Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_026089 Vanilla planifolia HOM05D003756 ORTHO05D004304 3.5e-35 151.0 72 100.0
HPP92_025135 Vanilla planifolia HOM05D003756 ORTHO05D004304 2.3e-34 148.3 72 98.6
Ah.15g090880 Amaranthus hybridus HOM05D003756 ORTHO05D004304 1.0e-29 132.9 71 85.9
AUR62006180 Chenopodium quinoa HOM05D003756 ORTHO05D004304 8.4e-29 129.8 72 84.7
AUR62028527 Chenopodium quinoa HOM05D003756 ORTHO05D004304 8.4e-29 129.8 72 84.7
arahy.Tifrunner.gnm1.ann1.IH6TUL Arachis hypogaea HOM05D003756 ORTHO05D004304 3.2e-28 127.9 71 84.5
ClCG04G010070 Citrullus lanatus HOM05D003756 ORTHO05D004304 5.5e-28 127.1 71 81.7
Eucgr.K02043 Eucalyptus grandis HOM05D003756 ORTHO05D004304 5.5e-28 127.1 71 80.3
Sc20g0006280 Simmondsia chinensis HOM05D003756 ORTHO05D004304 5.5e-28 127.1 71 80.3
CSS0028702 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 7.1e-28 126.7 72 81.9
Oeu002376.1 Olea europaea HOM05D003756 ORTHO05D004304 7.1e-28 126.7 72 80.6
CiPaw.10G009500 Carya illinoinensis HOM05D003756 ORTHO05D004304 9.3e-28 126.3 71 78.9
Cpa.g.sc5.21 Carica papaya HOM05D003756 ORTHO05D004304 1.6e-27 125.6 71 78.9
ClCG04G010050 Citrullus lanatus HOM05D003756 ORTHO05D004304 2.1e-27 125.2 71 81.7
Nn6g34903 Nelumbo nucifera HOM05D003756 ORTHO05D004304 2.1e-27 125.2 71 81.7
CiPaw.09G013700 Carya illinoinensis HOM05D003756 ORTHO05D004304 3.5e-27 124.4 71 80.3
Manes.08G025100 Manihot esculenta HOM05D003756 ORTHO05D004304 3.5e-27 124.4 71 83.1
Potri.004G188700 Populus trichocarpa HOM05D003756 ORTHO05D004304 3.5e-27 124.4 72 80.6
MD12G1036000 Malus domestica HOM05D003756 ORTHO05D004304 4.6e-27 124.0 71 80.3
FAN05G1127 Fragaria x ananassa HOM05D003756 ORTHO05D004304 6.0e-27 123.6 69 82.6
FAN05G3155 Fragaria x ananassa HOM05D003756 ORTHO05D004304 6.0e-27 123.6 69 82.6
FAN09G2235 Fragaria x ananassa HOM05D003756 ORTHO05D004304 6.0e-27 123.6 69 82.6
Duzib128G1348 Durio zibethinus HOM05D003756 ORTHO05D004304 7.9e-27 123.2 72 80.6
Gohir.A09G139300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 7.9e-27 123.2 69 82.6
Gohir.D09G135300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 7.9e-27 123.2 69 82.6
Gorai.006G155200 Gossypium raimondii HOM05D003756 ORTHO05D004304 7.9e-27 123.2 69 82.6
Duzib106G1642 Durio zibethinus HOM05D003756 ORTHO05D004304 1.0e-26 122.9 72 81.9
FvH4_6g18660 Fragaria vesca HOM05D003756 ORTHO05D004304 1.0e-26 122.9 66 84.8
FAN14G1823 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.0e-26 122.9 66 84.8
CANSAT80G0977 Cannabis sativa HOM05D003756 ORTHO05D004304 1.3e-26 122.5 71 76.1
Cc01_g09260 Coffea canephora HOM05D003756 ORTHO05D004304 1.3e-26 122.5 70 80.0
Gohir.D01G127900 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.3e-26 122.5 72 79.2
Gorai.002G158500 Gossypium raimondii HOM05D003756 ORTHO05D004304 1.3e-26 122.5 72 79.2
MD14G1022700 Malus domestica HOM05D003756 ORTHO05D004304 1.3e-26 122.5 71 78.9
Prupe.7G110400 Prunus persica HOM05D003756 ORTHO05D004304 1.3e-26 122.5 71 78.9
Sed0019143 Sechium edule HOM05D003756 ORTHO05D004304 1.3e-26 122.5 72 77.8
Phvul.001G190200 Phaseolus vulgaris HOM05D003756 ORTHO05D004304 1.8e-26 122.1 72 79.2
FvH4_5g38790 Fragaria vesca HOM05D003756 ORTHO05D004304 2.3e-26 121.7 71 77.5
FAN02G3109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.3e-26 121.7 69 81.2
Glyma.13G153500 Glycine max HOM05D003756 ORTHO05D004304 2.3e-26 121.7 72 77.8
Lsat_1_v5_gn_1_59380 Lactuca sativa HOM05D003756 ORTHO05D004304 2.3e-26 121.7 72 80.6
MD15G1359000 Malus domestica HOM05D003756 ORTHO05D004304 3.0e-26 121.3 71 77.5
Thecc.05G088800 Theobroma cacao HOM05D003756 ORTHO05D004304 3.0e-26 121.3 65 84.6
TAR636G3345 Trochodendron aralioides HOM05D003756 ORTHO05D004304 3.0e-26 121.3 72 77.8
GSVIVG01033840001 Vitis vinifera HOM05D003756 ORTHO05D004304 3.0e-26 121.3 72 79.2
Ah.08g210600 Amaranthus hybridus HOM05D001616 ORTHO05D003701 3.9e-26 120.9 95 65.3
Glyma.03G195700 Glycine max HOM05D003756 ORTHO05D004304 3.9e-26 120.9 72 79.2
Gohir.A01G206400 Gossypium hirsutum HOM05D003756 ORTHO05D004304 3.9e-26 120.9 71 78.9
Gorai.002G240000 Gossypium raimondii HOM05D003756 ORTHO05D004304 3.9e-26 120.9 71 78.9
Lsat_1_v5_gn_6_38741 Lactuca sativa HOM05D003756 ORTHO05D004304 3.9e-26 120.9 72 80.6
Prupe.1G506800 Prunus persica HOM05D003756 ORTHO05D004304 3.9e-26 120.9 71 77.5
Sabra04G0129400 Salix brachista HOM05D003756 ORTHO05D004304 3.9e-26 120.9 72 79.2
Actinidia35464 Actinidia chinensis HOM05D003756 ORTHO05D004304 5.1e-26 120.6 72 80.6
FAN04G2492 Fragaria x ananassa HOM05D003756 ORTHO05D004304 5.1e-26 120.6 68 80.9
TAR623G0741 Trochodendron aralioides HOM05D003756 ORTHO05D004304 5.1e-26 120.6 71 78.9
ClCG10G018980 Citrullus lanatus HOM05D003756 ORTHO05D004304 6.7e-26 120.2 71 77.5
HanXRQChr01g0024081 Helianthus annuus HOM05D003756 ORTHO05D004304 6.7e-26 120.2 71 78.9
Gohir.A01G138200 Gossypium hirsutum HOM05D003756 ORTHO05D004304 8.7e-26 119.8 72 76.4
Potri.009G149300 Populus trichocarpa HOM05D003756 ORTHO05D004304 8.7e-26 119.8 71 74.6
Atru.chr8.1542 Acer truncatum HOM05D003756 ORTHO05D004304 1.1e-25 119.4 71 80.3
Gohir.D01G195800 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.1e-25 119.4 71 77.5
Psat3g033400 Pisum sativum HOM05D003756 ORTHO05D004304 1.5e-25 119.0 68 80.9
Lj6g0015332 Lotus japonicus HOM05D003756 ORTHO05D004304 1.9e-25 118.6 71 77.5
Actinidia24215 Actinidia chinensis HOM05D003756 ORTHO05D004304 2.5e-25 118.2 72 80.6
MELO3C024548.2 Cucumis melo HOM05D003756 ORTHO05D004304 2.5e-25 118.2 71 77.5
THA.LOC104804928 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 2.5e-25 118.2 71 77.5
CSS0017737 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 3.3e-25 117.9 72 77.8
CSS0036255 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 3.3e-25 117.9 72 77.8
Ca_09004_v3 Cicer arietinum L. HOM05D003756 ORTHO05D004304 3.3e-25 117.9 68 79.4
HanXRQChr02g0054771 Helianthus annuus HOM05D003756 ORTHO05D004304 3.3e-25 117.9 70 77.1
Lalb_Chr20g0111721 Lupinus albus HOM05D003756 ORTHO05D004304 3.3e-25 117.9 73 75.3
MBI17_g08353_MAGBIO Magnolia biondii HOM05D003756 ORTHO05D004304 3.3e-25 117.9 69 79.7
Aqoxy2G03946 Aquilegia oxysepala HOM05D003756 ORTHO05D004304 4.3e-25 117.5 72 77.8
ECA233G1974 Erigeron canadensis HOM05D003756 ORTHO05D004304 4.3e-25 117.5 70 78.6
Medtr7g104570 Medicago truncatula HOM05D003756 ORTHO05D004304 4.3e-25 117.5 68 80.9
RcHm_v2.0_Chr3g0473621 Rosa chinensis HOM05D003756 ORTHO05D004304 4.3e-25 117.5 71 76.1
Sed0014276 Sechium edule HOM05D003756 ORTHO05D004304 4.3e-25 117.5 71 74.6
Atru.chr8.1539 Acer truncatum HOM05D003756 ORTHO05D004304 7.4e-25 116.7 71 77.5
FAN18G4123 Fragaria x ananassa HOM05D003756 ORTHO05D004304 9.6e-25 116.3 74 74.3
QL07p038800 Quercus lobata HOM05D003756 ORTHO05D004304 9.6e-25 116.3 73 76.7
QL07p039050 Quercus lobata HOM05D003756 ORTHO05D004304 9.6e-25 116.3 73 76.7
ECA248G1642 Erigeron canadensis HOM05D003756 ORTHO05D004304 1.3e-24 115.9 69 75.4
unitig_747.g21944 Utricularia gibba HOM05D003756 ORTHO05D004304 1.3e-24 115.9 71 76.1
CDE06G0646 Ceratophyllum demersum HOM05D003756 ORTHO05D004304 2.1e-24 115.2 71 76.1
MD07G1149900 Malus domestica HOM05D003756 ORTHO05D004304 2.1e-24 115.2 71 76.1
Peaxi162Scf00003g00522 Petunia axillaris HOM05D003756 ORTHO05D004304 2.1e-24 115.2 69 79.7
THA.LOC104799762 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 2.1e-24 115.2 71 76.1
arahy.Tifrunner.gnm1.ann1.N59HKK Arachis hypogaea HOM05D003756 ORTHO05D004304 2.8e-24 114.8 93 63.4
Cfa016605 Carpinus fangiana HOM05D003756 ORTHO05D004304 2.8e-24 114.8 72 75.0
Haze_19608 Corylus avellana HOM05D003756 ORTHO05D004304 2.8e-24 114.8 72 75.0
Lalb_Chr25g0288331 Lupinus albus HOM05D003756 ORTHO05D004304 2.8e-24 114.8 65 78.5
MELO3C009472.2 Cucumis melo HOM05D003756 ORTHO05D004304 3.7e-24 114.4 71 74.6
CsaV3_3G037270 Cucumis sativus L. HOM05D003756 ORTHO05D004304 3.7e-24 114.4 71 74.6
Nitab4.5_0000755g0180 Nicotiana tabacum HOM05D003756 ORTHO05D004304 3.7e-24 114.4 73 76.7
Actinidia07248 Actinidia chinensis HOM05D003756 ORTHO05D004304 4.8e-24 114.0 72 76.4
Dinv42555 Davidia involucrata HOM05D003756 ORTHO05D004304 4.8e-24 114.0 72 76.4
PGR142G3329 Punica granatum HOM05D003756 ORTHO05D004304 4.8e-24 114.0 71 73.2
PGSC0003DMG400005923 Solanum tuberosum HOM05D003756 ORTHO05D004304 4.8e-24 114.0 66 80.3
CAN.G919.30 Capsicum annuum HOM05D003756 ORTHO05D004304 8.2e-24 113.2 62 80.6
TWI74G1420 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 1.4e-23 112.5 69 71.0
AL5G33490 Arabidopsis lyrata HOM05D003756 ORTHO05D004304 1.8e-23 112.1 71 71.8
AT3G52730 Arabidopsis thaliana HOM05D003756 ORTHO05D004304 1.8e-23 112.1 71 71.8
Carub.0005s1918 Capsella rubella HOM05D003756 ORTHO05D004304 1.8e-23 112.1 71 71.8
CARHR162600 Cardamine hirsuta HOM05D003756 ORTHO05D004304 1.8e-23 112.1 71 71.8
THA.LOC104823490 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 2.4e-23 111.7 71 71.8
TAR633G1678 Trochodendron aralioides HOM05D003756 ORTHO05D004304 5.3e-23 110.5 99 57.6
Glyma.19G194915 Glycine max HOM05D003756 ORTHO05D004304 9.0e-23 109.8 101 58.4
Nitab4.5_0001216g0110 Nicotiana tabacum HOM05D003756 ORTHO05D004304 1.2e-22 109.4 91 63.7
Aa31LG5G21370 Aethionema arabicum HOM05D003756 ORTHO05D004304 1.5e-22 109.0 69 71.0
Os05g0400400 Oryza sativa ssp. japonica HOM05D003756 ORTHO05D004304 1.5e-22 109.0 62 75.8
CAN.G1039.16 Capsicum annuum HOM05D003756 ORTHO05D004304 2.0e-22 108.6 71 69.0
SalBow5G5426 Salvia bowleyana HOM05D003756 ORTHO05D004304 2.0e-22 108.6 71 67.6
RcHm_v2.0_Chr7g0240771 Rosa chinensis HOM05D003756 ORTHO05D004304 2.6e-22 108.2 71 66.2
Zm00001eb093400 Zea mays HOM05D003756 ORTHO05D004304 5.8e-22 107.1 61 75.4
Thhalv10010889m.g Eutrema salsugineum HOM05D003756 ORTHO05D004304 1.7e-21 105.5 62 77.4
HanXRQChr14g0451601 Helianthus annuus HOM05D003756 ORTHO05D004304 2.9e-21 104.8 72 72.2
Solyc11g068400.2 Solanum lycopersicum HOM05D003756 ORTHO05D004304 2.9e-21 104.8 68 72.1
Sopen11g027120 Solanum pennellii HOM05D003756 ORTHO05D004304 2.9e-21 104.8 68 72.1
Nitab4.5_0000132g0030 Nicotiana tabacum HOM05D003756 ORTHO05D004304 3.8e-21 104.4 81 64.2
EL10Ac7g16918 Beta vulgaris HOM05D003756 ORTHO05D004304 5.0e-21 104.0 57 80.7
CAN.G1358.12 Capsicum annuum HOM05D003756 ORTHO05D004304 6.5e-21 103.6 69 73.9
Hund19934 Selenicereus undatus HOM05D003756 ORTHO05D004304 6.5e-21 103.6 56 80.4
Migut.D02449 Erythranthe guttata HOM05D003756 ORTHO05D004304 8.4e-21 103.2 67 67.2
MD16G1126500 Malus domestica HOM05D003756 ORTHO05D004304 8.4e-21 103.2 64 73.4
BcaB02g07820 Brassica carinata HOM05D003756 ORTHO05D004304 1.4e-20 102.4 62 74.2
Zm00001eb196190 Zea mays HOM05D003756 ORTHO05D004304 1.4e-20 102.4 61 73.8
BcaB02g08557 Brassica carinata HOM05D003756 ORTHO05D004304 1.9e-20 102.1 62 74.2
BcaC02g09226 Brassica carinata HOM05D003756 ORTHO05D004304 1.9e-20 102.1 62 74.2
C04p40240 Brassica napus HOM05D003756 ORTHO05D004304 1.9e-20 102.1 62 74.2
BolC4t25600H Brassica oleracea HOM05D003756 ORTHO05D004304 1.9e-20 102.1 62 74.2
CAN.G2235.1 Capsicum annuum HOM05D003756 ORTHO05D004304 1.9e-20 102.1 69 72.5
Sp5g09600 Schrenkiella parvula HOM05D003756 ORTHO05D004304 1.9e-20 102.1 62 74.2
TWI53G0293 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 1.9e-20 102.1 77 62.3
BcaB01g00346 Brassica carinata HOM05D003756 ORTHO05D004304 2.5e-20 101.7 58 79.3
BcaC07g39638 Brassica carinata HOM05D003756 ORTHO05D004304 2.5e-20 101.7 58 79.3
A04p06750 Brassica napus HOM05D003756 ORTHO05D004304 2.5e-20 101.7 62 72.6
A09p45820 Brassica napus HOM05D003756 ORTHO05D004304 2.5e-20 101.7 58 79.3
C08p28010 Brassica napus HOM05D003756 ORTHO05D004304 2.5e-20 101.7 58 79.3
BolC8t50413H Brassica oleracea HOM05D003756 ORTHO05D004304 2.5e-20 101.7 58 79.3
BraA09t40043Z Brassica rapa HOM05D003756 ORTHO05D004304 2.5e-20 101.7 58 79.3
Oeu035551.2 Olea europaea HOM05D003756 ORTHO05D004304 3.2e-20 101.3 56 82.1
SEGI_29748 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 5.5e-20 100.5 58 74.1
Nitab4.5_0006996g0050 Nicotiana tabacum HOM05D003756 ORTHO05D004304 1.2e-19 99.4 56 82.1
Sc02g0000240 Simmondsia chinensis HOM05D003756 ORTHO05D004304 1.6e-19 99.0 56 78.6
Actinidia37081 Actinidia chinensis HOM05D003756 ORTHO05D004304 7.9e-19 96.7 56 82.1
ECA238G2045 Erigeron canadensis HOM05D003756 ORTHO05D004304 1.8e-18 95.5 66 68.2
Sabra09G0117900 Salix brachista HOM05D003756 ORTHO05D004304 3.9e-18 94.4 56 75.0
COL.COLO4_29737 Corchorus olitorius HOM05D003756 ORTHO05D004304 5.1e-18 94.0 66 66.7
Rhsim13G0111400 Rhododendron simsii HOM05D003756 ORTHO05D004304 6.7e-18 93.6 90 53.3
Ciclev10013189m.g Citrus clementina HOM05D003756 ORTHO05D004304 8.7e-18 93.2 56 76.8
CsaV3_6G040700 Cucumis sativus L. HOM05D003756 ORTHO05D004304 1.1e-17 92.8 56 75.0
Mapoly0074s0034 Marchantia polymorpha HOM05D003756 ORTHO05D004304 1.5e-17 92.4 66 63.6
TPR.G19525 Trifolium pratense HOM05D003756 ORTHO05D004304 1.5e-17 92.4 56 75.0
Duzib093G1183 Durio zibethinus HOM05D003756 ORTHO05D004304 1.9e-17 92.0 57 75.4
Dinv29482 Davidia involucrata HOM05D003756 ORTHO05D004304 2.5e-17 91.7 56 76.8
PSO339G6416 Papaver somniferum HOM05D003756 ORTHO05D004304 4.3e-17 90.9 61 67.2
PSO384G4395 Papaver somniferum HOM05D003756 ORTHO05D004304 4.3e-17 90.9 61 67.2
Rhsim01G0205100 Rhododendron simsii HOM05D003756 ORTHO05D004304 7.4e-17 90.1 125 42.4
Hma1.2p1_0578F.1_g182500 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 9.7e-17 89.7 56 76.8
PGSC0003DMG400026342 Solanum tuberosum HOM05D003756 ORTHO05D004304 2.2e-16 88.6 65 63.1
CAN.G28765.1 Capsicum annuum HOM05D003756 ORTHO05D004304 3.7e-16 87.8 67 65.7
Nitab4.5_0000963g0100 Nicotiana tabacum HOM05D003756 ORTHO05D004304 8.2e-16 86.7 56 67.9
Sp4g18470 Schrenkiella parvula HOM05D003756 ORTHO05D004304 1.4e-15 85.9 56 67.9
Pp3c7_2560 Physcomitrium patens HOM05D003756 ORTHO05D004304 1.8e-15 85.5 51 66.7
ATR0796G241 Amborella trichopoda HOM05D003756 ORTHO05D004304 5.3e-15 84.0 48 77.1
Pp3c11_23610 Physcomitrium patens HOM05D003756 ORTHO05D004304 1.5e-14 82.4 54 59.3
SalBow6G3312 Salvia bowleyana HOM05D003756 ORTHO05D004304 1.5e-14 82.4 56 60.7
Hma1.2p1_0084F.1_g043780 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 2.0e-14 82.0 56 67.9
CBR_g21065 Chara braunii HOM05D003756 ORTHO05D004304 4.5e-14 80.9 61 59.0
BraA04t16378Z Brassica rapa HOM05D003756 ORTHO05D004304 1.0e-13 79.7 50 68.0
MELO3C032936.2 Cucumis melo HOM05D003756 ORTHO05D004304 1.3e-13 79.3 40 85.0
FAN13G0109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.3e-13 79.3 55 63.6
SEGI_32530 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 2.9e-13 78.2 52 67.3
FAN13G3094 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.5e-12 75.1 46 76.1
PSO478G0414 Papaver somniferum HOM05D003756 ORTHO05D004304 2.5e-12 75.1 55 56.4
Dinv33579 Davidia involucrata HOM05D003756 ORTHO05D004304 3.6e-11 71.2 38 78.9
FAN04G1204 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.0e-10 68.2 55 58.2
FAN04G2029 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.0e-10 68.2 55 58.2
FAN21G3678 Fragaria x ananassa HOM05D002333 ORTHO05D004304 8.8e-10 66.6 38 81.6
Nn2g14157 Nelumbo nucifera HOM05D003756 ORTHO05D004304 2.0e-09 65.5 32 87.5
RcHm_v2.0_Chr7g0240761 Rosa chinensis HOM05D003756 ORTHO05D004304 4.3e-09 64.3 41 70.7
MCO16G664 Micromonas commoda HOM05D003756 ORTHO05D004304 2.4e-07 58.5 51 51.0
Aa31LG10G7740 Aethionema arabicum HOM05D003756 ORTHO05D004304 3.1e-07 58.2 40 65.0
PRCOL_00006894 Prasinoderma coloniale HOM05D003756 ORTHO05D004304 2.0e-06 55.5 52 50.0


User provided reference genes

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