTHO05D004869 5.0e-14 81.6 152 41.4
Sed0023493 Sechium edule HOM05D003551 ORTHO05D004869 5.0e-14 81.6 162 38.3
Zm00001eb069620 Zea mays HOM05D003551 ORTHO05D004869 5.0e-14 81.6 163 39.3
CAN.G484.3 Capsicum annuum HOM05D003551 ORTHO05D004869 8.5e-14 80.9 152 38.8
Hund25033 Selenicereus undatus HOM05D003551 ORTHO05D004869 8.5e-14 80.9 163 38.7
Thhalv10006828m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 1.1e-13 80.5 152 40.8
Sp1g11680 Schrenkiella parvula HOM05D003551 ORTHO05D004869 1.1e-13 80.5 152 40.8
Os04g0630000 Oryza sativa ssp. japonica HOM05D003551 ORTHO05D004869 1.9e-13 79.7 163 37.4
HPP92_026598 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.9e-13 79.7 62 67.7
Phvul.001G256500 Phaseolus vulgaris HOM05D003551 ORTHO05D004869 3.2e-13 79.0 157 36.9
SalBow2G2049 Salvia bowleyana HOM05D003551 ORTHO05D004869 3.2e-13 79.0 135 40.7
Aa31LG1G1640 Aethionema arabicum HOM05D003551 ORTHO05D004869 4.2e-13 78.6 152 38.2
Cpa.g.sc33.80 Carica papaya HOM05D003551 ORTHO05D004869 7.2e-13 77.8 136 41.2
Potri.008G182900 Populus trichocarpa HOM05D003551 ORTHO05D004869 7.2e-13 77.8 152 38.2
Sc04g0005970 Simmondsia chinensis HOM05D003551 ORTHO05D004869 7.2e-13 77.8 148 35.8
Sc04g0005980 Simmondsia chinensis HOM05D003551 ORTHO05D004869 7.2e-13 77.8 148 35.8
BraA09t41676Z Brassica rapa HOM05D003551 ORTHO05D004869 9.4e-13 77.4 152 40.1
Actinidia01371 Actinidia chinensis HOM05D002413 ORTHO05D002638 1.2e-12 77.0 134 40.3
HanXRQChr08g0208471 Helianthus annuus HOM05D003551 ORTHO05D004869 1.2e-12 77.0 148 39.9
VMungo0540G0742 Vigna mungo HOM05D003551 ORTHO05D004869 1.2e-12 77.0 157 37.6
Psat2g160640 Pisum sativum HOM05D003551 ORTHO05D004869 1.6e-12 76.6 158 39.2
A09p63240 Brassica napus HOM05D003551 ORTHO05D004869 2.1e-12 76.3 152 40.1
CANSAT01G3182 Cannabis sativa HOM05D003551 ORTHO05D004869 2.1e-12 76.3 164 35.4
Carub.0003s0103 Capsella rubella HOM05D003551 ORTHO05D004869 2.1e-12 76.3 152 39.5
TWI34G1512 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 2.1e-12 76.3 155 40.6
AT4G31520 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 3.6e-12 75.5 137 38.7
C08p46730 Brassica napus HOM05D003551 ORTHO05D004869 3.6e-12 75.5 152 39.5
Duzib268G0822 Durio zibethinus HOM05D003551 ORTHO05D004869 3.6e-12 75.5 152 41.4
Thhalv10005577m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 3.6e-12 75.5 137 41.6
AL1G24840 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 4.7e-12 75.1 152 39.5
Glyma.11G244500 Glycine max HOM05D003551 ORTHO05D004869 4.7e-12 75.1 157 35.7
PSO017G3678 Papaver somniferum HOM05D003551 ORTHO05D004869 4.7e-12 75.1 147 40.1
PSO478G3924 Papaver somniferum HOM05D003551 ORTHO05D004869 4.7e-12 75.1 147 40.1
Lj1g0001310 Lotus japonicus HOM05D003551 ORTHO05D004869 6.1e-12 74.7 136 38.2
AT1G13160 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 8.0e-12 74.3 152 39.5
ClCG03G002050 Citrullus lanatus HOM05D003551 ORTHO05D004869 8.0e-12 74.3 163 36.2
RcHm_v2.0_Chr4g0432421 Rosa chinensis HOM05D003551 ORTHO05D004869 8.0e-12 74.3 160 34.4
HPP92_027088 Vanilla planifolia HOM05D003551 ORTHO05D004869 8.0e-12 74.3 159 37.1
BolC8t52212H Brassica oleracea HOM05D003551 ORTHO05D004869 1.0e-11 73.9 152 39.5
CARHR013530 Cardamine hirsuta HOM05D003551 ORTHO05D004869 1.0e-11 73.9 152 38.8
arahy.Tifrunner.gnm1.ann1.MWLQ6N Arachis hypogaea HOM05D003551 ORTHO05D004869 1.8e-11 73.2 146 37.7
Ca_25128_v3 Cicer arietinum L. HOM05D003551 ORTHO05D004869 1.8e-11 73.2 158 36.1
CsaV3_1G012700 Cucumis sativus L. HOM05D003551 ORTHO05D004869 1.8e-11 73.2 163 34.4
Migut.K00634 Erythranthe guttata HOM05D003551 ORTHO05D004869 1.8e-11 73.2 135 37.8
Lsat_1_v5_gn_8_153700 Lactuca sativa HOM05D003551 ORTHO05D004869 1.8e-11 73.2 147 38.1
LjContig00312_ERROPOS870357g0004032 Lotus japonicus HOM05D003551 ORTHO05D004869 1.8e-11 73.2 153 35.9
MELO3C026845.2 Cucumis melo HOM05D003551 ORTHO05D004869 2.3e-11 72.8 164 32.9
SGA_v2.0_scaffold92G28200 Striga asiatica HOM05D003551 ORTHO05D004869 2.3e-11 72.8 146 37.0
FAN12G2593 Fragaria x ananassa HOM05D003551 ORTHO05D004869 3.0e-11 72.4 160 33.1
TWI75G1217 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 3.0e-11 72.4 135 40.7
arahy.Tifrunner.gnm1.ann1.A5BQBU Arachis hypogaea HOM05D003551 ORTHO05D004869 4.0e-11 72.0 145 35.9
EL10Ac6g14297 Beta vulgaris HOM05D003551 ORTHO05D004869 4.0e-11 72.0 163 35.6
DCAR_007035 Daucus carota HOM05D003551 ORTHO05D004869 4.0e-11 72.0 147 38.1
FAN17G0358 Fragaria x ananassa HOM05D003551 ORTHO05D004869 4.0e-11 72.0 160 33.1
FAN22G1040 Fragaria x ananassa HOM05D003551 ORTHO05D004869 4.0e-11 72.0 160 33.1
HPP92_027078 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.0e-11 72.0 62 62.9
MELO3C022674.2 Cucumis melo HOM05D003551 ORTHO05D004869 5.2e-11 71.6 163 34.4
ECA240G1955 Erigeron canadensis HOM05D003551 ORTHO05D004869 6.8e-11 71.2 166 34.9
SalBow5G3625 Salvia bowleyana HOM05D003551 ORTHO05D004869 6.8e-11 71.2 135 38.5
CARHR068650 Cardamine hirsuta HOM05D003551 ORTHO05D004869 8.8e-11 70.9 137 40.1
Haze_12293 Corylus avellana HOM05D003551 ORTHO05D004869 8.8e-11 70.9 103 44.7
Medtr3g086350 Medicago truncatula HOM05D003551 ORTHO05D004869 8.8e-11 70.9 158 37.3
HPP92_006855 Vanilla planifolia HOM05D003551 ORTHO05D004869 8.8e-11 70.9 91 47.3
PSO017G4772 Papaver somniferum HOM05D003551 ORTHO05D004869 1.5e-10 70.1 161 36.6
Lsat_1_v5_gn_8_153780 Lactuca sativa HOM05D003551 ORTHO05D004869 2.6e-10 69.3 148 37.2
QL04p087069 Quercus lobata HOM05D003551 ORTHO05D004869 3.4e-10 68.9 109 42.2
TPR.G5678 Trifolium pratense HOM05D003551 ORTHO05D004869 7.5e-10 67.8 157 36.3
Zm00001eb279220 Zea mays HOM05D003551 ORTHO05D004869 7.5e-10 67.8 111 38.7
CDE02G2789 Ceratophyllum demersum HOM05D003551 ORTHO05D004869 9.8e-10 67.4 147 36.1
AUR62014112 Chenopodium quinoa HOM05D003551 ORTHO05D004869 9.8e-10 67.4 164 36.0
AUR62002805 Chenopodium quinoa HOM05D003551 ORTHO05D004869 8.3e-09 64.3 164 34.8
PSO063G2135 Papaver somniferum HOM05D003551 ORTHO05D004869 1.1e-08 63.9 144 37.5
FvH4_4g25230 Fragaria vesca HOM05D003551 ORTHO05D004869 1.4e-08 63.5 107 34.6
Lj6C816T3 Lonicera japonica HOM05D003551 ORTHO05D004869 1.4e-08 63.5 110 38.2
HPP92_006873 Vanilla planifolia HOM05D000450 ORTHO05D002608 3.1e-08 62.4 120 39.2
SEGI_37161 Sequoiadendron giganteum HOM05D003551 ORTHO05D004869 7.0e-08 61.2 144 31.9
Aqoxy3G00657 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 9.1e-08 60.8 146 33.6
Aqoxy3G01365 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 9.1e-08 60.8 146 33.6


User provided reference genes

Program Settings