Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_025871 Vanilla planifolia HOM05D004525 ORTHO05D005295 2.2e-103 379.0 201 100.0
TAR629G2664 Trochodendron aralioides HOM05D004525 ORTHO05D005295 2.9e-71 272.3 180 78.9
MBI04_g25309_MAGBIO Magnolia biondii HOM05D004525 ORTHO05D005295 1.5e-70 270.0 198 72.7
Nn3g18812 Nelumbo nucifera HOM05D004525 ORTHO05D005295 5.5e-70 268.1 177 76.3
Duzib205G1187 Durio zibethinus HOM05D004525 ORTHO05D005295 2.4e-65 252.7 176 74.4
Aqoxy3G00526 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 3.1e-65 252.3 179 71.5
Aqoxy5G04330 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 3.1e-65 252.3 179 71.5
Zm00001eb319380 Zea mays HOM05D004525 ORTHO05D005295 3.1e-65 252.3 178 74.7
Sabra01G0060700 Salix brachista HOM05D004525 ORTHO05D005295 9.1e-65 250.8 197 69.0
Gohir.A12G240200 Gossypium hirsutum HOM05D004525 ORTHO05D005295 1.2e-64 250.4 193 70.5
PSO017G1681 Papaver somniferum HOM05D004525 ORTHO05D005295 1.2e-64 250.4 169 72.8
GSVIVG01019654001 Vitis vinifera HOM05D004525 ORTHO05D005295 1.6e-64 250.0 197 69.0
Gorai.008G258800 Gossypium raimondii HOM05D004525 ORTHO05D005295 4.5e-64 248.4 193 70.5
Zm00001eb103320 Zea mays HOM05D004525 ORTHO05D005295 4.5e-64 248.4 174 74.7
PSO478G2085 Papaver somniferum HOM05D004525 ORTHO05D005295 7.7e-64 247.7 169 72.8
Thecc.03G220900 Theobroma cacao HOM05D004525 ORTHO05D005295 1.0e-63 247.3 196 70.4
Gohir.D12G241500 Gossypium hirsutum HOM05D004525 ORTHO05D005295 1.3e-63 246.9 193 69.9
Cpa.g.sc27.182 Carica papaya HOM05D004525 ORTHO05D005295 1.7e-63 246.5 191 69.6
Cc08_g16770 Coffea canephora HOM05D004525 ORTHO05D005295 1.7e-63 246.5 159 78.6
MD06G1119500 Malus domestica HOM05D004525 ORTHO05D005295 2.9e-63 245.7 196 70.4
Manes.09G101000 Manihot esculenta HOM05D004525 ORTHO05D005295 2.9e-63 245.7 196 68.9
TWI56G0194 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 2.9e-63 245.7 163 75.5
Dinv38179 Davidia involucrata HOM05D004525 ORTHO05D005295 5.0e-63 245.0 156 79.5
Ciclev10022441m.g Citrus clementina HOM05D004525 ORTHO05D005295 6.6e-63 244.6 183 70.5
Duzib068G1021 Durio zibethinus HOM05D004525 ORTHO05D005295 6.6e-63 244.6 193 69.4
Potri.001G083801 Populus trichocarpa HOM05D004525 ORTHO05D005295 8.6e-63 244.2 197 68.0
COL.COLO4_10799 Corchorus olitorius HOM05D004525 ORTHO05D005295 1.1e-62 243.8 195 69.2
MD14G1136300 Malus domestica HOM05D004525 ORTHO05D005295 1.1e-62 243.8 194 71.6
CSS0029651 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 1.5e-62 243.4 196 66.8
Hma1.2p1_0456F.1_g156630 Hydrangea macrophylla HOM05D004525 ORTHO05D005295 1.5e-62 243.4 155 78.1
Prupe.2G307200 Prunus persica HOM05D004525 ORTHO05D005295 2.5e-62 242.7 177 72.9
Atru.chr9.1879 Acer truncatum HOM05D004525 ORTHO05D005295 3.3e-62 242.3 192 68.8
PGSC0003DMG400029951 Solanum tuberosum HOM05D004525 ORTHO05D005295 3.3e-62 242.3 200 66.0
Nitab4.5_0001367g0040 Nicotiana tabacum HOM05D004525 ORTHO05D005295 7.2e-62 241.1 199 66.8
Nitab4.5_0012632g0010 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.2e-61 240.4 199 66.8
Solyc08g065160.3 Solanum lycopersicum HOM05D004525 ORTHO05D005295 1.6e-61 240.0 200 66.0
Sopen08g018760 Solanum pennellii HOM05D004525 ORTHO05D005295 1.6e-61 240.0 200 66.0
EL10Ac5g12425 Beta vulgaris HOM05D004525 ORTHO05D005295 2.1e-61 239.6 181 68.0
ECA246G3328 Erigeron canadensis HOM05D004525 ORTHO05D005295 2.8e-61 239.2 156 76.9
QL12p036922 Quercus lobata HOM05D004525 ORTHO05D005295 2.8e-61 239.2 199 65.3
Hund11348 Selenicereus undatus HOM05D004525 ORTHO05D005295 4.7e-61 238.4 157 75.2
SGA_v2.0_scaffold14G07039 Striga asiatica HOM05D004525 ORTHO05D005295 4.7e-61 238.4 193 65.8
SGA_v2.0_scaffold36G14274 Striga asiatica HOM05D004525 ORTHO05D005295 4.7e-61 238.4 193 65.8
FAN07G0034 Fragaria x ananassa HOM05D004525 ORTHO05D005295 6.1e-61 238.0 199 65.3
Prupe.5G130000 Prunus persica HOM05D004525 ORTHO05D005295 6.1e-61 238.0 196 67.9
QL02p027997 Quercus lobata HOM05D004525 ORTHO05D005295 6.1e-61 238.0 199 64.8
CSS0049671 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 8.0e-61 237.7 196 67.3
Lsat_1_v5_gn_3_14420 Lactuca sativa HOM05D004525 ORTHO05D005295 8.0e-61 237.7 196 65.8
PGR031G2275 Punica granatum HOM05D004525 ORTHO05D005295 8.0e-61 237.7 186 68.8
TWI36G0523 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 1.0e-60 237.3 155 76.1
Migut.E00628 Erythranthe guttata HOM05D004525 ORTHO05D005295 1.4e-60 236.9 171 68.4
FvH4_4g11450 Fragaria vesca HOM05D004525 ORTHO05D005295 1.4e-60 236.9 199 64.8
Potri.003G146900 Populus trichocarpa HOM05D004525 ORTHO05D005295 1.8e-60 236.5 198 66.7
CSS0036474 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 2.3e-60 236.1 196 66.8
CiPaw.11G112000 Carya illinoinensis HOM05D004525 ORTHO05D005295 2.3e-60 236.1 193 67.4
HanXRQChr17g0534221 Helianthus annuus HOM05D004525 ORTHO05D005295 4.0e-60 235.3 188 66.5
THA.LOC104809303 Tarenaya hassleriana HOM05D004525 ORTHO05D005295 5.2e-60 235.0 194 66.5
Actinidia22207 Actinidia chinensis HOM05D004525 ORTHO05D005295 6.8e-60 234.6 182 67.0
Os09g0528300 Oryza sativa ssp. japonica HOM05D004525 ORTHO05D005295 6.8e-60 234.6 158 75.3
Cfa011920 Carpinus fangiana HOM05D004525 ORTHO05D005295 8.9e-60 234.2 194 67.0
Ca_02991_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 8.9e-60 234.2 182 68.7
RcHm_v2.0_Chr1g0332661 Rosa chinensis HOM05D004525 ORTHO05D005295 1.2e-59 233.8 199 65.8
CiPaw.12G077100 Carya illinoinensis HOM05D004525 ORTHO05D005295 1.5e-59 233.4 193 66.8
Sabra03G0106900 Salix brachista HOM05D004525 ORTHO05D005295 1.5e-59 233.4 197 64.5
Aa31LG9G260 Aethionema arabicum HOM05D004525 ORTHO05D005295 2.0e-59 233.0 156 73.1
Ca_17957_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 2.6e-59 232.6 182 68.1
SalBow6G4763 Salvia bowleyana HOM05D004525 ORTHO05D005295 2.6e-59 232.6 199 61.8
Glyma.08G296500 Glycine max HOM05D004525 ORTHO05D005295 4.4e-59 231.9 195 65.6
ATR0620G086 Amborella trichopoda HOM05D004525 ORTHO05D005295 5.7e-59 231.5 177 67.2
Haze_04010 Corylus avellana HOM05D004525 ORTHO05D005295 5.7e-59 231.5 195 65.6
Glyma.18G125700 Glycine max HOM05D004525 ORTHO05D005295 5.7e-59 231.5 168 72.6
Medtr8g085570 Medicago truncatula HOM05D004525 ORTHO05D005295 5.7e-59 231.5 169 71.0
AUR62007057 Chenopodium quinoa HOM05D004525 ORTHO05D005295 7.5e-59 231.1 172 69.2
Cfa006748 Carpinus fangiana HOM05D004525 ORTHO05D005295 9.8e-59 230.7 195 65.1
FAN22G0758 Fragaria x ananassa HOM05D004525 ORTHO05D005295 9.8e-59 230.7 200 65.0
unitig_744.g24303 Utricularia gibba HOM05D004525 ORTHO05D005295 9.8e-59 230.7 193 63.7
RcHm_v2.0_Chr6g0273561 Rosa chinensis HOM05D004525 ORTHO05D005295 1.7e-58 229.9 199 64.8
AT1G26665 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 2.2e-58 229.6 199 62.3
Thhalv10008848m.g Eutrema salsugineum HOM05D004525 ORTHO05D005295 2.2e-58 229.6 200 62.5
MSTRG.24865 Avicennia marina HOM05D004525 ORTHO05D005295 2.8e-58 229.2 190 64.2
BcaC06g35131 Brassica carinata HOM05D004525 ORTHO05D005295 2.8e-58 229.2 199 62.8
BcaB03g14082 Brassica carinata HOM05D004525 ORTHO05D005295 3.7e-58 228.8 199 63.3
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 4.9e-58 228.4 199 62.3
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 8.3e-58 227.6 199 62.3
MSTRG.12201 Avicennia marina HOM05D004525 ORTHO05D005295 1.4e-57 226.9 196 63.8
Sc01g0010720 Simmondsia chinensis HOM05D004525 ORTHO05D005295 1.4e-57 226.9 196 60.2
DCAR_011870 Daucus carota HOM05D004525 ORTHO05D005295 1.8e-57 226.5 180 67.2
Lalb_Chr13g0294931 Lupinus albus HOM05D004525 ORTHO05D005295 2.4e-57 226.1 168 69.0
CDE07G1557 Ceratophyllum demersum HOM05D004525 ORTHO05D005295 3.1e-57 225.7 173 67.6
CsaV3_3G000870 Cucumis sativus L. HOM05D004525 ORTHO05D005295 3.1e-57 225.7 199 63.3
Phvul.003G069600 Phaseolus vulgaris HOM05D004525 ORTHO05D005295 3.1e-57 225.7 192 64.6
vmacro11499 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 3.1e-57 225.7 169 70.4
Eucgr.C04229 Eucalyptus grandis HOM05D004525 ORTHO05D005295 4.1e-57 225.3 185 64.9
ClCG10G000810 Citrullus lanatus HOM05D004525 ORTHO05D005295 5.4e-57 224.9 199 63.3
DCAR_006547 Daucus carota HOM05D004525 ORTHO05D005295 5.4e-57 224.9 178 65.7
AL1G39060 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 7.0e-57 224.6 199 63.8
Psat7g073160 Pisum sativum HOM05D004525 ORTHO05D005295 7.0e-57 224.6 182 66.5
Lj8A200T57 Lonicera japonica HOM05D004525 ORTHO05D005295 1.2e-56 223.8 151 74.8
Lalb_Chr12g0205381 Lupinus albus HOM05D004525 ORTHO05D005295 1.6e-56 223.4 178 64.6
Rhsim07G0078000 Rhododendron simsii HOM05D004525 ORTHO05D005295 1.6e-56 223.4 196 62.2
Sed0024458 Sechium edule HOM05D004525 ORTHO05D005295 1.6e-56 223.4 199 61.8
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 2.0e-56 223.0 199 59.8
VMungo0251G0643 Vigna mungo HOM05D004525 ORTHO05D005295 4.5e-56 221.9 194 66.0
Ah.12g053230 Amaranthus hybridus HOM05D004525 ORTHO05D005295 1.0e-55 220.7 157 70.1
CARHR212640 Cardamine hirsuta HOM05D004525 ORTHO05D005295 1.0e-55 220.7 177 65.0
Sp1g22150 Schrenkiella parvula HOM05D004525 ORTHO05D005295 2.9e-55 219.2 199 58.8
CARHR025300 Cardamine hirsuta HOM05D004525 ORTHO05D005295 3.8e-55 218.8 165 67.3
Lj4g0018067 Lotus japonicus HOM05D004525 ORTHO05D005295 6.6e-55 218.0 186 64.0
Atru.chr3.1913 Acer truncatum HOM05D004525 ORTHO05D005295 1.1e-54 217.2 156 71.8
Haze_09177 Corylus avellana HOM05D004525 ORTHO05D005295 1.5e-54 216.9 184 64.7
Carub.0001s2436 Capsella rubella HOM05D004525 ORTHO05D005295 2.1e-53 213.0 199 57.8
AL7G47302 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 1.0e-52 210.7 176 64.8
TPR.G15828 Trifolium pratense HOM05D004525 ORTHO05D005295 1.4e-52 210.3 182 63.7
AT5G41910 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 1.8e-52 209.9 196 62.2
CANSAT56G2042 Cannabis sativa HOM05D004525 ORTHO05D005295 3.1e-52 209.1 205 58.0
Oeu022035.1 Olea europaea HOM05D004525 ORTHO05D005295 2.0e-51 206.5 258 51.2
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 3.4e-51 205.7 177 63.3
unitig_21.g20890 Utricularia gibba HOM05D004525 ORTHO05D005295 7.5e-51 204.5 194 58.8
vmacro13851 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 7.5e-51 204.5 196 60.7
Psat7g073280 Pisum sativum HOM05D004525 ORTHO05D005295 1.7e-50 203.4 159 68.6
BraA09t39504Z Brassica rapa HOM05D004525 ORTHO05D005295 8.3e-50 201.1 180 60.0
TPR.G11962 Trifolium pratense HOM05D004525 ORTHO05D005295 1.7e-47 193.4 182 59.9
Lj4g0019040 Lotus japonicus HOM05D004525 ORTHO05D005295 8.6e-47 191.0 161 64.6
FAN17G2704 Fragaria x ananassa HOM05D004525 ORTHO05D005295 3.3e-46 189.1 202 57.4
C05p24330 Brassica napus HOM05D004525 ORTHO05D005295 2.1e-45 186.4 147 66.7
Peaxi162Scf01444g00013 Petunia axillaris HOM05D004525 ORTHO05D005295 2.1e-45 186.4 193 57.0
FAN08G2166 Fragaria x ananassa HOM05D000319 ORTHO05D035382 2.8e-45 186.0 150 65.3
Psat7g074000 Pisum sativum HOM05D004525 ORTHO05D005295 2.8e-45 186.0 155 61.9
Psat7g072880 Pisum sativum HOM05D004525 ORTHO05D005295 1.2e-43 180.6 155 60.6
AUR62019920 Chenopodium quinoa HOM05D004525 ORTHO05D005295 9.8e-43 177.6 108 80.6
arahy.Tifrunner.gnm1.ann1.0LH6ZS Arachis hypogaea HOM05D004525 ORTHO05D005295 3.7e-42 175.6 193 53.9
arahy.Tifrunner.gnm1.ann1.DJD4V2 Arachis hypogaea HOM05D004525 ORTHO05D005295 8.3e-42 174.5 193 53.4
Mapoly0151s0039 Marchantia polymorpha HOM05D004525 ORTHO05D005295 1.1e-41 174.1 158 54.4
TAR375G0036 Trochodendron aralioides HOM05D004525 ORTHO05D005295 1.2e-40 170.6 106 78.3
Pp3c11_16910 Physcomitrium patens HOM05D004525 ORTHO05D005295 1.6e-40 170.2 162 49.4
Peaxi162Scf00640g00032 Petunia axillaris HOM05D004525 ORTHO05D005295 2.3e-39 166.4 127 67.7
FvH4_5g19692 Fragaria vesca HOM05D004525 ORTHO05D005295 8.6e-39 164.5 111 75.7
MELO3C013773.2 Cucumis melo HOM05D004525 ORTHO05D005295 1.9e-38 163.3 199 50.3
Nitab4.5_0017193g0030 Nicotiana tabacum HOM05D004525 ORTHO05D005295 7.3e-38 161.4 174 54.6
Actinidia27285 Actinidia chinensis HOM05D004525 ORTHO05D005295 1.2e-37 160.6 179 53.1
SMO301G0053 Selaginella moellendorffii HOM05D004525 ORTHO05D005295 4.0e-36 155.6 146 53.4
AagrBONN_evm.TU.Sc2ySwM_117.1849 Anthoceros agrestis HOM05D004525 ORTHO05D005295 1.7e-34 150.2 177 42.4
Cfa007058 Carpinus fangiana HOM05D004525 ORTHO05D005295 4.9e-34 148.7 145 59.3
AagrBONN_evm.TU.Sc2ySwM_368.381 Anthoceros agrestis HOM05D004525 ORTHO05D005295 8.3e-34 147.9 163 43.6
PGSC0003DMG400043501 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.6e-32 143.7 130 60.8
PGSC0003DMG400039131 Solanum tuberosum HOM05D004525 ORTHO05D005295 2.7e-32 142.9 129 58.1
CAN.G6.3 Capsicum annuum HOM05D004525 ORTHO05D005295 3.5e-32 142.5 82 81.7
SEGI_32557 Sequoiadendron giganteum HOM05D004525 ORTHO05D005295 3.5e-32 142.5 116 61.2
PGSC0003DMG400008601 Solanum tuberosum HOM05D004525 ORTHO05D005295 3.5e-32 142.5 130 60.8
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 4.6e-32 142.1 91 70.3
PGSC0003DMG400040735 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.0e-31 141.0 132 59.8
PGSC0003DMG400017120 Solanum tuberosum HOM05D004525 ORTHO05D005295 8.6e-31 137.9 130 60.8
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 1.2e-29 134.0 103 66.0
Nitab4.5_0002724g0080 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.3e-18 97.4 121 49.6
RcHm_v2.0_Chr7g0187021 Rosa chinensis HOM05D004525 ORTHO05D005295 4.2e-17 92.4 155 41.9
CAN.G1631.10 Capsicum annuum HOM05D004525 ORTHO05D005295 1.9e-14 83.6 86 57.0
RcHm_v2.0_Chr5g0055281 Rosa chinensis HOM05D004525 ORTHO05D005295 2.4e-12 76.6 58 62.1
TAR374G0495 Trochodendron aralioides HOM05D004525 ORTHO05D005295 2.4e-09 66.6 101 45.5
BcaB05g21931 Brassica carinata HOM05D004525 ORTHO05D005295 2.3e-07 60.1 86 48.8
SGA_v2.0_scaffold104G30259 Striga asiatica HOM05D004525 ORTHO05D005295 2.5e-06 56.6 169 33.1


User provided reference genes

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