Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_026366 Vanilla planifolia HOM05D003927 ORTHO05D004905 3.2e-56 221.5 108 100.0
HPP92_016424 Vanilla planifolia HOM05D003927 ORTHO05D004905 4.2e-56 221.1 108 99.1
QL11p013470 Quercus lobata HOM05D003927 ORTHO05D004905 3.7e-52 208.0 107 90.7
Cfa000676 Carpinus fangiana HOM05D003927 ORTHO05D004905 2.4e-51 205.3 108 88.9
MD10G1229400 Malus domestica HOM05D003927 ORTHO05D004905 2.4e-51 205.3 108 88.9
Cpa.g.sc30.136 Carica papaya HOM05D003927 ORTHO05D004905 4.0e-51 204.5 108 88.0
AUR62037029 Chenopodium quinoa HOM05D003927 ORTHO05D004905 5.3e-51 204.1 108 87.0
Os08g0206900 Oryza sativa ssp. japonica HOM05D003927 ORTHO05D004905 5.3e-51 204.1 107 88.8
EL10Ac7g16905 Beta vulgaris HOM05D003927 ORTHO05D004905 6.9e-51 203.8 108 87.0
AUR62006193 Chenopodium quinoa HOM05D003927 ORTHO05D004905 6.9e-51 203.8 108 87.0
Haze_06142 Corylus avellana HOM05D003927 ORTHO05D004905 6.9e-51 203.8 108 88.0
Nn7g38278 Nelumbo nucifera HOM05D003927 ORTHO05D004905 6.9e-51 203.8 108 88.0
CiPaw.09G074500 Carya illinoinensis HOM05D003927 ORTHO05D004905 9.0e-51 203.4 108 87.0
Duzib248G0257 Durio zibethinus HOM05D003927 ORTHO05D004905 1.2e-50 203.0 108 87.0
Prupe.4G115400 Prunus persica HOM05D003927 ORTHO05D004905 1.2e-50 203.0 108 87.0
Thecc.02G005900 Theobroma cacao HOM05D003927 ORTHO05D004905 1.2e-50 203.0 108 87.0
COL.COLO4_17634 Corchorus olitorius HOM05D003927 ORTHO05D004905 1.5e-50 202.6 108 87.0
MBI18_g31367_MAGBIO Magnolia biondii HOM05D003927 ORTHO05D004905 2.0e-50 202.2 108 87.0
MD05G1248900 Malus domestica HOM05D003927 ORTHO05D004905 2.0e-50 202.2 108 87.0
Rhsim13G0129600 Rhododendron simsii HOM05D003927 ORTHO05D004905 2.0e-50 202.2 108 87.0
Zm00001eb070940 Zea mays HOM05D003927 ORTHO05D004905 2.0e-50 202.2 107 87.9
Zm00001eb430780 Zea mays HOM05D003927 ORTHO05D004905 2.0e-50 202.2 107 87.9
ClCG01G025630 Citrullus lanatus HOM05D003927 ORTHO05D004905 2.6e-50 201.8 108 85.2
MELO3C007022.2 Cucumis melo HOM05D003927 ORTHO05D004905 2.6e-50 201.8 108 85.2
CsaV3_6G052860 Cucumis sativus L. HOM05D003927 ORTHO05D004905 2.6e-50 201.8 108 85.2
Dinv29313 Davidia involucrata HOM05D003927 ORTHO05D004905 2.6e-50 201.8 108 87.0
FvH4_3g12660 Fragaria vesca HOM05D003927 ORTHO05D004905 2.6e-50 201.8 108 86.1
FAN16G1436 Fragaria x ananassa HOM05D003927 ORTHO05D004905 2.6e-50 201.8 108 86.1
FAN21G3157 Fragaria x ananassa HOM05D003927 ORTHO05D004905 2.6e-50 201.8 108 86.1
FAN25G3197 Fragaria x ananassa HOM05D003927 ORTHO05D004905 2.6e-50 201.8 108 86.1
Lalb_Chr07g0188401 Lupinus albus HOM05D003927 ORTHO05D004905 2.6e-50 201.8 108 86.1
Manes.03G074000 Manihot esculenta HOM05D003927 ORTHO05D004905 2.6e-50 201.8 108 87.0
TWI38G0647 Tripterygium wilfordii HOM05D003927 ORTHO05D004905 2.6e-50 201.8 108 87.0
Atru.chr10.419 Acer truncatum HOM05D003927 ORTHO05D004905 3.4e-50 201.4 108 87.0
Potri.003G074700 Populus trichocarpa HOM05D003927 ORTHO05D004905 3.4e-50 201.4 108 87.0
Gohir.D12G047200 Gossypium hirsutum HOM05D003927 ORTHO05D004905 4.5e-50 201.1 108 85.2
Gorai.008G049800 Gossypium raimondii HOM05D003927 ORTHO05D004905 4.5e-50 201.1 108 85.2
Sabra03G0045400 Salix brachista HOM05D003927 ORTHO05D004905 4.5e-50 201.1 108 87.0
Ah.08g210510 Amaranthus hybridus HOM05D003927 ORTHO05D004905 5.8e-50 200.7 108 86.1
Aqoxy3G04338 Aquilegia oxysepala HOM05D003927 ORTHO05D004905 5.8e-50 200.7 107 86.9
arahy.Tifrunner.gnm1.ann1.QMDN7F Arachis hypogaea HOM05D003927 ORTHO05D004905 7.6e-50 200.3 107 86.0
Ca_18249_v3 Cicer arietinum L. HOM05D003927 ORTHO05D004905 7.6e-50 200.3 108 85.2
Cc00_g22880 Coffea canephora HOM05D003927 ORTHO05D004905 7.6e-50 200.3 107 86.9
Gohir.A03G217900 Gossypium hirsutum HOM05D003927 ORTHO05D004905 7.6e-50 200.3 108 86.1
Lj2A344G38 Lonicera japonica HOM05D003927 ORTHO05D004905 7.6e-50 200.3 108 86.1
RcHm_v2.0_Chr5g0020631 Rosa chinensis HOM05D003927 ORTHO05D004905 7.6e-50 200.3 108 85.2
TWI15G0787 Tripterygium wilfordii HOM05D003927 ORTHO05D004905 7.6e-50 200.3 108 86.1
TAR626G0108 Trochodendron aralioides HOM05D003927 ORTHO05D004905 7.6e-50 200.3 108 86.1
arahy.Tifrunner.gnm1.ann1.YAS9I4 Arachis hypogaea HOM05D003927 ORTHO05D004905 9.9e-50 199.9 107 86.0
CANSAT64G2986 Cannabis sativa HOM05D003927 ORTHO05D004905 9.9e-50 199.9 107 87.9
DCAR_003771 Daucus carota HOM05D003927 ORTHO05D004905 9.9e-50 199.9 108 86.1
PSO541G2426 Papaver somniferum HOM05D003927 ORTHO05D004905 9.9e-50 199.9 109 88.1
SalBow8G3138 Salvia bowleyana HOM05D003927 ORTHO05D004905 9.9e-50 199.9 108 86.1
GSVIVG01012124001 Vitis vinifera HOM05D003927 ORTHO05D004905 9.9e-50 199.9 108 85.2
Sed0013384 Sechium edule HOM05D003927 ORTHO05D004905 1.3e-49 199.5 108 84.3
Ciclev10014997m.g Citrus clementina HOM05D003927 ORTHO05D004905 1.7e-49 199.1 108 85.2
Potri.001G159700 Populus trichocarpa HOM05D003927 ORTHO05D004905 1.7e-49 199.1 108 85.2
Sabra01G0132300 Salix brachista HOM05D003927 ORTHO05D004905 1.7e-49 199.1 108 85.2
SGA_v2.0_scaffold638G53308 Striga asiatica HOM05D003927 ORTHO05D004905 1.7e-49 199.1 108 85.2
SGA_v2.0_scaffold77G25372 Striga asiatica HOM05D003927 ORTHO05D004905 1.7e-49 199.1 108 85.2
CSS0033159 Camellia sinensis var. sinensis HOM05D003927 ORTHO05D004905 2.2e-49 198.7 108 85.2
Eucgr.E04308 Eucalyptus grandis HOM05D003927 ORTHO05D004905 2.2e-49 198.7 107 85.0
PSO675G6709 Papaver somniferum HOM05D003927 ORTHO05D004905 2.2e-49 198.7 109 87.2
Phvul.002G190700 Phaseolus vulgaris HOM05D003927 ORTHO05D004905 2.2e-49 198.7 108 85.2
VMungo0251G3294 Vigna mungo HOM05D003927 ORTHO05D004905 2.2e-49 198.7 108 85.2
Hma1.2p1_0510F.1_g168820 Hydrangea macrophylla HOM05D003927 ORTHO05D004905 2.9e-49 198.4 107 86.0
Gohir.A12G048400 Gossypium hirsutum HOM05D003927 ORTHO05D004905 3.8e-49 198.0 108 84.3
Lsat_1_v5_gn_2_61101 Lactuca sativa HOM05D003927 ORTHO05D004905 3.8e-49 198.0 108 86.1
Lj4g0018518 Lotus japonicus HOM05D003927 ORTHO05D004905 3.8e-49 198.0 108 81.5
Medtr4g094668 Medicago truncatula HOM05D003927 ORTHO05D004905 3.8e-49 198.0 108 83.3
CDE12G0287 Ceratophyllum demersum HOM05D003927 ORTHO05D004905 4.9e-49 197.6 108 87.0
Thhalv10007394m.g Eutrema salsugineum HOM05D003927 ORTHO05D004905 4.9e-49 197.6 108 83.3
Actinidia22422 Actinidia chinensis HOM05D003927 ORTHO05D004905 6.4e-49 197.2 105 86.7
AT2G35020 Arabidopsis thaliana HOM05D003927 ORTHO05D004905 6.4e-49 197.2 108 83.3
Duzib132G1257 Durio zibethinus HOM05D003927 ORTHO05D004905 6.4e-49 197.2 108 83.3
Glyma.08G086700 Glycine max HOM05D003927 ORTHO05D004905 6.4e-49 197.2 108 84.3
Peaxi162Scf00199g00517 Petunia axillaris HOM05D003927 ORTHO05D004905 6.4e-49 197.2 108 83.3
PGR042G2298 Punica granatum HOM05D003927 ORTHO05D004905 6.4e-49 197.2 107 84.1
ATR0763G183 Amborella trichopoda HOM05D003927 ORTHO05D004905 8.4e-49 196.8 107 86.0
ECA238G4411 Erigeron canadensis HOM05D003927 ORTHO05D004905 8.4e-49 196.8 108 85.2
Oeu058944.1 Olea europaea HOM05D003927 ORTHO05D004905 8.4e-49 196.8 108 84.3
Sp4g17300 Schrenkiella parvula HOM05D003927 ORTHO05D004905 8.4e-49 196.8 107 83.2
BcaB02g09488 Brassica carinata HOM05D003927 ORTHO05D004905 1.1e-48 196.4 107 83.2
BcaC07g37780 Brassica carinata HOM05D003927 ORTHO05D004905 1.1e-48 196.4 108 83.3
A08p10790 Brassica napus HOM05D003927 ORTHO05D004905 1.1e-48 196.4 108 83.3
BolC8t48168H Brassica oleracea HOM05D003927 ORTHO05D004905 1.1e-48 196.4 108 83.3
BraA08t33076Z Brassica rapa HOM05D003927 ORTHO05D004905 1.1e-48 196.4 108 83.3
Sp1g26910 Schrenkiella parvula HOM05D003927 ORTHO05D004905 1.1e-48 196.4 108 83.3
SGA_v2.0_scaffold298G47698 Striga asiatica HOM05D003927 ORTHO05D004905 1.1e-48 196.4 105 86.7
Aa31LG9G16190 Aethionema arabicum HOM05D003927 ORTHO05D004905 1.4e-48 196.1 107 83.2
AL1G45460 Arabidopsis lyrata HOM05D003927 ORTHO05D004905 1.4e-48 196.1 108 82.4
BcaC02g11582 Brassica carinata HOM05D003927 ORTHO05D004905 1.4e-48 196.1 107 83.2
A05p10690 Brassica napus HOM05D003927 ORTHO05D004905 1.4e-48 196.1 107 83.2
C04p13780 Brassica napus HOM05D003927 ORTHO05D004905 1.4e-48 196.1 107 83.2
BolC4t22968H Brassica oleracea HOM05D003927 ORTHO05D004905 1.4e-48 196.1 107 83.2
BraA05t20009Z Brassica rapa HOM05D003927 ORTHO05D004905 1.4e-48 196.1 107 83.2
Carub.0001s2946 Capsella rubella HOM05D003927 ORTHO05D004905 1.4e-48 196.1 108 82.4
CAN.G149.2 Capsicum annuum HOM05D003927 ORTHO05D004905 1.4e-48 196.1 108 83.3
CARHR030580 Cardamine hirsuta HOM05D003927 ORTHO05D004905 1.4e-48 196.1 108 82.4
CARHR129180 Cardamine hirsuta HOM05D003927 ORTHO05D004905 1.4e-48 196.1 108 82.4
Thhalv10016553m.g Eutrema salsugineum HOM05D003927 ORTHO05D004905 1.4e-48 196.1 107 83.2
HanXRQChr14g0440241 Helianthus annuus HOM05D003927 ORTHO05D004905 1.4e-48 196.1 108 85.2
AL4G31040 Arabidopsis lyrata HOM05D003927 ORTHO05D004905 1.9e-48 195.7 108 82.4
TPR.G2935 Trifolium pratense HOM05D003927 ORTHO05D004905 2.4e-48 195.3 108 80.6
Aa31LG2G15040 Aethionema arabicum HOM05D003927 ORTHO05D004905 3.2e-48 194.9 108 82.4
BcaB07g32771 Brassica carinata HOM05D003927 ORTHO05D004905 3.2e-48 194.9 108 82.4
BcaC05g27140 Brassica carinata HOM05D003927 ORTHO05D004905 3.2e-48 194.9 108 82.4
A09p35130 Brassica napus HOM05D003927 ORTHO05D004905 3.2e-48 194.9 108 82.4
C05p30260 Brassica napus HOM05D003927 ORTHO05D004905 3.2e-48 194.9 108 82.4
BolC5t31766H Brassica oleracea HOM05D003927 ORTHO05D004905 3.2e-48 194.9 108 82.4
THA.LOC104814353 Tarenaya hassleriana HOM05D003927 ORTHO05D004905 4.2e-48 194.5 107 82.2
BraA09t39043Z Brassica rapa HOM05D003927 ORTHO05D004905 7.1e-48 193.7 108 81.5
BcaB04g18183 Brassica carinata HOM05D003927 ORTHO05D004905 1.2e-47 193.0 108 82.4
CANSAT35G1049 Cannabis sativa HOM05D003927 ORTHO05D004905 1.2e-47 193.0 106 83.0
PGR004G1431 Punica granatum HOM05D003927 ORTHO05D004905 1.2e-47 193.0 106 84.0
Solyc02g068530.4 Solanum lycopersicum HOM05D003927 ORTHO05D004905 1.6e-47 192.6 108 80.6
Sopen02g017670 Solanum pennellii HOM05D003927 ORTHO05D004905 1.6e-47 192.6 108 80.6
PGSC0003DMG400010448 Solanum tuberosum HOM05D003927 ORTHO05D004905 1.6e-47 192.6 108 80.6
Psat7g088440 Pisum sativum HOM05D003927 ORTHO05D004905 2.7e-47 191.8 108 81.5
MSTRG.7601 Avicennia marina HOM05D003927 ORTHO05D004905 3.5e-47 191.4 105 82.9
Carub.0004s1671 Capsella rubella HOM05D003927 ORTHO05D004905 3.5e-47 191.4 101 86.1
HanXRQChr15g0483481 Helianthus annuus HOM05D003927 ORTHO05D004905 3.5e-47 191.4 108 82.4
SGA_v2.0_scaffold175G39352 Striga asiatica HOM05D003927 ORTHO05D004905 3.5e-47 191.4 102 85.3
Gorai.005G268300 Gossypium raimondii HOM05D003927 ORTHO05D004905 6.0e-47 190.7 108 84.3
Migut.M01998 Erythranthe guttata HOM05D003927 ORTHO05D004905 7.9e-47 190.3 108 82.4
Hund12931 Selenicereus undatus HOM05D003927 ORTHO05D004905 3.0e-46 188.3 136 69.9
SEGI_30940 Sequoiadendron giganteum HOM05D003927 ORTHO05D004905 1.1e-45 186.4 105 80.0
THA.LOC104798559 Tarenaya hassleriana HOM05D003927 ORTHO05D004905 3.3e-45 184.9 107 80.4
SMO351G0243 Selaginella moellendorffii HOM05D003927 ORTHO05D004905 2.9e-41 171.8 104 77.9
Lj1C1147G9 Lonicera japonica HOM05D003927 ORTHO05D004905 1.4e-40 169.5 87 88.5
Zm00001eb413790 Zea mays HOM05D003927 ORTHO05D004905 1.4e-40 169.5 107 78.5
HanXRQChr15g0483471 Helianthus annuus HOM05D003927 ORTHO05D004905 1.9e-40 169.1 126 67.5
Nitab4.5_0006246g0020 Nicotiana tabacum HOM05D003927 ORTHO05D004905 1.0e-38 163.3 84 86.9
TAR625G0767 Trochodendron aralioides HOM05D003927 ORTHO05D004905 8.5e-33 143.7 76 88.2
Dinv10533 Davidia involucrata HOM05D003927 ORTHO05D004905 3.2e-32 141.7 78 84.6
TAR624G0604 Trochodendron aralioides HOM05D003927 ORTHO05D004905 3.2e-32 141.7 79 83.5
TAR628G0742 Trochodendron aralioides HOM05D003927 ORTHO05D004905 7.2e-32 140.6 75 88.0
Glyma.05G132100 Glycine max HOM05D003927 ORTHO05D004905 4.6e-31 137.9 76 84.2
Gohir.D02G239900 Gossypium hirsutum HOM05D003927 ORTHO05D004905 1.0e-30 136.7 108 63.9
SHI20747 Sapria himalayana HOM05D003927 ORTHO05D004905 3.0e-30 135.2 79 79.7
unitig_748.g7494 Utricularia gibba HOM05D003927 ORTHO05D004905 9.4e-24 113.6 64 82.8
Sp2g07060 Schrenkiella parvula HOM05D003281 ORTHO05D004128 3.9e-22 108.2 86 61.6
CBR_g45707 Chara braunii HOM05D003927 ORTHO05D004905 6.7e-22 107.5 112 49.1
Nitab4.5_0000443g0090 Nicotiana tabacum HOM05D003927 ORTHO05D004905 1.4e-19 99.8 52 86.5
Cre07.g345300 Chlamydomonas reinhardtii HOM05D003927 ORTHO05D004905 2.0e-18 95.9 102 51.0
PRCOL_00005739 Prasinoderma coloniale HOM05D003927 ORTHO05D004905 2.1e-15 85.9 100 48.0
Cfa023099 Carpinus fangiana HOM05D003927 ORTHO05D004905 4.7e-15 84.7 106 42.5
MCO02G083 Micromonas commoda HOM05D003927 ORTHO05D004905 2.6e-13 79.0 104 41.3
Atru.ctg1436.5 Acer truncatum HOM05D003927 ORTHO05D004905 9.4e-08 60.5 86 37.2
Pp3c15_14250 Physcomitrium patens HOM05D007300 ORTHO05D009301 4.7e-07 58.2 59 57.6
AagrBONN_evm.TU.Sc2ySwM_228.1844 Anthoceros agrestis HOM05D007300 ORTHO05D004905 8.0e-07 57.4 54 59.3
Pp3c4_17200 Physcomitrium patens HOM05D003927 ORTHO05D004905 1.4e-06 56.6 59 59.3
Mapoly0019s0078 Marchantia polymorpha HOM05D007300 ORTHO05D009301 4.0e-06 55.1 59 54.2


User provided reference genes

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