Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_026151 Vanilla planifolia HOM05D004086 ORTHO05D004641 3.9e-246 854.4 431 100.0
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 7.7e-69 265.4 434 39.2
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 2.7e-66 256.9 439 37.6
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 1.3e-63 248.1 439 37.1
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 3.7e-63 246.5 428 37.6
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 3.7e-63 246.5 412 40.3
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 8.2e-63 245.4 422 39.1
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 2.4e-62 243.8 431 38.3
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 4.1e-62 243.0 439 36.2
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 9.1e-62 241.9 437 38.0
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 9.1e-62 241.9 442 36.7
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 1.2e-61 241.5 426 36.6
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 2.6e-61 240.4 436 35.8
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 7.7e-61 238.8 439 36.4
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 1.0e-60 238.4 422 38.4
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 1.7e-60 237.7 439 36.4
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 2.9e-60 236.9 439 36.2
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 2.5e-59 233.8 433 35.8
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 4.2e-59 233.0 426 36.4
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 5.5e-59 232.6 439 36.0
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 1.6e-58 231.1 447 36.7
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 2.1e-58 230.7 431 38.3
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 2.7e-58 230.3 435 37.9
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 4.7e-58 229.6 436 36.9
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 6.1e-58 229.2 436 36.9
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 8.0e-58 228.8 431 35.0
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 1.8e-57 227.6 447 36.0
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 4.0e-57 226.5 438 37.0
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 4.0e-57 226.5 427 36.3
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 5.2e-57 226.1 435 37.0
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 6.8e-57 225.7 427 36.8
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 1.5e-56 224.6 424 35.1
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 3.4e-56 223.4 432 36.3
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 7.5e-56 222.2 358 38.0
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 2.8e-55 220.3 454 35.0
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 3.7e-55 219.9 432 34.5
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 6.3e-55 219.2 446 34.5
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 6.3e-55 219.2 434 32.9
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 8.3e-55 218.8 431 36.7
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 1.4e-54 218.0 450 34.7
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 1.8e-54 217.6 437 33.0
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 2.4e-54 217.2 440 36.6
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 3.1e-54 216.9 435 35.2
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 4.1e-54 216.5 419 36.0
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 4.1e-54 216.5 435 35.6
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 5.4e-54 216.1 424 34.0
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 5.4e-54 216.1 421 34.4
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 7.0e-54 215.7 427 33.5
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 3.5e-53 213.4 425 34.4
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 3.5e-53 213.4 438 33.3
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 5.9e-53 212.6 369 39.0
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 7.7e-53 212.2 441 35.4
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 7.7e-53 212.2 440 34.1
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 1.7e-52 211.1 458 34.5
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 6.5e-52 209.1 431 35.0
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 1.1e-51 208.4 426 36.4
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 1.5e-51 208.0 460 34.8
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 1.2e-50 204.9 432 33.8
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 1.2e-50 204.9 436 33.7
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 1.6e-50 204.5 439 34.9
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 2.1e-50 204.1 427 33.3
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 2.7e-50 203.8 436 33.7
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 4.7e-50 203.0 458 33.4
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 1.0e-49 201.8 428 33.4
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 1.8e-49 201.1 432 34.0
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 3.0e-49 200.3 418 33.0
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 3.0e-49 200.3 425 35.8
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 5.2e-49 199.5 427 34.2
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 8.8e-49 198.7 441 33.6
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 4.4e-48 196.4 436 33.5
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 5.7e-48 196.1 425 32.9
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 7.5e-48 195.7 441 34.0
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 9.8e-48 195.3 435 33.1
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 1.3e-47 194.9 451 32.2
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 1.7e-47 194.5 446 33.9
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 3.7e-47 193.4 440 33.2
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 4.9e-47 193.0 431 32.5
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 4.9e-47 193.0 383 36.0
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 6.3e-47 192.6 440 33.2
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 1.1e-46 191.8 361 36.6
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.1e-46 191.8 444 33.6
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 1.4e-46 191.4 449 33.2
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 1.6e-45 188.0 429 32.4
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 1.6e-45 188.0 432 31.7
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 2.7e-45 187.2 440 31.1
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 3.5e-45 186.8 460 32.4
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 5.9e-45 186.0 462 32.7
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 7.7e-45 185.7 444 32.4
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 1.0e-44 185.3 436 33.7
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 1.1e-43 181.8 445 32.4
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 5.5e-43 179.5 365 33.4
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 1.6e-42 177.9 434 31.3
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 1.6e-42 177.9 434 31.3
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 2.1e-42 177.6 439 32.3
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 6.1e-42 176.0 500 28.8
CDE05G2435 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.4e-41 174.9 286 38.8
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 1.8e-41 174.5 428 32.0
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 1.8e-41 174.5 445 31.5
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 2.3e-41 174.1 439 30.5
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 5.2e-41 172.9 439 30.5
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 8.9e-41 172.2 453 30.5
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 1.5e-40 171.4 435 31.0
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 2.6e-40 170.6 447 30.6
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 4.4e-40 169.9 448 29.9
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 4.4e-40 169.9 452 30.3
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 4.4e-40 169.9 377 34.2
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 5.7e-40 169.5 452 28.1
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 2.9e-39 167.2 358 33.2
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 4.1e-38 163.3 361 32.7
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 1.2e-37 161.8 374 32.6
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 1.2e-37 161.8 374 32.6
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 2.0e-37 161.0 373 32.2
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 5.0e-36 156.4 435 31.0
Nitab4.5_0004445g0020 Nicotiana tabacum HOM05D004086 ORTHO05D004641 2.5e-35 154.1 321 34.6
CARHR050710 Cardamine hirsuta HOM05D004086 ORTHO05D004641 1.5e-32 144.8 219 39.7
Sc17g0002710 Simmondsia chinensis HOM05D004086 ORTHO05D004641 9.8e-32 142.1 238 39.9
Nitab4.5_0001279g0090 Nicotiana tabacum HOM05D004086 ORTHO05D004641 2.4e-30 137.5 351 32.2
Haze_15127 Corylus avellana HOM05D004086 ORTHO05D004641 7.0e-30 136.0 357 32.5
Cpa.g.sc353.3 Carica papaya HOM05D004086 ORTHO05D004641 6.6e-28 129.4 230 38.3
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 3.1e-25 120.6 228 36.8
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 2.6e-24 117.5 426 28.2
CDE10G0302 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 3.4e-24 117.1 105 53.3
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 3.4e-24 117.1 353 31.4
Zm00001eb269020 Zea mays HOM05D004086 ORTHO05D004641 6.4e-23 112.8 174 43.7
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 3.2e-22 110.5 442 27.6
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 6.0e-21 106.3 192 38.0
Zm00001eb269010 Zea mays HOM05D004086 ORTHO05D004641 2.3e-20 104.4 188 35.6
SEGI_33702 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 5.1e-20 103.2 208 34.1
Ca_29955_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 3.3e-19 100.5 210 33.8
Haze_02100 Corylus avellana HOM05D004086 ORTHO05D004641 3.3e-19 100.5 118 45.8
PGSC0003DMG400012686 Solanum tuberosum HOM05D004086 ORTHO05D004641 4.3e-19 100.1 198 34.8
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 3.6e-18 97.1 391 26.1
CDE05G1436 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 2.9e-15 87.4 101 43.6
A02p38220 Brassica napus HOM05D004086 ORTHO05D004641 4.9e-15 86.7 189 33.3
AL253U10010 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 7.1e-14 82.8 109 43.1
BcaC03g17736 Brassica carinata HOM05D004086 ORTHO05D004641 1.3e-12 78.6 189 29.6
FAN24G1278 Fragaria x ananassa HOM05D004086 ORTHO05D004641 3.0e-12 77.4 342 27.8
SEGI_29880 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 3.9e-12 77.0 79 45.6
Cpa.g.sc353.1 Carica papaya HOM05D004086 ORTHO05D004641 9.6e-11 72.4 82 46.3
Haze_15116 Corylus avellana HOM05D004086 ORTHO05D004641 3.4e-08 63.9 103 35.9
Oeu053017.4 Olea europaea HOM05D004086 ORTHO05D004641 7.1e-06 56.2 104 38.5


User provided reference genes

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