Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_026143 Vanilla planifolia HOM05D004748 ORTHO05D005825 9.6e-267 922.9 464 100.0
Lj3g0017034 Lotus japonicus HOM05D004748 ORTHO05D005825 4.4e-171 605.1 353 82.7
Os04g0298200 Oryza sativa ssp. japonica HOM05D004748 ORTHO05D005825 3.7e-170 602.1 361 82.0
MBI14_g10723_MAGBIO Magnolia biondii HOM05D004748 ORTHO05D005825 6.4e-170 601.3 359 83.3
Gohir.D06G120700 Gossypium hirsutum HOM05D004748 ORTHO05D005825 3.2e-169 599.0 366 80.6
HanXRQChr10g0311461 Helianthus annuus HOM05D004748 ORTHO05D005825 5.4e-169 598.2 434 71.7
Gorai.010G141000 Gossypium raimondii HOM05D004748 ORTHO05D005825 7.0e-169 597.8 366 80.3
Zm00001eb086340 Zea mays HOM05D004748 ORTHO05D005825 1.2e-168 597.0 361 81.7
Gohir.A06G115900 Gossypium hirsutum HOM05D004748 ORTHO05D005825 1.6e-168 596.7 366 80.1
CiPaw.01G089000 Carya illinoinensis HOM05D004748 ORTHO05D005825 2.0e-168 596.3 362 80.1
TAR625G1093 Trochodendron aralioides HOM05D004748 ORTHO05D005825 4.6e-168 595.1 356 82.3
COL.COLO4_31191 Corchorus olitorius HOM05D004748 ORTHO05D005825 6.0e-168 594.7 365 80.3
Prupe.3G019200 Prunus persica HOM05D004748 ORTHO05D005825 6.0e-168 594.7 361 81.2
CDE04G0266 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 7.8e-168 594.3 398 76.9
CDE07G1729 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 7.8e-168 594.3 366 81.1
PGR102G1746 Punica granatum HOM05D004748 ORTHO05D005825 1.3e-167 593.6 357 83.5
Glyma.08G222000 Glycine max HOM05D004748 ORTHO05D005825 2.3e-167 592.8 358 80.2
DCAR_022622 Daucus carota HOM05D004748 ORTHO05D005825 3.9e-167 592.0 361 80.6
CANSAT01G3164 Cannabis sativa HOM05D004748 ORTHO05D005825 5.0e-167 591.7 354 81.9
Lalb_Chr04g0264641 Lupinus albus HOM05D004748 ORTHO05D005825 6.6e-167 591.3 351 82.6
MD17G1146400 Malus domestica HOM05D004748 ORTHO05D005825 1.1e-166 590.5 361 80.6
Cfa002138 Carpinus fangiana HOM05D004748 ORTHO05D005825 1.5e-166 590.1 361 80.3
Aqoxy7G02343 Aquilegia oxysepala HOM05D004748 ORTHO05D005825 1.9e-166 589.7 352 83.0
CSS0006652 Camellia sinensis var. sinensis HOM05D004748 ORTHO05D005825 3.3e-166 589.0 357 80.7
Thecc.06G061000 Theobroma cacao HOM05D004748 ORTHO05D005825 4.3e-166 588.6 366 79.5
AUR62025643 Chenopodium quinoa HOM05D004748 ORTHO05D005825 7.3e-166 587.8 362 78.7
AUR62001358 Chenopodium quinoa HOM05D004748 ORTHO05D005825 1.6e-165 586.6 363 78.5
Manes.03G081362 Manihot esculenta HOM05D004748 ORTHO05D005825 1.6e-165 586.6 428 70.6
Nn8g40686 Nelumbo nucifera HOM05D004748 ORTHO05D005825 1.6e-165 586.6 338 84.6
Actinidia31132 Actinidia chinensis HOM05D004748 ORTHO05D005825 2.8e-165 585.9 357 81.2
MD09G1160600 Malus domestica HOM05D004748 ORTHO05D005825 2.8e-165 585.9 361 80.6
QL05p082110 Quercus lobata HOM05D004748 ORTHO05D005825 2.8e-165 585.9 361 79.8
RcHm_v2.0_Chr2g0149771 Rosa chinensis HOM05D004748 ORTHO05D005825 2.8e-165 585.9 378 78.0
VMungo0647G1450 Vigna mungo HOM05D004748 ORTHO05D005825 4.7e-165 585.1 351 80.3
Eucgr.F04020 Eucalyptus grandis HOM05D004748 ORTHO05D005825 8.1e-165 584.3 364 78.8
GSVIVG01029626001 Vitis vinifera HOM05D004748 ORTHO05D005825 1.1e-164 583.9 352 81.5
ATR0580G210 Amborella trichopoda HOM05D004748 ORTHO05D005825 1.8e-164 583.2 338 84.3
Migut.I01182 Erythranthe guttata HOM05D004748 ORTHO05D005825 1.8e-164 583.2 373 77.5
PSO170G5564 Papaver somniferum HOM05D004748 ORTHO05D005825 1.8e-164 583.2 357 79.6
Phvul.008G254900 Phaseolus vulgaris HOM05D004748 ORTHO05D005825 2.3e-164 582.8 351 80.3
Potri.010G251300 Populus trichocarpa HOM05D004748 ORTHO05D005825 3.1e-164 582.4 352 81.2
Ca_20497_v3 Cicer arietinum L. HOM05D004748 ORTHO05D005825 4.0e-164 582.0 353 79.6
PSO017G2012 Papaver somniferum HOM05D004748 ORTHO05D005825 4.0e-164 582.0 352 80.4
Peaxi162Scf00207g01631 Petunia axillaris HOM05D004748 ORTHO05D005825 5.2e-164 581.6 368 78.0
Hma1.2p1_0517F.1_g170670 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 6.8e-164 581.3 339 83.2
Medtr4g008150 Medicago truncatula HOM05D004748 ORTHO05D005825 8.9e-164 580.9 360 78.3
CsaV3_7G033760 Cucumis sativus L. HOM05D004748 ORTHO05D005825 2.0e-163 579.7 352 81.0
Cc04_g00320 Coffea canephora HOM05D004748 ORTHO05D005825 2.6e-163 579.3 396 73.5
FvH4_6g37160 Fragaria vesca HOM05D004748 ORTHO05D005825 4.4e-163 578.6 365 78.9
FAN14G2305 Fragaria x ananassa HOM05D004748 ORTHO05D005825 4.4e-163 578.6 365 78.9
TPR.G15725 Trifolium pratense HOM05D004748 ORTHO05D005825 4.4e-163 578.6 353 79.9
TWI12G1435 Tripterygium wilfordii HOM05D004748 ORTHO05D005825 4.4e-163 578.6 360 78.1
Sed0019048 Sechium edule HOM05D004748 ORTHO05D005825 5.8e-163 578.2 352 80.4
THA.LOC104816897 Tarenaya hassleriana HOM05D004748 ORTHO05D005825 7.5e-163 577.8 360 77.8
EL10Ac7g18182 Beta vulgaris HOM05D004748 ORTHO05D005825 1.3e-162 577.0 363 77.7
Rhsim12G0214600 Rhododendron simsii HOM05D004748 ORTHO05D005825 2.2e-162 576.2 341 82.1
FAN09G1322 Fragaria x ananassa HOM05D004748 ORTHO05D005825 2.9e-162 575.9 365 78.4
FAN05G0392 Fragaria x ananassa HOM05D004748 ORTHO05D005825 4.9e-162 575.1 362 78.7
FAN05G2438 Fragaria x ananassa HOM05D004748 ORTHO05D005825 4.9e-162 575.1 362 78.7
PGSC0003DMG400026506 Solanum tuberosum HOM05D004748 ORTHO05D005825 1.1e-161 573.9 352 79.8
Sabra10G0195200 Salix brachista HOM05D004748 ORTHO05D005825 1.9e-161 573.2 351 80.3
Solyc06g063250.3 Solanum lycopersicum HOM05D004748 ORTHO05D005825 3.2e-161 572.4 352 79.5
Aa31LG10G3160 Aethionema arabicum HOM05D004748 ORTHO05D005825 4.1e-161 572.0 366 77.9
Sopen06g022700 Solanum pennellii HOM05D004748 ORTHO05D005825 7.1e-161 571.2 352 79.3
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 9.2e-161 570.9 351 78.6
Carub.0001s4046 Capsella rubella HOM05D004748 ORTHO05D005825 1.6e-160 570.1 362 76.8
Ah.15g094390 Amaranthus hybridus HOM05D004748 ORTHO05D005825 2.7e-160 569.3 361 77.0
Duzib192G0179 Durio zibethinus HOM05D004748 ORTHO05D005825 2.7e-160 569.3 364 78.8
CARHR041760 Cardamine hirsuta HOM05D004748 ORTHO05D005825 6.0e-160 568.2 362 76.2
ECA234G0898 Erigeron canadensis HOM05D004748 ORTHO05D005825 6.0e-160 568.2 349 80.5
Sp1g38250 Schrenkiella parvula HOM05D004748 ORTHO05D005825 6.0e-160 568.2 360 76.4
BraA06t23445Z Brassica rapa HOM05D004748 ORTHO05D005825 1.3e-159 567.0 360 76.9
BcaB07g33612 Brassica carinata HOM05D004748 ORTHO05D005825 1.7e-159 566.6 360 76.9
AL1G59520 Arabidopsis lyrata HOM05D004748 ORTHO05D005825 2.3e-159 566.2 362 76.0
BcaC08g43322 Brassica carinata HOM05D004748 ORTHO05D005825 2.3e-159 566.2 360 76.9
BolC6t35782H Brassica oleracea HOM05D004748 ORTHO05D005825 2.3e-159 566.2 360 76.9
MSTRG.10889 Avicennia marina HOM05D004748 ORTHO05D005825 3.0e-159 565.8 357 78.4
MELO3C024289.2 Cucumis melo HOM05D004748 ORTHO05D005825 5.1e-159 565.1 336 82.4
A06p02380 Brassica napus HOM05D004748 ORTHO05D005825 1.1e-158 563.9 351 78.9
C06p06730 Brassica napus HOM05D004748 ORTHO05D005825 1.1e-158 563.9 351 78.9
Lsat_1_v5_gn_5_137380 Lactuca sativa HOM05D004748 ORTHO05D005825 1.1e-158 563.9 402 72.4
AT1G51610 Arabidopsis thaliana HOM05D004748 ORTHO05D005825 2.5e-158 562.8 361 75.9
SHI31092 Sapria himalayana HOM05D004748 ORTHO05D005825 2.8e-157 559.3 338 81.1
BcaC08g43922 Brassica carinata HOM05D004748 ORTHO05D005825 6.8e-156 554.7 353 76.8
BolC6t36471H Brassica oleracea HOM05D004748 ORTHO05D005825 6.8e-156 554.7 353 76.8
SGA_v2.0_scaffold71G24004 Striga asiatica HOM05D004748 ORTHO05D005825 5.8e-155 551.6 338 81.4
BcaB02g11258 Brassica carinata HOM05D004748 ORTHO05D005825 2.9e-154 549.3 359 74.9
BraA05t20854Z Brassica rapa HOM05D004748 ORTHO05D005825 4.9e-154 548.5 362 74.0
A05p19500 Brassica napus HOM05D004748 ORTHO05D005825 4.1e-153 545.4 340 77.6
arahy.Tifrunner.gnm1.ann1.660VQ8 Arachis hypogaea HOM05D004748 ORTHO05D005825 1.0e-151 540.8 389 71.7
Atru.chr1.2705 Acer truncatum HOM05D004748 ORTHO05D005825 1.5e-150 537.0 364 73.1
Hund18602 Selenicereus undatus HOM05D004748 ORTHO05D005825 7.3e-150 534.6 455 61.3
Ciclev10025586m.g Citrus clementina HOM05D004748 ORTHO05D005825 4.7e-149 531.9 329 79.3
arahy.Tifrunner.gnm1.ann1.2A2X48 Arachis hypogaea HOM05D004748 ORTHO05D005825 8.9e-148 527.7 353 75.4
CAN.G308.5 Capsicum annuum HOM05D004748 ORTHO05D005825 3.5e-144 515.8 308 81.8
Nitab4.5_0003757g0030 Nicotiana tabacum HOM05D004748 ORTHO05D005825 8.7e-143 511.1 312 80.8
Nitab4.5_0001691g0140 Nicotiana tabacum HOM05D004748 ORTHO05D005825 7.3e-142 508.1 363 70.5
Oeu001810.2 Olea europaea HOM05D004748 ORTHO05D005825 2.8e-141 506.1 293 83.6
Lj5A24T50 Lonicera japonica HOM05D004748 ORTHO05D005825 6.2e-141 505.0 327 77.7
Duzib235G0633 Durio zibethinus HOM05D004748 ORTHO05D005825 1.8e-140 503.4 366 70.2
Mapoly0185s0006 Marchantia polymorpha HOM05D004748 ORTHO05D005825 3.1e-140 502.7 366 68.9
Hund05683 Selenicereus undatus HOM05D004748 ORTHO05D005825 4.0e-140 502.3 354 69.2
SMO228G0169 Selaginella moellendorffii HOM05D004748 ORTHO05D005825 5.3e-140 501.9 338 73.4
Psat7g261000 Pisum sativum HOM05D004748 ORTHO05D005825 5.8e-139 498.4 295 82.0
Lj9C541G21 Lonicera japonica HOM05D004748 ORTHO05D001811 1.7e-138 496.9 426 62.4
AagrBONN_evm.TU.Sc2ySwM_344.1578 Anthoceros agrestis HOM05D004748 ORTHO05D005825 1.1e-137 494.2 338 71.3
Peaxi162Scf00038g02524 Petunia axillaris HOM05D004748 ORTHO05D005825 1.1e-137 494.2 307 77.9
ClCG09G001570 Citrullus lanatus HOM05D004748 ORTHO05D005825 1.6e-136 490.3 352 71.9
Pp3c20_1650 Physcomitrium patens HOM05D004748 ORTHO05D005825 5.6e-134 481.9 406 62.3
Hma1.2p1_0517F.1_g170660 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 6.4e-130 468.4 278 82.7
Nitab4.5_0012506g0020 Nicotiana tabacum HOM05D004748 ORTHO05D005825 2.5e-126 456.4 335 68.1
Glyma.07G020100 Glycine max HOM05D004748 ORTHO05D005825 8.1e-125 451.4 264 84.1
Zm00001eb420390 Zea mays HOM05D004748 ORTHO05D005825 4.2e-121 439.1 267 81.3
Dinv20350 Davidia involucrata HOM05D004748 ORTHO05D005825 1.8e-119 433.7 264 82.6
Nitab4.5_0002661g0120 Nicotiana tabacum HOM05D004748 ORTHO05D005825 1.6e-117 427.2 350 64.3
SEGI_05538 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 5.9e-115 418.7 251 81.7
Sc12g0011080 Simmondsia chinensis HOM05D004748 ORTHO05D005825 2.1e-112 410.2 259 77.6
Thhalv10011469m.g Eutrema salsugineum HOM05D004748 ORTHO05D005825 1.5e-110 404.1 274 73.7
vmacro17059 Vaccinium macrocarpon HOM05D004748 ORTHO05D005825 1.5e-94 350.9 206 84.5
Haze_16292 Corylus avellana HOM05D004748 ORTHO05D005825 4.4e-78 296.2 184 79.3
Cpa.g.sc67.6 Carica papaya HOM05D004748 ORTHO05D005825 1.1e-76 291.6 180 80.6
Cre06.g289150 Chlamydomonas reinhardtii HOM05D004748 ORTHO05D005825 1.4e-76 291.2 346 44.2
C06p13150 Brassica napus HOM05D004748 ORTHO05D005825 5.9e-75 285.8 182 75.3
MCO14G368 Micromonas commoda HOM05D004748 ORTHO05D005825 6.1e-72 275.8 335 43.3
FAN02G4052 Fragaria x ananassa HOM05D004748 ORTHO05D005825 2.7e-59 233.8 143 77.6
BcaB04g17188 Brassica carinata HOM05D001232 ORTHO05D001073 3.9e-58 229.9 424 38.9
FAN02G0724 Fragaria x ananassa HOM05D004748 ORTHO05D005825 8.6e-58 228.8 132 84.1
Haze_26513 Corylus avellana HOM05D004748 ORTHO05D005825 9.5e-57 225.3 335 34.6
PRCOL_00004355 Prasinoderma coloniale HOM05D004748 ORTHO05D005825 2.0e-51 207.6 372 37.4
Cpa.g.sc67.3 Carica papaya HOM05D004748 ORTHO05D005825 1.0e-50 205.3 123 75.6
Actinidia00640 Actinidia chinensis HOM05D004748 ORTHO05D005825 2.3e-39 167.5 103 76.7
Actinidia00641 Actinidia chinensis HOM05D004748 ORTHO05D005825 9.2e-36 155.6 109 73.4
CARHR041770 Cardamine hirsuta HOM05D004748 ORTHO05D005825 2.9e-29 134.0 131 53.4
Haze_16294 Corylus avellana HOM05D004748 ORTHO05D005825 8.4e-29 132.5 84 78.6
SEGI_05879 Sequoiadendron giganteum HOM05D004748 ORTHO05D002681 1.3e-26 125.2 101 63.4
GSVIVG01029613001 Vitis vinifera HOM05D004748 ORTHO05D005825 2.3e-26 124.4 83 75.9
FAN05G1723 Fragaria x ananassa HOM05D000043 ORTHO05D001551 6.6e-26 122.9 82 70.7
SEGI_34839 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 9.6e-25 119.0 78 69.2
GSVIVG01029603001 Vitis vinifera HOM05D004748 ORTHO05D005825 8.1e-24 115.9 65 84.6
BcaC03g16763 Brassica carinata HOM05D004748 ORTHO05D005825 3.1e-23 114.0 75 72.0
C02p46400 Brassica napus HOM05D004748 ORTHO05D005825 3.1e-23 114.0 75 72.0
BolC2t10691H Brassica oleracea HOM05D004748 ORTHO05D005825 3.1e-23 114.0 75 72.0
Haze_16297 Corylus avellana HOM05D004748 ORTHO05D005825 6.9e-23 112.8 104 56.7
CAN.G126.34 Capsicum annuum HOM05D004748 ORTHO05D005825 2.0e-22 111.3 125 47.2
A04p28800 Brassica napus HOM05D004748 ORTHO05D005825 1.3e-21 108.6 75 68.0
BraA08t33859Z Brassica rapa HOM05D004748 ORTHO05D005825 1.3e-21 108.6 75 68.0
BraA04t18357Z Brassica rapa HOM05D004748 ORTHO05D005825 2.9e-21 107.5 75 68.0
RcHm_v2.0_Chr1g0341791 Rosa chinensis HOM05D004748 ORTHO05D005825 7.4e-17 92.8 64 68.8
arahy.Tifrunner.gnm1.ann1.W4KKVA Arachis hypogaea HOM05D005785 ORTHO05D007962 4.9e-13 80.1 85 54.1
RcHm_v2.0_Chr7g0197681 Rosa chinensis HOM05D004748 ORTHO05D005825 4.9e-13 80.1 54 74.1
A10p03860 Brassica napus HOM05D004748 ORTHO05D005825 1.1e-12 79.0 82 51.2
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 5.6e-09 66.6 35 85.7
BraA10t42660Z Brassica rapa HOM05D004748 ORTHO05D005825 7.4e-09 66.2 74 48.6
GSVIVG01029622001 Vitis vinifera HOM05D004748 ORTHO05D005825 9.6e-09 65.9 36 86.1
HanXRQChr12g0383231 Helianthus annuus HOM05D002835 ORTHO05D003008 1.6e-08 65.1 56 57.1
SEGI_11704 Sequoiadendron giganteum HOM05D004748 ORTHO05D006250 8.2e-08 62.8 37 75.7
FAN03G2435 Fragaria x ananassa HOM05D000153 ORTHO05D000118 4.0e-07 60.5 38 71.1


User provided reference genes

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