Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_026026 Vanilla planifolia HOM05D005146 ORTHO05D006752 1.7e-140 502.7 249 100.0
HPP92_027733 Vanilla planifolia HOM05D005146 ORTHO05D006752 2.0e-138 495.7 248 98.8
Cc10_g01800 Coffea canephora HOM05D005146 ORTHO05D006752 1.1e-112 410.2 246 78.5
Migut.N03153 Erythranthe guttata HOM05D005146 ORTHO05D006752 2.5e-112 409.1 245 79.2
Gohir.D08G020900 Gossypium hirsutum HOM05D005146 ORTHO05D006752 3.2e-112 408.7 246 78.0
PGR083G0855 Punica granatum HOM05D005146 ORTHO05D006752 2.8e-111 405.6 246 77.6
Thecc.09G245400 Theobroma cacao HOM05D005146 ORTHO05D006752 8.0e-111 404.1 247 77.7
Gohir.A08G010500 Gossypium hirsutum HOM05D005146 ORTHO05D006752 1.4e-110 403.3 246 77.6
DCAR_009928 Daucus carota HOM05D005146 ORTHO05D006752 1.8e-110 402.9 245 76.7
Nn6g32362 Nelumbo nucifera HOM05D005146 ORTHO05D006752 1.8e-110 402.9 246 77.6
CiPaw.07G151400 Carya illinoinensis HOM05D005146 ORTHO05D006752 6.8e-110 401.0 246 78.0
HanXRQChr06g0183611 Helianthus annuus HOM05D005146 ORTHO05D006752 6.8e-110 401.0 245 76.3
SGA_v2.0_scaffold12G05971 Striga asiatica HOM05D005146 ORTHO05D006752 6.8e-110 401.0 244 78.3
CAN.G311.14 Capsicum annuum HOM05D005146 ORTHO05D006752 8.8e-110 400.6 243 79.0
PSO700G0287 Papaver somniferum HOM05D005146 ORTHO05D006752 1.5e-109 399.8 246 77.2
Potri.002G023700 Populus trichocarpa HOM05D005146 ORTHO05D006752 1.5e-109 399.8 247 77.3
SalBow3G2629 Salvia bowleyana HOM05D005146 ORTHO05D006752 1.5e-109 399.8 242 76.0
QL02p011373 Quercus lobata HOM05D005146 ORTHO05D006752 2.0e-109 399.4 247 76.5
PGSC0003DMG400003775 Solanum tuberosum HOM05D005146 ORTHO05D006752 3.4e-109 398.7 243 78.6
Cpa.g.sc1059.3 Carica papaya HOM05D005146 ORTHO05D006752 5.7e-109 397.9 247 76.5
TWI56G0936 Tripterygium wilfordii HOM05D005146 ORTHO05D006752 7.5e-109 397.5 246 76.4
GSVIVG01009887001 Vitis vinifera HOM05D005146 ORTHO05D006752 9.8e-109 397.1 246 77.2
Actinidia15413 Actinidia chinensis HOM05D005146 ORTHO05D006752 1.3e-108 396.7 244 77.5
Nitab4.5_0001540g0020 Nicotiana tabacum HOM05D005146 ORTHO05D006752 1.3e-108 396.7 243 79.0
Sabra02G0019300 Salix brachista HOM05D005146 ORTHO05D006752 1.3e-108 396.7 247 76.5
PSO170G4907 Papaver somniferum HOM05D005146 ORTHO05D006752 2.8e-108 395.6 242 77.7
ECA238G2776 Erigeron canadensis HOM05D005146 ORTHO05D006752 3.7e-108 395.2 245 75.5
ATR0797G002 Amborella trichopoda HOM05D005146 ORTHO05D006752 1.1e-107 393.7 247 76.5
Dinv31832 Davidia involucrata HOM05D005146 ORTHO05D006752 1.1e-107 393.7 243 77.4
Hund05199 Selenicereus undatus HOM05D005146 ORTHO05D006752 1.1e-107 393.7 247 74.5
Lsat_1_v5_gn_2_8601 Lactuca sativa HOM05D005146 ORTHO05D006752 1.4e-107 393.3 245 75.9
Medtr3g113750 Medicago truncatula HOM05D005146 ORTHO05D006752 1.8e-107 392.9 246 76.0
Rhsim06G0022400 Rhododendron simsii HOM05D005146 ORTHO05D006752 1.8e-107 392.9 243 77.0
Solyc04g081310.3 Solanum lycopersicum HOM05D005146 ORTHO05D006752 1.8e-107 392.9 243 77.8
Sopen04g034930 Solanum pennellii HOM05D005146 ORTHO05D006752 1.8e-107 392.9 243 77.8
Manes.11G065850 Manihot esculenta HOM05D005146 ORTHO05D006752 2.4e-107 392.5 247 76.1
Manes.05G148600 Manihot esculenta HOM05D005146 ORTHO05D006752 3.1e-107 392.1 247 75.7
Ciclev10002090m.g Citrus clementina HOM05D005146 ORTHO05D006752 4.1e-107 391.7 245 75.9
Haze_04102 Corylus avellana HOM05D005146 ORTHO05D006752 4.1e-107 391.7 246 76.8
Prupe.1G367100 Prunus persica HOM05D005146 ORTHO05D006752 4.1e-107 391.7 246 74.8
CANSAT11G0704 Cannabis sativa HOM05D005146 ORTHO05D006752 7.0e-107 391.0 245 76.3
Cfa006669 Carpinus fangiana HOM05D005146 ORTHO05D006752 7.0e-107 391.0 246 76.8
Eucgr.F01641 Eucalyptus grandis HOM05D005146 ORTHO05D006752 7.0e-107 391.0 245 75.5
Atru.chr13.312 Acer truncatum HOM05D005146 ORTHO05D006752 2.0e-106 389.4 245 76.7
Glyma.20G014100 Glycine max HOM05D005146 ORTHO05D006752 2.0e-106 389.4 246 74.4
CsaV3_2G029420 Cucumis sativus L. HOM05D005146 ORTHO05D006752 2.7e-106 389.0 245 75.1
MD15G1013600 Malus domestica HOM05D005146 ORTHO05D006752 2.7e-106 389.0 244 75.0
RcHm_v2.0_Chr6g0302671 Rosa chinensis HOM05D005146 ORTHO05D006752 3.5e-106 388.7 244 74.6
FvH4_2g38650 Fragaria vesca HOM05D005146 ORTHO05D006752 5.9e-106 387.9 244 74.2
FAN27G1976 Fragaria x ananassa HOM05D005146 ORTHO05D006752 5.9e-106 387.9 244 74.2
Glyma.07G217500 Glycine max HOM05D005146 ORTHO05D006752 5.9e-106 387.9 246 74.4
THA.LOC104825772 Tarenaya hassleriana HOM05D005146 ORTHO05D006752 7.8e-106 387.5 246 75.2
Aa31LG2G18510 Aethionema arabicum HOM05D005146 ORTHO05D006752 1.0e-105 387.1 248 75.0
Aqoxy6G00492 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 2.3e-105 386.0 246 74.4
FAN15G2679 Fragaria x ananassa HOM05D005146 ORTHO05D006752 2.3e-105 386.0 244 73.8
Os03g0355800 Oryza sativa ssp. japonica HOM05D005146 ORTHO05D006752 2.9e-105 385.6 246 73.6
AT4G31790 Arabidopsis thaliana HOM05D005146 ORTHO05D006752 3.8e-105 385.2 248 74.2
Phvul.001G002400 Phaseolus vulgaris HOM05D005146 ORTHO05D006752 3.8e-105 385.2 246 74.0
Oeu020876.1 Olea europaea HOM05D005146 ORTHO05D006752 5.0e-105 384.8 235 78.3
Sed0001191 Sechium edule HOM05D005146 ORTHO05D006752 8.6e-105 384.0 244 74.2
TPR.G34539 Trifolium pratense HOM05D005146 ORTHO05D006752 8.6e-105 384.0 247 72.1
Ah.08g209140 Amaranthus hybridus HOM05D005146 ORTHO05D006752 1.1e-104 383.6 278 68.3
VMungo0251G0853 Vigna mungo HOM05D005146 ORTHO05D006752 1.1e-104 383.6 246 73.2
FAN20G2808 Fragaria x ananassa HOM05D005146 ORTHO05D006752 1.5e-104 383.3 244 73.4
CDE05G1835 Ceratophyllum demersum HOM05D005146 ORTHO05D006752 1.9e-104 382.9 243 73.7
Carub.0007s0877 Capsella rubella HOM05D005146 ORTHO05D006752 2.5e-104 382.5 246 74.0
Thhalv10025950m.g Eutrema salsugineum HOM05D005146 ORTHO05D006752 2.5e-104 382.5 248 74.2
Psat5g013440 Pisum sativum HOM05D005146 ORTHO05D006752 2.5e-104 382.5 246 72.8
Sp7g29580 Schrenkiella parvula HOM05D005146 ORTHO05D006752 4.3e-104 381.7 246 74.0
unitig_746.g26814 Utricularia gibba HOM05D005146 ORTHO05D006752 4.3e-104 381.7 243 74.9
AL7G20220 Arabidopsis lyrata HOM05D005146 ORTHO05D006752 5.6e-104 381.3 248 73.8
Ca_14210_v3 Cicer arietinum L. HOM05D005146 ORTHO05D006752 1.2e-103 380.2 246 72.8
BcaC09g51970 Brassica carinata HOM05D005146 ORTHO05D006752 1.6e-103 379.8 246 73.6
BolC1t00708H Brassica oleracea HOM05D005146 ORTHO05D006752 1.6e-103 379.8 246 73.6
Zm00001eb017150 Zea mays HOM05D005146 ORTHO05D006752 1.6e-103 379.8 247 72.9
Aqoxy5G01768 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 2.1e-103 379.4 246 73.2
BraA01t00610Z Brassica rapa HOM05D005146 ORTHO05D006752 2.1e-103 379.4 246 73.6
Lalb_Chr23g0266181 Lupinus albus HOM05D005146 ORTHO05D006752 2.1e-103 379.4 244 73.4
C01p07160 Brassica napus HOM05D005146 ORTHO05D006752 2.8e-103 379.0 246 73.6
CARHR239690 Cardamine hirsuta HOM05D005146 ORTHO05D006752 8.0e-103 377.5 247 73.3
A01p06490 Brassica napus HOM05D005146 ORTHO05D006752 1.0e-102 377.1 246 73.2
CSS0007392 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 1.0e-102 377.1 243 75.7
CSS0032974 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 1.0e-102 377.1 243 75.7
MD08G1014100 Malus domestica HOM05D005146 ORTHO05D006752 1.4e-102 376.7 244 72.1
BcaNung05185 Brassica carinata HOM05D005146 ORTHO05D006752 5.2e-102 374.8 246 72.4
Gorai.004G015300 Gossypium raimondii HOM05D005146 ORTHO05D006752 5.7e-101 371.3 223 77.6
EL10Ac6g13895 Beta vulgaris HOM05D005146 ORTHO05D006752 7.5e-101 370.9 280 65.0
COL.COLO4_37538 Corchorus olitorius HOM05D005146 ORTHO05D006752 2.9e-100 369.0 231 77.1
AUR62019460 Chenopodium quinoa HOM05D005146 ORTHO05D006752 3.7e-100 368.6 246 72.8
arahy.Tifrunner.gnm1.ann1.RM6BI2 Arachis hypogaea HOM05D005146 ORTHO05D006752 4.9e-100 368.2 247 70.4
Duzib150G0501 Durio zibethinus HOM05D005146 ORTHO05D006752 1.1e-99 367.1 222 78.4
arahy.Tifrunner.gnm1.ann1.DQ6KFY Arachis hypogaea HOM05D005146 ORTHO05D006752 5.4e-99 364.8 247 70.0
Lj1g0002754 Lotus japonicus HOM05D005146 ORTHO05D006752 5.4e-99 364.8 246 69.9
vmacro21720 Vaccinium macrocarpon HOM05D005146 ORTHO05D006752 7.0e-99 364.4 222 77.5
arahy.Tifrunner.gnm1.ann1.VN499F Arachis hypogaea HOM05D005146 ORTHO05D006752 1.6e-98 363.2 247 70.0
ClCG08G014400 Citrullus lanatus HOM05D005146 ORTHO05D006752 1.9e-96 356.3 245 69.4
MBI09_g15694_MAGBIO Magnolia biondii HOM05D005146 ORTHO05D006752 2.5e-96 355.9 357 53.5
Lj5g0000481 Lotus japonicus HOM05D005146 ORTHO05D006752 5.6e-96 354.8 246 68.3
Hma1.2p1_0638F.1_g193760 Hydrangea macrophylla HOM05D005146 ORTHO05D006752 2.8e-95 352.4 223 75.3
arahy.Tifrunner.gnm1.ann1.NX94TN Arachis hypogaea HOM05D005146 ORTHO05D006752 1.1e-94 350.5 277 62.5
AagrBONN_evm.TU.Sc2ySwM_117.1420 Anthoceros agrestis HOM05D005146 ORTHO05D006752 1.2e-93 347.1 244 65.2
Pp3c25_4490 Physcomitrium patens HOM05D005146 ORTHO05D006752 7.5e-93 344.4 244 65.2
AagrBONN_evm.TU.Sc2ySwM_368.2751 Anthoceros agrestis HOM05D005146 ORTHO05D006752 9.8e-93 344.0 244 64.8
Mapoly0107s0028 Marchantia polymorpha HOM05D005146 ORTHO05D006752 1.7e-92 343.2 245 65.7
MELO3C011001.2 Cucumis melo HOM05D005146 ORTHO05D006752 6.4e-92 341.3 257 66.1
Peaxi162Scf00438g00626 Petunia axillaris HOM05D005146 ORTHO05D006752 7.0e-91 337.8 243 69.1
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 3.0e-89 332.4 221 73.3
TAR628G0140 Trochodendron aralioides HOM05D005146 ORTHO05D006752 1.6e-87 326.6 197 79.7
SMO146G0393 Selaginella moellendorffii HOM05D005146 ORTHO05D006752 6.8e-86 321.2 244 62.7
CBR_g41468 Chara braunii HOM05D005146 ORTHO05D006752 4.9e-84 315.1 244 63.1
Cre05.g233300 Chlamydomonas reinhardtii HOM05D005146 ORTHO05D006752 1.2e-79 300.4 244 59.8
CSS0032399 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 5.2e-78 295.0 224 67.4
Sc26g0004380 Simmondsia chinensis HOM05D005146 ORTHO05D006752 5.2e-78 295.0 181 75.1
RcHm_v2.0_Chr7g0221331 Rosa chinensis HOM05D005146 ORTHO05D006752 1.5e-77 293.5 244 60.7
MCO08G273 Micromonas commoda HOM05D005146 ORTHO05D006752 8.4e-76 287.7 247 55.5
Oeu039057.1 Olea europaea HOM05D005146 ORTHO05D006752 5.1e-73 278.5 242 60.7
PRCOL_00004436 Prasinoderma coloniale HOM05D005146 ORTHO05D006752 2.5e-72 276.2 263 54.0
C09p44220 Brassica napus HOM05D005146 ORTHO05D006752 1.6e-71 273.5 179 72.1
BolC8t49001H Brassica oleracea HOM05D005146 ORTHO05D006752 2.6e-69 266.2 179 70.4
C08p13630 Brassica napus HOM05D005146 ORTHO05D006752 9.9e-69 264.2 179 69.8
Lj4A797T61 Lonicera japonica HOM05D005146 ORTHO05D006752 5.4e-67 258.5 152 81.6
MSTRG.25237 Avicennia marina HOM05D005146 ORTHO05D006752 2.1e-66 256.5 154 76.0
BcaC04g20385 Brassica carinata HOM05D005146 ORTHO05D006752 1.3e-63 247.3 236 54.7
Haze_26822 Corylus avellana HOM05D005146 ORTHO05D006752 7.6e-61 238.0 248 48.0
BcaC04g20389 Brassica carinata HOM05D005146 ORTHO05D006752 1.3e-60 237.3 156 70.5
ATR0816G001 Amborella trichopoda HOM05D005146 ORTHO05D006752 1.4e-59 233.8 142 81.0
AUR62036170 Chenopodium quinoa HOM05D005146 ORTHO05D006752 1.9e-56 223.4 208 57.2
Medtr1g107520 Medicago truncatula HOM05D005146 ORTHO05D006752 8.7e-49 198.0 138 73.2
BolC9t57294H Brassica oleracea HOM05D005146 ORTHO05D006752 1.5e-45 187.2 154 60.4
MELO3C029148.2 Cucumis melo HOM05D005146 ORTHO05D006752 1.7e-44 183.7 181 54.1
CSS0002428 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 5.9e-37 158.7 245 41.6
BcaC04g20387 Brassica carinata HOM05D005146 ORTHO05D006752 1.3e-36 157.5 236 41.5
Duzib170G0783 Durio zibethinus HOM05D005146 ORTHO05D006752 6.5e-36 155.2 223 40.8
Medtr3g114210 Medicago truncatula HOM05D005146 ORTHO05D006752 2.7e-34 149.8 159 54.7
Lj4A797T60 Lonicera japonica HOM05D005146 ORTHO05D006752 3.7e-31 139.4 92 68.5
Oeu039054.1 Olea europaea HOM05D000784 ORTHO05D000116 7.2e-27 125.2 67 83.6
BolC8t52160H Brassica oleracea HOM05D005146 ORTHO05D032927 7.4e-24 115.2 177 43.5
Lsat_1_v5_gn_2_8581 Lactuca sativa HOM05D000202 ORTHO05D000117 7.0e-22 108.6 135 43.0
BcaC04g20388 Brassica carinata HOM05D005146 ORTHO05D006752 2.6e-21 106.7 59 81.4
BcaC07g41610 Brassica carinata HOM05D005146 ORTHO05D032927 4.5e-21 105.9 99 55.6
C08p46100 Brassica napus HOM05D005146 ORTHO05D032927 4.5e-21 105.9 98 56.1
Lsat_1_v5_gn_2_8661 Lactuca sativa HOM05D000202 ORTHO05D000117 5.9e-21 105.5 135 42.2
MELO3C032066.2 Cucumis melo HOM05D005146 ORTHO05D006752 2.2e-15 87.0 66 66.7
CAN.G1688.3 Capsicum annuum HOM05D005146 ORTHO05D011342 1.4e-14 84.3 56 66.1
SEGI_30125 Sequoiadendron giganteum HOM05D005146 ORTHO05D006752 4.5e-13 79.3 65 60.0
BcaNung04119 Brassica carinata HOM05D001941 ORTHO05D002198 1.2e-10 71.2 45 73.3
Actinidia16979 Actinidia chinensis HOM05D005146 ORTHO05D006752 1.8e-09 67.4 86 43.0
MELO3C033356.2 Cucumis melo HOM05D005146 ORTHO05D166957 7.5e-08 62.0 45 64.4
Cfa017682 Carpinus fangiana HOM05D005146 ORTHO05D123472 4.8e-07 59.3 45 66.7


User provided reference genes

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