Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_026334 Vanilla planifolia HOM05D003229 ORTHO05D003835 1.9e-217 759.2 484 100.0
TAR636G2352 Trochodendron aralioides HOM05D003229 ORTHO05D003835 1.8e-42 177.9 497 39.2
Haze_23616 Corylus avellana HOM05D003229 ORTHO05D003835 4.9e-40 169.9 491 33.8
EL10Ac7g16254 Beta vulgaris HOM05D003229 ORTHO05D003835 1.8e-37 161.4 491 40.9
QL01p018824 Quercus lobata HOM05D003229 ORTHO05D003835 2.3e-37 161.0 524 36.8
Nn2g14458 Nelumbo nucifera HOM05D003229 ORTHO05D003835 2.5e-36 157.5 480 37.7
PSO384G4356 Papaver somniferum HOM05D003229 ORTHO05D003835 3.3e-36 157.1 459 34.0
CDE05G3619 Ceratophyllum demersum HOM05D003229 ORTHO05D003835 1.3e-35 155.2 451 41.5
Cfa010230 Carpinus fangiana HOM05D003229 ORTHO05D003835 1.6e-35 154.8 355 38.6
Thecc.05G214900 Theobroma cacao HOM05D003229 ORTHO05D003835 3.7e-35 153.7 516 36.0
GSVIVG01037516001 Vitis vinifera HOM05D003229 ORTHO05D003835 6.2e-35 152.9 438 33.3
Cc01_g08150 Coffea canephora HOM05D003229 ORTHO05D003835 1.1e-34 152.1 447 38.9
Sc21g0006640 Simmondsia chinensis HOM05D003229 ORTHO05D003835 1.1e-34 152.1 490 35.1
Hma1.2p1_0218F.1_g092270 Hydrangea macrophylla HOM05D003229 ORTHO05D003835 1.4e-34 151.8 514 31.9
Cpa.g.sc103.35 Carica papaya HOM05D003229 ORTHO05D003835 2.4e-34 151.0 490 35.7
CDE01G0204 Ceratophyllum demersum HOM05D003229 ORTHO05D003835 2.4e-34 151.0 481 43.5
SGA_v2.0_scaffold16G07545 Striga asiatica HOM05D003229 ORTHO05D003835 3.1e-34 150.6 499 34.9
arahy.Tifrunner.gnm1.ann1.M286MP Arachis hypogaea HOM05D003229 ORTHO05D003835 1.5e-33 148.3 516 33.7
Ciclev10028298m.g Citrus clementina HOM05D003229 ORTHO05D003835 3.4e-33 147.1 452 30.3
Gohir.A13G086615 Gossypium hirsutum HOM05D003229 ORTHO05D003835 4.5e-33 146.7 515 36.1
TWI31G0893 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 1.3e-32 145.2 488 32.2
CiPaw.13G105300 Carya illinoinensis HOM05D003229 ORTHO05D003835 2.9e-32 144.1 482 32.0
RcHm_v2.0_Chr6g0255381 Rosa chinensis HOM05D003229 ORTHO05D003835 2.9e-32 144.1 480 40.2
arahy.Tifrunner.gnm1.ann1.B3GIUW Arachis hypogaea HOM05D003229 ORTHO05D003835 3.8e-32 143.7 517 31.9
PSO339G4047 Papaver somniferum HOM05D003229 ORTHO05D003835 6.5e-32 142.9 432 34.5
Migut.N02427 Erythranthe guttata HOM05D003229 ORTHO05D003835 1.4e-31 141.7 492 34.8
CSS0045009 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 1.9e-31 141.4 467 37.9
Gorai.010G139700 Gossypium raimondii HOM05D003229 ORTHO05D003835 2.5e-31 141.0 513 34.9
Oeu048812.1 Olea europaea HOM05D003229 ORTHO05D003835 2.5e-31 141.0 501 37.3
Oeu058180.2 Olea europaea HOM05D003229 ORTHO05D003835 4.2e-31 140.2 494 36.2
Gohir.D13G092701 Gossypium hirsutum HOM05D003229 ORTHO05D003835 7.1e-31 139.4 513 34.9
Oeu048813.5 Olea europaea HOM05D003229 ORTHO05D003835 9.3e-31 139.0 501 37.1
Phvul.006G006900 Phaseolus vulgaris HOM05D003229 ORTHO05D003835 2.1e-30 137.9 408 36.5
PGSC0003DMG400002995 Solanum tuberosum HOM05D003229 ORTHO05D003835 1.8e-29 134.8 455 32.3
TWI79G1121 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 1.8e-29 134.8 408 34.1
Peaxi162Scf01091g00018 Petunia axillaris HOM05D003229 ORTHO05D003835 2.3e-29 134.4 419 36.8
MSTRG.12405 Avicennia marina HOM05D003229 ORTHO05D003835 3.0e-29 134.0 501 37.7
Glyma.20G055200 Glycine max HOM05D003229 ORTHO05D003835 3.0e-29 134.0 418 39.2
Atru.chr3.3041 Acer truncatum HOM05D003229 ORTHO05D003835 5.1e-29 133.3 410 36.1
SGA_v2.0_scaffold82G26251 Striga asiatica HOM05D003229 ORTHO05D003835 5.1e-29 133.3 359 36.2
Solyc11g071690.3 Solanum lycopersicum HOM05D003229 ORTHO05D003835 6.7e-29 132.9 465 35.5
Manes.11G104500 Manihot esculenta HOM05D003229 ORTHO05D003835 1.5e-28 131.7 308 45.5
Duzib177G0022 Durio zibethinus HOM05D003229 ORTHO05D003835 1.9e-28 131.3 502 32.7
Eucgr.J00598 Eucalyptus grandis HOM05D003229 ORTHO05D003835 2.5e-28 131.0 332 38.9
HanXRQChr05g0137001 Helianthus annuus HOM05D003229 ORTHO05D003835 2.5e-28 131.0 305 43.9
Lj2C839T18 Lonicera japonica HOM05D003229 ORTHO05D003835 3.3e-28 130.6 258 37.6
ECA238G1805 Erigeron canadensis HOM05D000006 ORTHO05D000001 4.3e-28 130.2 298 44.6
Lalb_Chr17g0347381 Lupinus albus HOM05D003229 ORTHO05D003835 7.4e-28 129.4 454 35.7
Sopen06g030210 Solanum pennellii HOM05D003229 ORTHO05D003835 9.7e-28 129.0 470 37.0
AUR62020197 Chenopodium quinoa HOM05D003229 ORTHO05D003835 1.6e-27 128.3 470 30.2
FvH4_2g05241 Fragaria vesca HOM05D003229 ORTHO05D003835 2.2e-27 127.9 479 39.0
FAN24G0320 Fragaria x ananassa HOM05D003229 ORTHO05D003835 2.2e-27 127.9 479 39.0
MD03G1161300 Malus domestica HOM05D003229 ORTHO05D003835 2.2e-27 127.9 506 35.6
Hund20968 Selenicereus undatus HOM05D003229 ORTHO05D003835 2.8e-27 127.5 474 38.4
FAN27G0679 Fragaria x ananassa HOM05D003229 ORTHO05D003835 3.7e-27 127.1 481 38.5
Dinv32144 Davidia involucrata HOM05D003229 ORTHO05D003835 6.3e-27 126.3 292 41.8
Lj6g0007817 Lotus japonicus HOM05D003229 ORTHO05D003835 8.2e-27 125.9 412 36.9
Zm00001eb200300 Zea mays HOM05D003229 ORTHO05D003835 8.2e-27 125.9 471 44.4
Sopen11g029360 Solanum pennellii HOM05D003229 ORTHO05D003835 1.1e-26 125.6 388 36.3
PGSC0003DMG400005910 Solanum tuberosum HOM05D003229 ORTHO05D003835 1.1e-26 125.6 467 36.4
ATR0697G070 Amborella trichopoda HOM05D003229 ORTHO05D003835 1.4e-26 125.2 382 42.9
Glyma.13G028000 Glycine max HOM05D003229 ORTHO05D003835 1.4e-26 125.2 416 36.5
Solyc06g073810.4 Solanum lycopersicum HOM05D003229 ORTHO05D003835 1.8e-26 124.8 470 33.6
MELO3C017380.2 Cucumis melo HOM05D003229 ORTHO05D003835 3.1e-26 124.0 303 34.3
AUR62001585 Chenopodium quinoa HOM05D003229 ORTHO05D003835 5.3e-26 123.2 481 29.9
Duzib128G0535 Durio zibethinus HOM05D003229 ORTHO05D003835 9.0e-26 122.5 513 32.4
Ah.08g222380 Amaranthus hybridus HOM05D003229 ORTHO05D003835 1.5e-25 121.7 512 35.5
DCAR_012260 Daucus carota HOM05D003229 ORTHO05D003835 4.5e-25 120.2 305 35.4
VMungo0540G0117 Vigna mungo HOM05D003229 ORTHO05D003835 4.5e-25 120.2 410 34.9
TPR.G15596 Trifolium pratense HOM05D003229 ORTHO05D003835 7.7e-25 119.4 344 41.6
Ca_16267_v3 Cicer arietinum L. HOM05D003229 ORTHO05D009053 2.2e-24 117.9 376 38.3
THA.LOC104810972 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 2.9e-24 117.5 261 36.4
Sed0019248 Sechium edule HOM05D003229 ORTHO05D003835 5.0e-24 116.7 326 34.4
CSS0043544 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 1.9e-23 114.8 289 34.9
Nitab4.5_0010116g0010 Nicotiana tabacum HOM05D003229 ORTHO05D003835 2.5e-23 114.4 468 30.6
Sabra09G0121900 Salix brachista HOM05D003229 ORTHO05D003835 4.2e-23 113.6 313 44.7
BraA06t25329Z Brassica rapa HOM05D003229 ORTHO05D003835 2.7e-22 110.9 264 36.4
CsaV3_1G004530 Cucumis sativus L. HOM05D003229 ORTHO05D003835 7.9e-22 109.4 308 41.6
Lsat_1_v5_gn_0_39260 Lactuca sativa HOM05D003229 ORTHO05D003835 7.9e-22 109.4 434 32.3
AT3G43590 Arabidopsis thaliana HOM05D003229 ORTHO05D003835 1.0e-21 109.0 301 33.9
AL5G21520 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 1.8e-21 108.2 316 33.2
CARHR287360 Cardamine hirsuta HOM05D003229 ORTHO05D003835 1.8e-21 108.2 291 34.0
ECA240G3284 Erigeron canadensis HOM05D003229 ORTHO05D003835 3.0e-21 107.5 135 49.6
A06p22470 Brassica napus HOM05D003229 ORTHO05D003835 3.9e-21 107.1 259 37.1
A06p22530 Brassica napus HOM05D003229 ORTHO05D003835 3.9e-21 107.1 259 37.1
PGR119G2320 Punica granatum HOM05D003229 ORTHO05D003835 3.9e-21 107.1 332 38.0
Aa31LG4G13390 Aethionema arabicum HOM05D003229 ORTHO05D003835 5.1e-21 106.7 284 34.5
C03p68590 Brassica napus HOM05D003229 ORTHO05D003835 5.1e-21 106.7 259 38.2
BolC3t19117H Brassica oleracea HOM05D003229 ORTHO05D003835 5.1e-21 106.7 259 38.2
MBI11_g25050_MAGBIO Magnolia biondii HOM05D003229 ORTHO05D003835 6.7e-21 106.3 632 30.9
Carub.0005s0931 Capsella rubella HOM05D003229 ORTHO05D003835 3.3e-20 104.0 313 32.6
Potri.009G155500 Populus trichocarpa HOM05D003229 ORTHO05D003835 9.7e-20 102.4 406 37.7
Aqoxy1G00567 Aquilegia oxysepala HOM05D003229 ORTHO05D003835 1.3e-19 102.1 450 40.0
Thhalv10020505m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 2.8e-19 100.9 290 33.1
TPR.G13300 Trifolium pratense HOM05D003229 ORTHO05D003835 2.8e-19 100.9 190 50.5
Zm00001eb114310 Zea mays HOM05D003229 ORTHO05D003835 4.8e-19 100.1 501 40.9
CANSAT35G0213 Cannabis sativa HOM05D003229 ORTHO05D003835 6.3e-19 99.8 430 36.5
ClCG06G014150 Citrullus lanatus HOM05D003229 ORTHO05D003835 8.2e-19 99.4 349 32.4
AL5G21420 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 1.4e-18 98.6 177 37.9
Carub.0005s0918 Capsella rubella HOM05D003229 ORTHO05D003835 1.4e-18 98.6 289 32.2
Ciclev10011928m.g Citrus clementina HOM05D003229 ORTHO05D003835 1.4e-18 98.6 154 35.1
FAN15G3758 Fragaria x ananassa HOM05D003229 ORTHO05D003835 1.4e-18 98.6 192 37.5
Ca_06127_v3 Cicer arietinum L. HOM05D003229 ORTHO05D003835 3.1e-18 97.4 155 48.4
Thhalv10019590m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 3.1e-18 97.4 288 33.3
FAN20G2341 Fragaria x ananassa HOM05D003229 ORTHO05D003835 6.9e-18 96.3 192 37.5
GSVIVG01022494001 Vitis vinifera HOM05D003229 ORTHO05D003835 6.9e-18 96.3 132 34.1
Os11g0573200 Oryza sativa ssp. japonica HOM05D003229 ORTHO05D003835 2.0e-17 94.7 219 41.6
SEGI_34455 Sequoiadendron giganteum HOM05D003229 ORTHO05D003835 3.4e-17 94.0 205 38.5
Psat2g023800 Pisum sativum HOM05D003229 ORTHO05D003835 5.9e-17 93.2 185 48.1
HanXRQChr03g0089231 Helianthus annuus HOM05D003229 ORTHO05D003835 7.7e-17 92.8 282 33.7
Sabra04G0131600 Salix brachista HOM05D003229 ORTHO05D003835 7.7e-17 92.8 311 37.0
Actinidia12901 Actinidia chinensis HOM05D003229 ORTHO05D003835 3.8e-16 90.5 351 29.3
Sp5g17570 Schrenkiella parvula HOM05D003229 ORTHO05D003835 3.8e-16 90.5 253 34.0
Potri.004G193500 Populus trichocarpa HOM05D003229 ORTHO05D003835 5.0e-16 90.1 430 39.5
Lalb_Chr13g0294131 Lupinus albus HOM05D003229 ORTHO05D003835 1.1e-15 89.0 200 46.0
CSS0010675 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 1.4e-15 88.6 207 35.7
LjContig00564g0024504 Lotus japonicus HOM05D003229 ORTHO05D003835 5.5e-15 86.7 133 43.6
Sed0028007 Sechium edule HOM05D003229 ORTHO05D003835 7.2e-15 86.3 166 38.6
vmacro14302 Vaccinium macrocarpon HOM05D003229 ORTHO05D003835 9.4e-15 85.9 151 41.1
Rhsim01G0198100 Rhododendron simsii HOM05D003229 ORTHO05D003835 1.2e-14 85.5 117 48.7
CBR_g8477 Chara braunii HOM05D003229 ORTHO05D000407 1.6e-14 85.1 190 36.8
CARHR267130 Cardamine hirsuta HOM05D003229 ORTHO05D003835 2.1e-14 84.7 183 35.0
Manes.04G063962 Manihot esculenta HOM05D003229 ORTHO05D003835 1.0e-13 82.4 303 27.4
Atru.chr8.1245 Acer truncatum HOM05D003229 ORTHO05D003835 2.3e-13 81.3 132 33.3
Gohir.A13G089500 Gossypium hirsutum HOM05D003229 ORTHO05D003835 2.3e-13 81.3 122 32.0
Nitab4.5_0000875g0020 Nicotiana tabacum HOM05D003229 ORTHO05D003835 3.0e-13 80.9 476 26.1
Mapoly0019s0115 Marchantia polymorpha HOM05D003229 ORTHO05D003835 5.1e-13 80.1 331 37.8
Peaxi162Scf00355g00005 Petunia axillaris HOM05D003229 ORTHO05D003835 1.5e-12 78.6 74 47.3
COL.COLO4_29455 Corchorus olitorius HOM05D003229 ORTHO05D003835 2.0e-12 78.2 136 31.6
TWI74G0877 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 2.0e-12 78.2 201 31.8
Nitab4.5_0013078g0010 Nicotiana tabacum HOM05D003229 ORTHO05D003835 2.6e-12 77.8 476 24.8
Lsat_1_v5_gn_3_111681 Lactuca sativa HOM05D003229 ORTHO05D003835 7.4e-12 76.3 138 51.4
CANSAT54G2724 Cannabis sativa HOM05D003229 ORTHO05D003835 1.3e-11 75.5 177 35.0
Pp3c2_2680 Physcomitrium patens HOM05D003229 ORTHO05D003835 1.3e-11 75.5 201 30.8
Potri.016G063800 Populus trichocarpa HOM05D003229 ORTHO05D003835 1.7e-11 75.1 134 38.8
QL08p055973 Quercus lobata HOM05D006567 ORTHO05D015939 2.2e-11 74.7 71 47.9
Rhsim13G0199400 Rhododendron simsii HOM05D003229 ORTHO05D003835 2.8e-11 74.3 172 38.4
Nitab4.5_0002498g0020 Nicotiana tabacum HOM05D003229 ORTHO05D003835 1.1e-10 72.4 454 28.4
DCAR_022907 Daucus carota HOM05D003633 ORTHO05D004245 9.1e-10 69.3 319 28.2
THA.LOC104799740 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 1.2e-09 68.9 471 25.9
Os11g0575200 Oryza sativa ssp. japonica HOM05D003229 ORTHO05D003835 1.5e-09 68.6 146 41.1
AagrBONN_evm.TU.Sc2ySwM_368.3251 Anthoceros agrestis HOM05D003229 ORTHO05D003835 2.0e-09 68.2 70 45.7
Hma1.2p1_0127F.1_g059620 Hydrangea macrophylla HOM05D003229 ORTHO05D003835 2.0e-09 68.2 128 43.0
Pp3c1_33300 Physcomitrium patens HOM05D003229 ORTHO05D003835 2.0e-09 68.2 58 50.0
vmacro04054 Vaccinium macrocarpon HOM05D003229 ORTHO05D003835 2.0e-09 68.2 478 28.0
Dinv25091 Davidia involucrata HOM05D003229 ORTHO05D003835 3.5e-09 67.4 59 49.2
Sabra04G0131800 Salix brachista HOM05D003229 ORTHO05D003835 5.9e-09 66.6 216 30.1
Gohir.D13G092751 Gossypium hirsutum HOM05D003229 ORTHO05D003835 7.7e-09 66.2 156 39.1
Gorai.010G139800 Gossypium raimondii HOM05D003229 ORTHO05D003835 7.7e-09 66.2 156 39.1
Duzib128G1455 Durio zibethinus HOM05D003229 ORTHO05D003835 1.3e-08 65.5 123 27.6
Prupe.6G179900 Prunus persica HOM05D003229 ORTHO05D003835 1.7e-08 65.1 264 33.3
Gohir.D04G093700 Gossypium hirsutum HOM05D003229 ORTHO05D003835 2.2e-08 64.7 131 27.5
Gorai.009G396300 Gossypium raimondii HOM05D003229 ORTHO05D003835 2.2e-08 64.7 131 27.5
AT3G43490 Arabidopsis thaliana HOM05D003229 ORTHO05D003835 2.9e-08 64.3 159 31.4
Psat5g107520 Pisum sativum HOM05D003229 ORTHO05D003835 5.0e-08 63.5 143 47.6
QL02p079790 Quercus lobata HOM05D003229 ORTHO05D003835 5.0e-08 63.5 178 31.5
MSTRG.26568 Avicennia marina HOM05D003229 ORTHO05D003835 4.2e-07 60.5 135 35.6
A09p57240 Brassica napus HOM05D003229 ORTHO05D003835 4.7e-06 57.0 199 26.1


User provided reference genes

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