Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_025877 Vanilla planifolia HOM05D005703 ORTHO05D006643 8.8e-182 640.2 330 100.0
CiPaw.06G130900 Carya illinoinensis HOM05D005703 ORTHO05D006643 7.6e-117 424.5 307 71.3
Hma1.2p1_0066F.1_g035910 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 3.2e-115 419.1 275 74.5
Aqoxy5G01507 Aquilegia oxysepala HOM05D005703 ORTHO05D006643 4.2e-115 418.7 286 73.1
Actinidia02238 Actinidia chinensis HOM05D005703 ORTHO05D006643 5.4e-115 418.3 296 71.3
Atru.chr5.3109 Acer truncatum HOM05D005703 ORTHO05D006643 9.3e-115 417.5 308 69.8
QL11p045612 Quercus lobata HOM05D005703 ORTHO05D006643 2.1e-114 416.4 296 71.3
Actinidia27862 Actinidia chinensis HOM05D005703 ORTHO05D006643 3.5e-114 415.6 276 74.6
Eucgr.D00178 Eucalyptus grandis HOM05D005703 ORTHO05D006643 6.0e-114 414.8 276 75.0
TWI31G0330 Tripterygium wilfordii HOM05D005703 ORTHO05D006643 6.0e-114 414.8 300 69.7
GSVIVG01024205001 Vitis vinifera HOM05D005703 ORTHO05D006643 6.0e-114 414.8 297 72.1
Potri.004G160800 Populus trichocarpa HOM05D005703 ORTHO05D006643 7.8e-114 414.5 276 74.6
Nn6g32200 Nelumbo nucifera HOM05D005703 ORTHO05D006643 1.3e-113 413.7 289 72.0
ATR0661G148 Amborella trichopoda HOM05D005703 ORTHO05D006643 3.9e-113 412.1 293 72.0
MSTRG.20056 Avicennia marina HOM05D005703 ORTHO05D006643 5.1e-113 411.8 279 73.8
CSS0001334 Camellia sinensis var. sinensis HOM05D005703 ORTHO05D006643 5.1e-113 411.8 274 75.2
MELO3C002791.2 Cucumis melo HOM05D005703 ORTHO05D006643 1.5e-112 410.2 276 75.4
Os09g0531100 Oryza sativa ssp. japonica HOM05D005703 ORTHO05D006643 1.5e-112 410.2 276 73.2
Thecc.02G078100 Theobroma cacao HOM05D005703 ORTHO05D006643 1.5e-112 410.2 290 72.8
Cpa.g.sc150.43 Carica papaya HOM05D005703 ORTHO05D006643 1.9e-112 409.8 311 67.2
MD10G1066100 Malus domestica HOM05D005703 ORTHO05D006643 1.9e-112 409.8 276 73.6
Manes.11G087800 Manihot esculenta HOM05D005703 ORTHO05D006643 2.5e-112 409.5 302 69.9
RcHm_v2.0_Chr6g0266981 Rosa chinensis HOM05D005703 ORTHO05D006643 3.3e-112 409.1 276 72.5
VMungo1127G0812 Vigna mungo HOM05D005703 ORTHO05D006643 3.3e-112 409.1 281 72.2
CsaV3_7G000370 Cucumis sativus L. HOM05D005703 ORTHO05D006643 5.6e-112 408.3 276 75.0
Sopen01g052320 Solanum pennellii HOM05D005703 ORTHO05D006643 9.6e-112 407.5 276 72.8
FvH4_2g10050 Fragaria vesca HOM05D005703 ORTHO05D006643 2.1e-111 406.4 304 68.8
Solyc01g110160.4 Solanum lycopersicum HOM05D005703 ORTHO05D006643 2.1e-111 406.4 276 72.5
Gohir.D12G030600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 8.1e-111 404.4 278 73.0
Sabra04G0107600 Salix brachista HOM05D005703 ORTHO05D006643 2.4e-110 402.9 275 73.8
Gorai.008G031500 Gossypium raimondii HOM05D005703 ORTHO05D006643 3.1e-110 402.5 278 72.3
COL.COLO4_26014 Corchorus olitorius HOM05D005703 ORTHO05D006643 2.6e-109 399.4 278 72.3
Glyma.11G112900 Glycine max HOM05D005703 ORTHO05D006643 2.6e-109 399.4 283 70.0
Lalb_Chr03g0025421 Lupinus albus HOM05D005703 ORTHO05D006643 2.6e-109 399.4 279 69.5
Lj3g0017018 Lotus japonicus HOM05D005703 ORTHO05D006643 5.8e-109 398.3 276 69.6
PGSC0003DMG400030971 Solanum tuberosum HOM05D005703 ORTHO05D006643 9.9e-109 397.5 286 69.9
PSO170G4951 Papaver somniferum HOM05D005703 ORTHO05D006643 1.3e-108 397.1 302 67.9
TPR.G16235 Trifolium pratense HOM05D005703 ORTHO05D006643 1.9e-107 393.3 277 68.6
Migut.B00193 Erythranthe guttata HOM05D005703 ORTHO05D006643 4.2e-107 392.1 275 70.9
CARHR112270 Cardamine hirsuta HOM05D005703 ORTHO05D006643 5.4e-107 391.7 303 66.3
Zm00001eb353590 Zea mays HOM05D005703 ORTHO05D006643 1.2e-106 390.6 280 69.3
Ca_20918_v3 Cicer arietinum L. HOM05D005703 ORTHO05D006643 1.6e-106 390.2 281 68.3
ECA234G1754 Erigeron canadensis HOM05D005703 ORTHO05D006643 1.6e-106 390.2 272 71.3
AT2G21385 Arabidopsis thaliana HOM05D005703 ORTHO05D006643 2.1e-106 389.8 303 65.3
Peaxi162Scf00016g00231 Petunia axillaris HOM05D005703 ORTHO05D006643 2.1e-106 389.8 288 69.1
HanXRQChr12g0373591 Helianthus annuus HOM05D005703 ORTHO05D006643 2.7e-106 389.4 288 68.8
Glyma.12G038800 Glycine max HOM05D005703 ORTHO05D006643 6.0e-106 388.3 283 67.5
Sp4g00560 Schrenkiella parvula HOM05D005703 ORTHO05D006643 6.0e-106 388.3 289 68.2
Carub.0004s0043 Capsella rubella HOM05D005703 ORTHO05D006643 7.9e-106 387.9 303 65.7
Rhsim05G0069500 Rhododendron simsii HOM05D005703 ORTHO05D006643 7.9e-106 387.9 279 68.1
AL4G10560 Arabidopsis lyrata HOM05D005703 ORTHO05D006643 1.0e-105 387.5 303 64.7
Ciclev10028680m.g Citrus clementina HOM05D005703 ORTHO05D006643 1.0e-105 387.5 313 64.2
Aa31LG7G15130 Aethionema arabicum HOM05D005703 ORTHO05D001153 1.8e-105 386.7 303 66.0
THA.LOC104824803 Tarenaya hassleriana HOM05D005703 ORTHO05D006643 1.8e-105 386.7 276 69.2
arahy.Tifrunner.gnm1.ann1.YBLQ63 Arachis hypogaea HOM05D005703 ORTHO05D006643 6.7e-105 384.8 278 68.3
Medtr4g071190 Medicago truncatula HOM05D005703 ORTHO05D006643 2.5e-104 382.9 285 67.0
Phvul.011G040900 Phaseolus vulgaris HOM05D005703 ORTHO05D006643 2.1e-103 379.8 253 73.1
CDE09G1081 Ceratophyllum demersum HOM05D005703 ORTHO05D006643 2.8e-103 379.4 323 61.9
Lsat_1_v5_gn_5_125081 Lactuca sativa HOM05D005703 ORTHO05D006643 3.7e-103 379.0 310 63.9
Prupe.8G088000 Prunus persica HOM05D005703 ORTHO05D006643 4.8e-103 378.6 276 69.9
Sc14g0002020 Simmondsia chinensis HOM05D005703 ORTHO05D006643 4.8e-103 378.6 276 69.6
FAN15G0097 Fragaria x ananassa HOM05D005703 ORTHO05D006643 1.8e-102 376.7 357 58.5
AUR62010417 Chenopodium quinoa HOM05D005703 ORTHO05D006643 3.1e-102 375.9 304 66.4
AUR62016798 Chenopodium quinoa HOM05D005703 ORTHO05D006643 5.3e-102 375.2 319 63.0
C08p41580 Brassica napus HOM05D005703 ORTHO05D006643 9.0e-102 374.4 278 68.3
BraA09t41216Z Brassica rapa HOM05D005703 ORTHO05D006643 1.2e-101 374.0 310 64.2
A09p58290 Brassica napus HOM05D005703 ORTHO05D006643 1.5e-101 373.6 309 64.1
BolC8t51720H Brassica oleracea HOM05D005703 ORTHO05D006643 3.4e-101 372.5 304 64.1
Psat7g139960 Pisum sativum HOM05D005703 ORTHO05D006643 2.9e-100 369.4 278 66.9
Nitab4.5_0011132g0020 Nicotiana tabacum HOM05D005703 ORTHO05D006643 8.4e-100 367.9 281 67.6
Thhalv10000241m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 4.6e-98 362.1 251 70.5
Haze_02308 Corylus avellana HOM05D005703 ORTHO05D006643 1.1e-94 350.9 276 67.0
Hma1.2p1_0066F.1_g035920 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 7.6e-93 344.7 275 64.4
Dinv23475 Davidia involucrata HOM05D005703 ORTHO05D006643 1.3e-92 344.0 248 70.2
arahy.Tifrunner.gnm1.ann1.R55P3J Arachis hypogaea HOM05D005703 ORTHO05D006643 1.9e-91 340.1 251 66.9
SalBow6G5125 Salvia bowleyana HOM05D005703 ORTHO05D006643 5.5e-91 338.6 272 66.2
MELO3C013421.2 Cucumis melo HOM05D005703 ORTHO05D006643 1.6e-90 337.0 275 65.5
SGA_v2.0_scaffold58G20483 Striga asiatica HOM05D005703 ORTHO05D006643 3.5e-90 335.9 290 61.0
DCAR_022931 Daucus carota HOM05D005703 ORTHO05D006643 3.9e-89 332.4 279 64.2
ClCG02G004580 Citrullus lanatus HOM05D005703 ORTHO05D006643 3.7e-87 325.9 276 64.9
Nitab4.5_0002723g0090 Nicotiana tabacum HOM05D005703 ORTHO05D006643 4.5e-85 318.9 273 62.3
EL10Ac9g21670 Beta vulgaris HOM05D005703 ORTHO05D006643 2.2e-84 316.6 298 58.4
vmacro17444 Vaccinium macrocarpon HOM05D005703 ORTHO05D006643 1.8e-81 307.0 284 56.7
CANSAT11G2682 Cannabis sativa HOM05D005703 ORTHO05D006643 2.0e-80 303.5 302 58.3
Pp3c22_4620 Physcomitrium patens HOM05D005703 ORTHO05D006643 1.3e-79 300.8 289 53.3
Mapoly0084s0041 Marchantia polymorpha HOM05D005703 ORTHO05D006643 6.3e-79 298.5 284 54.6
Sed0007704 Sechium edule HOM05D005703 ORTHO05D006643 5.3e-78 295.4 206 71.8
Cfa005074 Carpinus fangiana HOM05D005703 ORTHO05D006643 1.5e-77 293.9 191 77.5
Cc02_g17090 Coffea canephora HOM05D005703 ORTHO05D006643 1.3e-76 290.8 196 71.9
Hund00227 Selenicereus undatus HOM05D005703 ORTHO05D006643 1.3e-76 290.8 276 57.2
FAN24G3327 Fragaria x ananassa HOM05D005703 ORTHO05D006643 6.5e-76 288.5 304 53.3
FAN20G2472 Fragaria x ananassa HOM05D005703 ORTHO05D006643 8.5e-76 288.1 307 52.8
FAN27G2042 Fragaria x ananassa HOM05D005703 ORTHO05D006643 8.5e-76 288.1 304 53.0
unitig_0.g54 Utricularia gibba HOM05D005703 ORTHO05D006643 1.0e-73 281.2 201 69.2
SMO356G0671 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 2.0e-72 276.9 276 52.2
Lj5C191G8 Lonicera japonica HOM05D005703 ORTHO05D006643 3.3e-72 276.2 277 54.9
SMO290G0004 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 2.8e-71 273.1 278 51.8
SMO290G0013 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 1.1e-70 271.2 255 54.9
SMO356G0278 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 9.4e-67 258.1 257 54.1
BcaB06g27102 Brassica carinata HOM05D005703 ORTHO05D006643 1.3e-63 247.7 259 53.3
Gohir.A12G041600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 9.1e-62 241.5 167 71.3
BraA01t01909Z Brassica rapa HOM05D005703 ORTHO05D006643 2.5e-59 233.4 206 60.2
AagrBONN_evm.TU.Sc2ySwM_228.378 Anthoceros agrestis HOM05D005703 ORTHO05D006643 8.8e-57 224.9 197 58.9
Thhalv10005656m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 1.2e-53 214.5 180 62.2
Duzib132G0736 Durio zibethinus HOM05D005703 ORTHO05D006643 2.9e-52 209.9 329 42.6
MBI01_g29867_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 1.2e-42 177.9 114 76.3
TAR381G0871 Trochodendron aralioides HOM05D005703 ORTHO05D006643 3.0e-41 173.3 131 67.2
BolC1t00937H Brassica oleracea HOM05D005703 ORTHO05D006643 5.7e-40 169.1 143 62.9
C01p09750 Brassica napus HOM05D005703 ORTHO05D006643 2.3e-36 157.1 186 48.9
BolC2t11489H Brassica oleracea HOM05D005703 ORTHO05D006643 6.8e-33 145.6 185 45.9
CBR_g49480 Chara braunii HOM05D005703 ORTHO05D006643 5.8e-32 142.5 240 35.8
BolC4t23697H Brassica oleracea HOM05D005703 ORTHO05D006643 9.8e-32 141.7 188 44.7
BcaC04g19425 Brassica carinata HOM05D005703 ORTHO05D006643 3.5e-29 133.3 225 40.4
C09p55850 Brassica napus HOM05D005703 ORTHO05D006643 1.7e-28 131.0 214 39.7
C04p21760 Brassica napus HOM05D005703 ORTHO05D006643 6.6e-28 129.0 212 39.6
Potri.009G121902 Populus trichocarpa HOM05D005703 ORTHO05D006643 1.1e-27 128.3 104 63.5
BcaC01g06448 Brassica carinata HOM05D005703 ORTHO05D006643 1.4e-25 121.3 137 50.4
Cre08.g372000 Chlamydomonas reinhardtii HOM05D005703 ORTHO05D006643 1.8e-25 120.9 259 31.3
C02p54250 Brassica napus HOM05D005703 ORTHO05D006643 1.5e-24 117.9 211 38.9
PRCOL_00000952 Prasinoderma coloniale HOM05D005703 ORTHO05D006643 1.7e-23 114.4 239 31.4
QL11p045593 Quercus lobata HOM05D005703 ORTHO05D006643 2.9e-23 113.6 70 72.9
HanXRQChr14g0433731 Helianthus annuus HOM05D005703 ORTHO05D006643 6.4e-23 112.5 79 74.7
SEGI_33335 Sequoiadendron giganteum HOM05D005703 ORTHO05D006643 1.5e-19 101.3 93 54.8
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 3.3e-19 100.1 69 68.1
Cc02_g17080 Coffea canephora HOM05D005703 ORTHO05D006643 4.7e-18 96.3 70 67.1
MBI01_g29866_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 3.1e-17 93.6 66 71.2
unitig_0.g53 Utricularia gibba HOM05D005703 ORTHO05D006643 5.8e-16 89.4 71 60.6
C03p15450 Brassica napus HOM05D005703 ORTHO05D006643 8.4e-15 85.5 151 35.1
BcaC09g52221 Brassica carinata HOM05D005703 ORTHO05D006643 5.4e-14 82.8 65 63.1
C03p56750 Brassica napus HOM05D005703 ORTHO05D006643 3.9e-12 76.6 128 36.7
BolC1t00936H Brassica oleracea HOM05D005703 ORTHO05D006643 3.9e-12 76.6 61 60.7
C03p56740 Brassica napus HOM05D005703 ORTHO05D006643 1.1e-11 75.1 78 50.0
Lsat_1_v5_gn_1_61800 Lactuca sativa HOM05D005428 ORTHO05D002547 2.5e-11 73.9 57 61.4
Oeu037764.1 Olea europaea HOM05D005703 ORTHO05D006643 2.9e-07 60.5 47 59.6
AUR62033094 Chenopodium quinoa HOM05D005703 ORTHO05D006643 1.1e-06 58.5 108 35.2
CAN.G878.5 Capsicum annuum HOM05D000269 ORTHO05D000216 1.9e-06 57.8 45 62.2
MCO02G267 Micromonas commoda HOM05D005703 ORTHO05D006643 5.4e-06 56.2 141 31.9


User provided reference genes

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