Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_027078 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.5e-195 684.9 371 100.0
HPP92_011125 Vanilla planifolia HOM05D003551 ORTHO05D004869 9.8e-97 357.8 594 43.1
HPP92_027649 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.7e-70 270.0 294 57.5
HPP92_028576 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.7e-67 259.2 265 59.6
HPP92_006855 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.8e-53 214.2 233 58.4
HPP92_006576 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.7e-48 197.6 154 71.4
HPP92_027088 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.3e-45 188.0 307 45.3
HPP92_028371 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.3e-45 188.0 160 66.9
HPP92_028511 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.0e-45 186.8 207 55.6
HPP92_028550 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.5e-39 167.2 120 74.2
HPP92_006873 Vanilla planifolia HOM05D000450 ORTHO05D002608 6.0e-38 162.5 197 55.3
HPP92_026938 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.8e-35 153.7 364 38.7
CDE02G2789 Ceratophyllum demersum HOM05D003551 ORTHO05D004869 1.1e-34 151.8 497 30.4
HPP92_027994 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.2e-31 139.8 212 48.1
HPP92_006537 Vanilla planifolia HOM05D003551 ORTHO05D431158 2.1e-30 137.5 155 53.5
HPP92_006544 Vanilla planifolia HOM05D003551 ORTHO05D004869 6.1e-30 136.0 189 50.8
HPP92_027653 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.3e-29 134.0 174 52.3
HPP92_028492 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.0e-29 133.7 209 49.8
Nn4g22519 Nelumbo nucifera HOM05D003551 ORTHO05D004869 1.6e-27 127.9 602 25.9
Peaxi162Scf00062g00716 Petunia axillaris HOM05D003551 ORTHO05D004869 1.1e-26 125.2 519 25.8
HPP92_006539 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.1e-26 125.2 108 64.8
AUR62002805 Chenopodium quinoa HOM05D003551 ORTHO05D004869 2.4e-26 124.0 532 26.7
Hma1.2p1_0079F.1_g041260 Hydrangea macrophylla HOM05D003551 ORTHO05D004869 6.9e-26 122.5 605 27.3
HPP92_026598 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.2e-25 121.7 79 79.7
Zm00001eb069620 Zea mays HOM05D003551 ORTHO05D004869 1.5e-25 121.3 609 25.3
Haze_12293 Corylus avellana HOM05D003551 ORTHO05D004869 7.7e-25 119.0 240 37.5
HanXRQChr08g0208471 Helianthus annuus HOM05D003551 ORTHO05D004869 7.7e-25 119.0 268 37.7
vmacro01109 Vaccinium macrocarpon HOM05D003551 ORTHO05D004869 1.3e-24 118.2 237 37.6
Eucgr.H02450 Eucalyptus grandis HOM05D003551 ORTHO05D004869 2.9e-24 117.1 626 24.1
DCAR_007035 Daucus carota HOM05D003551 ORTHO05D004869 8.5e-24 115.5 302 32.8
COL.COLO4_23531 Corchorus olitorius HOM05D003551 ORTHO05D004869 1.9e-23 114.4 554 25.3
Oeu014152.4 Olea europaea HOM05D003551 ORTHO05D004869 1.9e-23 114.4 247 36.0
CiPaw.06G064600 Carya illinoinensis HOM05D003551 ORTHO05D004869 2.5e-23 114.0 595 23.9
Sabra08G0139300 Salix brachista HOM05D003551 ORTHO05D004869 3.2e-23 113.6 288 33.7
Prupe.1G240500 Prunus persica HOM05D003551 ORTHO05D004869 5.5e-23 112.8 290 33.4
TWI34G1512 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 7.2e-23 112.5 254 37.4
Oeu028968.1 Olea europaea HOM05D003551 ORTHO05D004869 1.6e-22 111.3 287 32.1
Cfa009260 Carpinus fangiana HOM05D003551 ORTHO05D004869 2.1e-22 110.9 236 36.9
Sed0023493 Sechium edule HOM05D003551 ORTHO05D004869 2.1e-22 110.9 301 35.5
Hund25033 Selenicereus undatus HOM05D003551 ORTHO05D004869 2.7e-22 110.5 293 32.1
MELO3C026845.2 Cucumis melo HOM05D003551 ORTHO05D004869 1.0e-21 108.6 615 23.7
PSO017G3678 Papaver somniferum HOM05D003551 ORTHO05D004869 1.0e-21 108.6 557 25.7
TWI75G1217 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 1.8e-21 107.8 260 36.5
GSVIVG01000585001 Vitis vinifera HOM05D003551 ORTHO05D004869 2.3e-21 107.5 249 35.7
MELO3C022674.2 Cucumis melo HOM05D003551 ORTHO05D004869 3.0e-21 107.1 613 24.0
Dinv14754 Davidia involucrata HOM05D003551 ORTHO05D004869 3.0e-21 107.1 305 36.1
Lsat_1_v5_gn_8_153700 Lactuca sativa HOM05D003551 ORTHO05D004869 3.0e-21 107.1 266 34.2
TAR374G0642 Trochodendron aralioides HOM05D003551 ORTHO05D004869 3.9e-21 106.7 294 37.1
AUR62014112 Chenopodium quinoa HOM05D003551 ORTHO05D004869 6.7e-21 105.9 589 24.6
ClCG03G002050 Citrullus lanatus HOM05D003551 ORTHO05D004869 6.7e-21 105.9 624 22.8
Atru.chr11.1973 Acer truncatum HOM05D003551 ORTHO05D004869 8.8e-21 105.5 285 34.0
Lalb_Chr23g0277731 Lupinus albus HOM05D003551 ORTHO05D004869 8.8e-21 105.5 285 33.3
HPP92_006538 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.5e-20 104.8 125 57.6
PSO017G4772 Papaver somniferum HOM05D003551 ORTHO05D004869 2.0e-20 104.4 267 32.6
EL10Ac6g14297 Beta vulgaris HOM05D003551 ORTHO05D004869 2.6e-20 104.0 272 32.4
Gohir.D12G268400 Gossypium hirsutum HOM05D003551 ORTHO05D004869 4.4e-20 103.2 296 32.1
Cc11_g16150 Coffea canephora HOM05D003551 ORTHO05D004869 5.7e-20 102.8 299 31.1
Lsat_1_v5_gn_8_153780 Lactuca sativa HOM05D003551 ORTHO05D004869 5.7e-20 102.8 263 33.8
Cpa.g.sc33.80 Carica papaya HOM05D003551 ORTHO05D004869 7.4e-20 102.4 612 24.8
Ciclev10030726m.g Citrus clementina HOM05D003551 ORTHO05D004869 7.4e-20 102.4 303 38.0
Gorai.008G288600 Gossypium raimondii HOM05D003551 ORTHO05D004869 7.4e-20 102.4 608 23.8
PGR119G0237 Punica granatum HOM05D003551 ORTHO05D004869 7.4e-20 102.4 308 35.7
FvH4_4g25230 Fragaria vesca HOM05D003551 ORTHO05D004869 9.7e-20 102.1 278 33.8
LjContig00312_ERROPOS870357g0004032 Lotus japonicus HOM05D003551 ORTHO05D004869 9.7e-20 102.1 285 33.3
HPP92_026597 Vanilla planifolia HOM05D003551 ORTHO05D430828 9.7e-20 102.1 112 58.0
Lj1g0001310 Lotus japonicus HOM05D003551 ORTHO05D004869 2.2e-19 100.9 289 32.2
PSO478G3924 Papaver somniferum HOM05D003551 ORTHO05D004869 2.2e-19 100.9 272 37.1
FAN12G2593 Fragaria x ananassa HOM05D003551 ORTHO05D004869 2.8e-19 100.5 277 33.6
MD16G1105900 Malus domestica HOM05D003551 ORTHO05D004869 3.7e-19 100.1 297 30.6
Gohir.A12G268000 Gossypium hirsutum HOM05D003551 ORTHO05D004869 4.8e-19 99.8 610 23.1
QL05p021165 Quercus lobata HOM05D003551 ORTHO05D004869 4.8e-19 99.8 622 24.4
CsaV3_1G012700 Cucumis sativus L. HOM05D003551 ORTHO05D004869 8.2e-19 99.0 632 22.6
FAN22G1040 Fragaria x ananassa HOM05D003551 ORTHO05D004869 8.2e-19 99.0 278 33.8
Glyma.11G244500 Glycine max HOM05D003551 ORTHO05D004869 1.1e-18 98.6 306 31.7
Solyc12g099890.2 Solanum lycopersicum HOM05D003551 ORTHO05D004869 1.1e-18 98.6 290 32.1
Aa31LG1G1640 Aethionema arabicum HOM05D003551 ORTHO05D004869 1.4e-18 98.2 278 38.5
PSO063G2135 Papaver somniferum HOM05D003551 ORTHO05D004869 1.4e-18 98.2 264 32.6
ATR0824G018 Amborella trichopoda HOM05D003551 ORTHO05D004869 2.4e-18 97.4 303 35.6
CSS0025446 Camellia sinensis var. sinensis HOM05D003551 ORTHO05D004869 2.4e-18 97.4 314 29.3
Os04g0630000 Oryza sativa ssp. japonica HOM05D003551 ORTHO05D004869 2.4e-18 97.4 312 31.1
TWI36G0896 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 2.4e-18 97.4 289 32.2
MSTRG.7955 Avicennia marina HOM05D003551 ORTHO05D004869 6.9e-18 95.9 301 27.9
Psat2g160640 Pisum sativum HOM05D003551 ORTHO05D004869 6.9e-18 95.9 301 30.6
Potri.008G182900 Populus trichocarpa HOM05D003551 ORTHO05D004869 9.1e-18 95.5 284 36.6
Rhsim12G0038300 Rhododendron simsii HOM05D003551 ORTHO05D004869 9.1e-18 95.5 602 23.3
Medtr3g086350 Medicago truncatula HOM05D003551 ORTHO05D004869 1.2e-17 95.1 296 32.1
Duzib268G0822 Durio zibethinus HOM05D003551 ORTHO05D004869 2.0e-17 94.4 616 26.9
Aqoxy3G00657 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 2.6e-17 94.0 580 23.1
VMungo0540G0742 Vigna mungo HOM05D003551 ORTHO05D004869 3.4e-17 93.6 297 30.3
Aqoxy3G01365 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 4.5e-17 93.2 580 23.1
RcHm_v2.0_Chr4g0432421 Rosa chinensis HOM05D003551 ORTHO05D004869 4.5e-17 93.2 281 31.7
AT4G31520 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 5.9e-17 92.8 277 36.1
Sp1g11680 Schrenkiella parvula HOM05D003551 ORTHO05D004869 7.7e-17 92.4 293 30.7
SalBow2G2049 Salvia bowleyana HOM05D003551 ORTHO05D004869 1.0e-16 92.0 287 29.6
TPR.G5678 Trifolium pratense HOM05D003551 ORTHO05D004869 1.0e-16 92.0 297 32.0
arahy.Tifrunner.gnm1.ann1.MWLQ6N Arachis hypogaea HOM05D003551 ORTHO05D004869 1.3e-16 91.7 281 31.0
Lj6C816T3 Lonicera japonica HOM05D003551 ORTHO05D004869 1.3e-16 91.7 241 31.5
HPP92_027084 Vanilla planifolia HOM05D003551 ORTHO05D430072 1.3e-16 91.7 105 54.3
Manes.12G019500 Manihot esculenta HOM05D003551 ORTHO05D004869 2.2e-16 90.9 301 29.9
Sopen12g034510 Solanum pennellii HOM05D003551 ORTHO05D004869 2.9e-16 90.5 293 30.7
SGA_v2.0_scaffold92G28200 Striga asiatica HOM05D003551 ORTHO05D004869 3.8e-16 90.1 292 31.5
CANSAT01G3182 Cannabis sativa HOM05D003551 ORTHO05D004869 5.0e-16 89.7 603 22.6
Ca_25128_v3 Cicer arietinum L. HOM05D003551 ORTHO05D004869 5.0e-16 89.7 300 29.3
Actinidia01371 Actinidia chinensis HOM05D002413 ORTHO05D002638 6.5e-16 89.4 85 58.8
Aqoxy6G03052 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 6.5e-16 89.4 241 39.4
Migut.K00634 Erythranthe guttata HOM05D003551 ORTHO05D004869 6.5e-16 89.4 278 34.5
ECA240G1955 Erigeron canadensis HOM05D003551 ORTHO05D004869 8.5e-16 89.0 296 32.4
Carub.0001s1289 Capsella rubella HOM05D003551 ORTHO05D004869 1.1e-15 88.6 291 34.7
CAN.G484.3 Capsicum annuum HOM05D003551 ORTHO05D004869 1.1e-15 88.6 601 21.8
unitig_22.g6420 Utricularia gibba HOM05D003551 ORTHO05D004869 1.1e-15 88.6 543 22.7
Sc04g0005980 Simmondsia chinensis HOM05D003551 ORTHO05D004869 1.4e-15 88.2 283 27.6
Phvul.001G256500 Phaseolus vulgaris HOM05D003551 ORTHO05D004869 2.5e-15 87.4 302 29.1
Sc04g0005970 Simmondsia chinensis HOM05D003551 ORTHO05D004869 4.2e-15 86.7 289 27.0
arahy.Tifrunner.gnm1.ann1.A5BQBU Arachis hypogaea HOM05D003551 ORTHO05D004869 2.7e-14 84.0 288 28.8
FAN17G0358 Fragaria x ananassa HOM05D003551 ORTHO05D004869 2.7e-14 84.0 298 27.5
THA.LOC104809236 Tarenaya hassleriana HOM05D003551 ORTHO05D004869 3.6e-14 83.6 311 29.3
Zm00001eb279220 Zea mays HOM05D003551 ORTHO05D004869 3.6e-14 83.6 85 56.5
Thhalv10005577m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 6.1e-14 82.8 268 33.6
AT1G13160 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 1.4e-13 81.6 287 36.2
AL1G24840 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 2.3e-13 80.9 287 34.5
C08p46730 Brassica napus HOM05D003551 ORTHO05D004869 3.0e-13 80.5 289 28.7
Thhalv10006828m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 3.0e-13 80.5 284 34.9
CARHR013530 Cardamine hirsuta HOM05D003551 ORTHO05D004869 8.8e-13 79.0 278 34.2
CARHR068650 Cardamine hirsuta HOM05D003551 ORTHO05D004869 8.8e-13 79.0 264 31.1
Nitab4.5_0004725g0020 Nicotiana tabacum HOM05D003551 ORTHO05D004869 1.1e-12 78.6 605 21.0
SEGI_37161 Sequoiadendron giganteum HOM05D003551 ORTHO05D004869 1.1e-12 78.6 297 26.9
HPP92_006552 Vanilla planifolia HOM05D003551 ORTHO05D431459 7.4e-12 75.9 68 64.7
Carub.0003s0103 Capsella rubella HOM05D003551 ORTHO05D004869 1.3e-11 75.1 282 33.7
BolC8t52212H Brassica oleracea HOM05D003551 ORTHO05D004869 2.8e-11 73.9 290 32.4
Nitab4.5_0001290g0150 Nicotiana tabacum HOM05D003551 ORTHO05D004869 3.7e-11 73.6 607 20.6
PGSC0003DMG400004723 Solanum tuberosum HOM05D003551 ORTHO05D004869 4.8e-11 73.2 603 23.5
Mapoly0084s0017 Marchantia polymorpha HOM05D003551 ORTHO05D004869 8.2e-11 72.4 285 29.1
AL7G20520 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 4.1e-10 70.1 346 31.2
QL04p087069 Quercus lobata HOM05D003551 ORTHO05D004869 5.3e-10 69.7 88 48.9
HPP92_026933 Vanilla planifolia HOM05D015067 ORTHO05D427257 5.3e-10 69.7 73 57.5
HPP92_027083 Vanilla planifolia HOM05D003551 ORTHO05D004869 9.1e-10 68.9 62 62.9
SHI17843 Sapria himalayana HOM05D003551 ORTHO05D000023 1.2e-09 68.6 186 27.4
A09p63240 Brassica napus HOM05D003551 ORTHO05D004869 1.6e-09 68.2 293 31.4
BraA09t41676Z Brassica rapa HOM05D003551 ORTHO05D004869 1.6e-09 68.2 293 31.4
Thecc.02G267000 Theobroma cacao HOM05D003551 ORTHO05D004869 1.6e-09 68.2 73 45.2
HPP92_006499 Vanilla planifolia HOM05D003551 ORTHO05D431715 4.5e-09 66.6 68 58.8
ATR0824G183 Amborella trichopoda HOM05D003551 ORTHO05D004869 5.9e-09 66.2 176 30.1
ECA234G0329 Erigeron canadensis HOM05D000967 ORTHO05D000796 1.0e-08 65.5 54 55.6
Atru.chr11.1974 Acer truncatum HOM05D003551 ORTHO05D004869 1.3e-08 65.1 174 28.2
HPP92_028483 Vanilla planifolia HOM05D003881 ORTHO05D004343 2.2e-08 64.3 37 89.2
TAR374G0468 Trochodendron aralioides HOM05D003551 ORTHO05D004869 2.9e-08 63.9 90 38.9
SalBow5G3625 Salvia bowleyana HOM05D003551 ORTHO05D004869 1.9e-07 61.2 237 25.7
Actinidia08115 Actinidia chinensis HOM05D003551 ORTHO05D004869 7.2e-07 59.3 66 48.5
HPP92_026825 Vanilla planifolia HOM05D003551 ORTHO05D004343 7.2e-07 59.3 33 93.9
arahy.Tifrunner.gnm1.ann1.X9TT4V Arachis hypogaea HOM05D003551 ORTHO05D004869 2.1e-06 57.8 434 22.4
Sed0014055 Sechium edule HOM05D003551 ORTHO05D004869 2.1e-06 57.8 44 56.8
arahy.Tifrunner.gnm1.ann1.5TZZ24 Arachis hypogaea HOM05D003551 ORTHO05D004869 8.0e-06 55.8 446 23.1


User provided reference genes

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