Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 1.1e-139 500.0 261 100.0
Zm00001eb259540 Zea mays HOM05D003707 ORTHO05D004309 1.4e-44 184.1 254 44.1
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 6.8e-44 181.8 328 39.6
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 4.4e-43 179.1 327 39.4
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 9.8e-43 177.9 326 39.3
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 1.3e-42 177.6 319 39.8
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 1.4e-41 174.1 327 38.2
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 3.1e-41 172.9 330 38.5
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 4.1e-41 172.6 325 39.1
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 4.1e-41 172.6 327 37.9
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 5.4e-41 172.2 327 37.9
Os02g0831400 Oryza sativa ssp. japonica HOM05D003707 ORTHO05D004309 9.2e-41 171.4 205 46.8
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 1.6e-40 170.6 328 37.5
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 2.7e-40 169.9 327 37.6
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 5.9e-40 168.7 326 39.9
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 1.7e-39 167.2 328 37.2
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 2.9e-39 166.4 328 37.2
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 3.8e-39 166.0 324 36.4
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 5.0e-39 165.6 324 36.4
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 5.0e-39 165.6 327 36.7
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 8.6e-39 164.9 327 35.5
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 8.6e-39 164.9 328 37.5
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.1e-38 164.5 324 36.7
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 1.9e-38 163.7 320 39.4
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 4.3e-38 162.5 327 36.4
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 9.5e-38 161.4 330 37.9
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 1.6e-37 160.6 329 37.7
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 4.7e-37 159.1 328 35.7
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 1.0e-36 157.9 328 36.3
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 5.2e-36 155.6 329 36.5
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 5.2e-36 155.6 332 38.3
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 8.9e-36 154.8 330 37.3
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 1.2e-35 154.5 257 42.4
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 3.4e-35 152.9 328 35.7
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 7.5e-35 151.8 329 36.5
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 4.9e-34 149.1 327 36.1
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 6.4e-34 148.7 328 35.4
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 1.1e-33 147.9 329 35.6
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 1.1e-33 147.9 388 33.5
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 2.4e-33 146.7 328 37.5
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 2.4e-33 146.7 330 35.5
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 1.6e-32 144.1 334 35.0
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 1.6e-32 144.1 328 35.7
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 2.0e-32 143.7 327 33.3
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 4.6e-32 142.5 329 34.0
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 2.3e-31 140.2 331 36.0
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 3.0e-31 139.8 326 35.9
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 3.0e-31 139.8 327 33.3
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 3.9e-31 139.4 328 33.8
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 5.0e-31 139.0 329 31.6
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 5.0e-31 139.0 328 34.5
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 5.0e-31 139.0 327 34.6
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 1.1e-30 137.9 329 32.8
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 1.1e-30 137.9 329 32.5
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 1.1e-30 137.9 327 32.1
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 1.5e-30 137.5 328 34.1
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 1.5e-30 137.5 328 34.1
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 2.5e-30 136.7 388 33.5
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 3.3e-30 136.3 328 35.1
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 4.3e-30 136.0 328 35.1
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 7.3e-30 135.2 283 35.0
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 1.6e-29 134.0 302 35.4
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 6.2e-29 132.1 288 35.8
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 1.0e-28 131.3 320 35.0
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 1.0e-28 131.3 329 32.5
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 1.8e-28 130.6 326 35.6
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 3.1e-28 129.8 380 31.3
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 5.2e-28 129.0 332 31.9
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 5.2e-28 129.0 325 33.8
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 1.2e-27 127.9 385 31.9
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 1.5e-27 127.5 325 33.5
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 1.5e-27 127.5 318 34.9
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 2.6e-27 126.7 317 33.8
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 2.6e-27 126.7 324 34.0
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 3.4e-27 126.3 327 32.1
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 4.4e-27 125.9 330 32.1
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 7.5e-27 125.2 317 33.8
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 9.8e-27 124.8 329 31.9
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 3.7e-26 122.9 329 30.7
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 8.3e-26 121.7 323 32.5
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 1.4e-25 120.9 330 33.0
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 2.4e-25 120.2 323 33.1
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 3.2e-25 119.8 323 31.3
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 4.1e-25 119.4 326 33.7
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 1.2e-24 117.9 326 30.4
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 1.6e-24 117.5 324 30.9
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 2.0e-24 117.1 328 31.4
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 4.6e-24 115.9 401 30.2
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 2.3e-23 113.6 320 32.5
MBI06_g34539_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 3.0e-23 113.2 113 61.9
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 1.1e-22 111.3 323 31.0
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 5.6e-22 109.0 288 30.6
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 1.6e-21 107.5 336 32.4
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 2.8e-21 106.7 341 31.1
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 3.6e-21 106.3 322 28.3
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 3.6e-21 106.3 328 32.0
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 4.7e-21 105.9 331 32.9
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 6.2e-21 105.5 328 33.2
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 8.1e-21 105.1 335 30.7
Hma1.2p1_0526F.1_g172810 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 8.1e-21 105.1 111 58.6
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 1.1e-20 104.8 320 28.1
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 2.3e-20 103.6 176 42.0
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 3.1e-20 103.2 218 37.6
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 5.2e-20 102.4 327 29.1
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 8.9e-20 101.7 259 30.5
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 8.9e-20 101.7 174 40.2
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 1.2e-19 101.3 125 45.6
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 2.6e-19 100.1 265 34.3
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 5.8e-19 99.0 300 30.3
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 1.7e-18 97.4 292 29.5
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 6.4e-18 95.5 158 37.3
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 1.4e-17 94.4 113 48.7
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 1.9e-17 94.0 385 28.3
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 2.4e-17 93.6 281 26.3
RcHm_v2.0_Chr5g0045611 Rosa chinensis HOM05D003707 ORTHO05D004309 2.4e-17 93.6 120 50.0
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 3.2e-17 93.2 291 28.9
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 4.1e-17 92.8 204 32.8
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 4.1e-17 92.8 113 48.7
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 7.1e-17 92.0 133 41.4
Duzib116G0740 Durio zibethinus HOM05D003707 ORTHO05D004309 9.2e-17 91.7 90 56.7
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 9.2e-17 91.7 369 27.1
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 1.6e-16 90.9 274 27.7
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 2.7e-16 90.1 284 26.8
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 3.5e-16 89.7 274 27.0
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 3.5e-16 89.7 157 40.1
Oeu029730.1 Olea europaea HOM05D003707 ORTHO05D004309 6.0e-16 89.0 142 42.3
RcHm_v2.0_Chr3g0481861 Rosa chinensis HOM05D003707 ORTHO05D004309 1.0e-15 88.2 120 49.2
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 1.3e-15 87.8 324 27.2
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 3.9e-15 86.3 324 27.5
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 3.9e-15 86.3 296 26.4
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 3.9e-15 86.3 296 27.4
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 8.6e-15 85.1 291 28.5
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 1.9e-14 84.0 122 40.2
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 3.3e-14 83.2 283 26.9
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 3.3e-14 83.2 326 25.8
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 3.3e-14 83.2 326 26.7
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 4.3e-14 82.8 324 25.9
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 5.6e-14 82.4 325 26.8
Sc23g0000420 Simmondsia chinensis HOM05D003707 ORTHO05D004309 5.6e-14 82.4 117 47.0
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 7.3e-14 82.0 293 27.3
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 9.5e-14 81.6 163 34.4
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 2.1e-13 80.5 288 28.8
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 2.1e-13 80.5 114 43.0
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 3.6e-13 79.7 146 40.4
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 6.2e-13 79.0 311 28.6
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 1.1e-12 78.2 303 27.1
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 1.1e-12 78.2 303 27.1
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 3.1e-12 76.6 358 24.0
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 4.0e-12 76.3 286 25.5
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 6.8e-12 75.5 195 30.8
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 8.9e-12 75.1 356 27.2
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 2.0e-11 73.9 266 29.7
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 2.6e-11 73.6 357 25.2
Haze_21792 Corylus avellana HOM05D003707 ORTHO05D004309 3.4e-11 73.2 85 49.4
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 7.6e-11 72.0 175 32.0
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 4.9e-10 69.3 277 28.9
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 8.4e-10 68.6 90 40.0
RcHm_v2.0_Chr5g0040961 Rosa chinensis HOM05D003707 ORTHO05D004309 1.1e-09 68.2 84 48.8
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 2.4e-09 67.0 218 31.7
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 2.1e-08 63.9 226 24.8
Actinidia33120 Actinidia chinensis HOM05D003707 ORTHO05D004309 6.6e-07 58.9 211 30.3
Medtr5g064800 Medicago truncatula HOM05D009584 ORTHO05D011650 1.1e-06 58.2 239 30.1
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 2.5e-06 57.0 294 27.2
RcHm_v2.0_Chr5g0044811 Rosa chinensis HOM05D003707 ORTHO05D004309 4.3e-06 56.2 53 58.5
Lsat_1_v5_gn_1_3000 Lactuca sativa HOM05D003707 ORTHO05D004309 5.6e-06 55.8 102 39.2


User provided reference genes

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